chrY	2709714	G	n	AA	1.5216e-34	16	AluY.SINE.Alu	18741	-	-	-	-
chrY	2728455	T	n	CC	0.0052133	2	MER41-int.LTR.ERV1	14689	rs2058276	single	-	AG
chrY	2743144	T	n	CC	8.5505e-06	7	L1PA15.LINE.L1	6	-	-	-	-
chrY	2743150	G	n	CC	5.0522e-14	8	L1PA15.LINE.L1	6	-	-	-	-
chrY	2746554	A	n	GG	4.9502e-38	24	AluSc.SINE.Alu	3404	-	-	-	-
chrY	2751216	C	n	TT	3.2042e-33	14	MLT1D.LTR.MaLR	4662	-	-	-	-
chrY	2812578	A	n	GG	7.1102e-06	5	AluSg.SINE.Alu	58004	-	-	-	-
chrY	2870582	G	n	AA	4.8079e-25	14	AluJb.SINE.Alu	58004	rs1270121	single	+	AG
chrY	2947823	A	n	CC	5.6037e-36	14	LTR9B.LTR.ERV1	972	rs9786184	single	+	AC
chrY	2948795	A	n	GG	1.0081e-72	27	AluY.SINE.Alu	972	-	-	-	-
chrY	2957047	T	n	AA	0.016423	4	L1PA6.LINE.L1	8252	-	-	-	-
chrY	2992745	A	n	GG	1.8282e-13	14	-	35698	rs4400551	single	+	AG
chrY	3120619	T	n	CC	7.0478e-06	5	L1MC4.LINE.L1	63334	rs34472156	single	+	CT
chrY	3183953	G	n	AA	6.1085e-14	6	MLT-int.LTR.MaLR	1	rs9785857	single	+	AG
chrY	3183954	T	n	GG	1.3288e-13	6	MLT-int.LTR.MaLR	1	rs9785690	single	+	GT
chrY	3316136	T	n	CC	1.8381e-05	3	-	9950	-	-	-	-
chrY	3326086	C	n	TT	1.4895e-17	7	L1PB1.LINE.L1	8836	rs2552945	single	+	CT
chrY	3334922	C	n	AA	6.7938e-16	7	HUERS-P3.LTR.ERV1	8836	rs7892842	single	+	AC
chrY	3372357	A	n	GG	2.3554e-19	13	L1HS.LINE.L1	10425	-	-	-	-
chrY	3382782	C	n	TT	0.0027835	2	(TC)n.Simple_repeat.Simple_repeat	10425	-	-	-	-
chrY	3457016	T	n	GG	1.6697e-22	9	L1PA17.LINE.L1	47243	rs2432879	single	+	GT
chrY	3504259	G	n	AA	1.6827e-22	11	AluSg.SINE.Alu	47243	-	-	-	-
chrY	3562886	C	n	TT	4.363e-12	6	MER50-int.LTR.ERV1	58086	-	-	-	-
chrY	3620972	T	n	GG	3.4134e-05	3	L1ME2.LINE.L1	2	rs73612937	single	+	GT
chrY	3620974	T	n	CC	2.0888e-05	3	L1ME2.LINE.L1	2	rs73612938	single	+	CT
chrY	3631825	C	n	AA	0.024718	6	AluY.SINE.Alu	10851	rs9786423	single	+	AC
chrY	3869551	A	n	TT	0.062228	5	AluSx.SINE.Alu	59721	rs384305	single	+	AT
chrY	3929272	C	n	GG	0.0097367	3	L1PA7.LINE.L1	472	rs9786622	single	+	CG
chrY	3929744	G	n	AA	0.0032099	2	L1PA7.LINE.L1	472	rs62611083	single	+	AG
chrY	3949758	C	n	AA	0.012932	2	-	20014	-	-	-	-
chrY	4020189	G	n	AA	9.4629e-15	6	L1PB1.LINE.L1	49033	-	-	-	-
chrY	4069222	T	n	CC	0.044238	2	THE1D-int.LTR.MaLR	49033	rs7892959	single	+	CT
chrY	4196692	T	n	CC	2.9155e-12	15	L1M3.LINE.L1	2841	-	-	-	-
chrY	4199533	T	n	GG	8.8864e-05	3	MLT-int.LTR.MaLR	2841	-	-	-	-
chrY	4283441	A	n	GG	8.1439e-09	5	LTR7.LTR.ERV1	2760	rs9785792	single	+	AG
chrY	4286201	T	n	GG	0.14117	2	HERVH.LTR.ERV1	2760	-	-	-	-
chrY	4323140	A	n	GG	1.861e-11	9	AluSc.SINE.Alu	23867	-	-	-	-
chrY	4347007	C	n	TT	3.4485e-05	3	L1PA4.LINE.L1	23867	-	-	-	-
chrY	4435661	G	n	TT	0.005895	4	AluSx.SINE.Alu	14032	-	-	-	-
chrY	4449693	C	n	TT	0.0033037	2	MER4A1-int.LTR.ERV1	14032	rs2437643	single	+	CT
chrY	4478321	G	n	CC	4.2063e-14	6	AluSp.SINE.Alu	23750	rs9786734	single	+	CG
chrY	4502071	C	n	TT	0.023901	2	-	4358	rs13304515	single	+	CT
chrY	4506429	A	n	TT	1.2163e-60	25	MER52C.LTR.ERV1	4358	rs9786486	single	+	AT
chrY	4521871	G	n	CC	0.018442	2	L1M2.LINE.L1	15442	-	-	-	-
chrY	4552478	G	n	CC	0.043822	2	L1MA2.LINE.L1	30607	-	-	-	-
chrY	4643131	T	n	GG	0.056372	4	AluY.SINE.Alu	8234	-	-	-	-
chrY	4651365	C	n	GG	0.07878	2	-	8234	rs2114785	single	+	CG
chrY	4706571	G	n	TT	1.0548e-05	4	L1PA12.LINE.L1	35953	rs9785681	single	+	GT
chrY	4742524	A	n	GG	0.0013217	3	L1PA4.LINE.L1	35953	-	-	-	-
chrY	4796996	T	n	CC	0.034501	7	L1PA3.LINE.L1	5	-	-	-	-
chrY	4797001	A	n	CC	0.0031923	7	L1PA3.LINE.L1	5	-	-	-	-
chrY	4797528	T	n	GG	0.2627	2	L1PA3.LINE.L1	527	-	-	-	-
chrY	4841604	T	n	AA	0.021368	2	L1PA4.LINE.L1	31742	-	-	-	-
chrY	4873346	C	n	GG	0.00027389	6	MER76.LTR.ERVL	3607	-	-	-	-
chrY	4876953	A	n	TT	3.7348e-08	4	-	3607	-	-	-	-
chrY	4905978	C	n	TT	0.0034406	2	L1PA3.LINE.L1	20	-	-	-	-
chrY	4905998	G	n	AA	0.0034567	2	L1PA3.LINE.L1	20	-	-	-	-
chrY	5128707	G	n	AA	6.1875e-12	6	AluJb.SINE.Alu	138873	-	-	-	-
chrY	5267580	G	n	AA	5.8302e-27	12	AluSx.SINE.Alu	17281	-	-	-	-
chrY	5284861	A	n	GG	5.9931e-23	10	AluSq.SINE.Alu	17281	rs9786302	single	+	AG
chrY	5414890	T	n	CC	0.029298	13	AluY.SINE.Alu	110257	-	-	-	-
chrY	5525147	A	n	GG	1.1654e-08	4	L1PB1.LINE.L1	102239	rs9786784	single	+	AG
chrY	5627386	A	n	GG	2.4476e-17	8	L1PA10.LINE.L1	102239	rs9786507	single	+	AG
chrY	5753293	A	n	GG	0.0085833	3	MLT1E3.LTR.MaLR	22922	rs73612985	single	+	AG
chrY	5776215	A	n	GG	9.4231e-06	3	HERVL-A2.LTR.ERVL	22922	rs4028909	single	+	AG
chrY	5814895	A	n	TT	0.047305	2	-	654	-	-	-	-
chrY	5815549	T	n	CC	1.4625e-25	10	-	654	rs2566671	single	+	CT
chrY	5874644	T	n	CC	1.4239e-31	13	MER51B-int.LTR.ERV1	27246	rs2435747	single	+	CT
chrY	5901890	A	n	GG	2.6392e-08	4	L1PBb.LINE.L1	27246	-	-	-	-
chrY	6008794	C	n	GG	3.5917e-14	20	AluY.SINE.Alu	106904	-	-	-	-
chrY	6118571	G	n	AA	0.0032099	2	-	71861	-	-	-	-
chrY	6190432	C	n	TT	0.003195	2	-	3417	rs411212	single	+	CT
chrY	6193849	C	n	GG	3.3462e-06	6	-	3417	-	-	-	-
chrY	6416806	G	n	AA	9.5963e-06	5	HERV9.LTR.ERV1	46810	-	-	-	-
chrY	6463616	A	n	GG	5.4737e-27	15	-	37	rs72314892	in-del	+	lengthTooLong
chrY	6463653	A	n	GG	1.3071e-08	15	-	37	rs72314892	in-del	+	lengthTooLong
chrY	6515577	C	n	AA	6.1957e-08	5	L1M1.LINE.L1	29108	-	-	-	-
chrY	6544685	C	n	TT	0.011187	2	L1PA17.LINE.L1	29108	-	-	-	-
chrY	6677229	T	n	CC	1.935e-54	55	LTR5_Hs.LTR.ERVK	84009	-	-	-	-
chrY	6761238	A	n	GG	0.0061298	2	-	20462	rs9786117	single	+	AG
chrY	6781700	C	n	TT	1.5602e-05	7	L1PA3.LINE.L1	3464	-	-	-	-
chrY	6785164	T	n	CC	0.0085318	5	L1PA3.LINE.L1	3179	-	-	-	-
chrY	6788343	T	n	AA	0.042544	2	L1PA8A.LINE.L1	3179	-	-	-	-
chrY	6800149	C	n	TT	3.7558e-26	10	MER5A.DNA.MER1_type	11806	-	-	-	-
chrY	6813510	A	n	GG	1.9372e-51	36	AluY.SINE.Alu	4829	rs9785971	single	+	AG
chrY	6818339	T	n	CC	7.2519e-23	9	-	4829	-	-	-	-
chrY	6824054	A	n	CC	2.5565e-05	3	L1P1.LINE.L1	1979	-	-	-	-
chrY	6826033	T	n	CC	4.4762e-13	6	AluSx.SINE.Alu	1979	rs56244518	single	+	CT
chrY	6838042	G	n	AA	7.7007e-96	36	-	12009	-	-	-	-
chrY	6872698	T	n	CC	6.6586e-11	7	L1MB2.LINE.L1	14463	-	-	-	-
chrY	6887161	G	n	CC	7.4105e-21	15	LTR5A.LTR.ERVK	12	-	-	-	-
chrY	6887173	C	n	TT	1.2019e-16	8	LTR5A.LTR.ERVK	12	-	-	-	-
chrY	6890171	C	n	GG	2.8285e-68	46	HERVK.LTR.ERVK	760	-	-	-	-
chrY	6890931	G	n	CC	3.0446e-08	4	HERVK.LTR.ERVK	760	-	-	-	-
chrY	6899099	A	n	TT	7.5099e-14	6	-	8168	-	-	-	-
chrY	6962934	T	n	AA	0.033349	2	L1PA7.LINE.L1	10	-	-	-	-
chrY	6962944	G	n	AA	0.0054507	2	L1PA7.LINE.L1	10	-	-	-	-
chrY	6992349	G	n	AA	1.973e-13	6	-	440	-	-	-	-
chrY	6992789	A	n	TT	3.8459e-08	4	-	440	rs7892861	single	+	AT
chrY	7040330	A	n	TT	1.9457e-13	6	-	33986	-	-	-	-
chrY	7074316	G	n	CC	4.2491e-22	9	-	13156	rs35724598	single	+	CG
chrY	7087472	C	n	TT	0.15784	13	L1PA2.LINE.L1	13156	-	-	-	-
chrY	7115575	C	n	TT	3.901e-40	16	LTR26.LTR.ERV1	17847	-	-	-	-
chrY	7133422	A	n	GG	6.1478e-20	8	AluJo.SINE.Alu	8138	rs3096835	single	+	AG
chrY	7141560	T	n	CC	2.1818e-32	14	AluY.SINE.Alu	2974	rs9785707	single	+	CT
chrY	7144534	A	n	GG	1.1159e-28	11	AluSx.SINE.Alu	161	rs72617702	single	+	AG
chrY	7144695	C	n	AA	0.01251	2	FLAM_C.SINE.Alu	161	-	-	-	-
chrY	7192712	A	n	GG	5.4476e-08	4	LTR12D.LTR.ERV1	1273	rs3116338	single	+	AG
chrY	7193985	C	n	GG	4.0456e-36	14	AluSx.SINE.Alu	1273	rs3116340	single	+	CG
chrY	7224282	C	n	TT	2.8482e-20	12	AluSg1.SINE.Alu	12906	rs9786466	single	+	CT
chrY	7237188	A	n	GG	4.1311e-11	5	-	12906	rs9785710	single	+	AG
chrY	7360248	T	n	CC	0.0050761	2	L1PA5.LINE.L1	21081	-	-	-	-
chrY	7381329	A	n	CC	4.0206e-59	23	AluY.SINE.Alu	18089	rs6530623	single	+	AC
chrY	7399418	C	n	TT	2.5339e-49	19	-	2968	-	-	-	-
chrY	7402386	C	n	TT	2.1783e-22	14	L1PA5.LINE.L1	2968	-	-	-	-
chrY	7435014	T	n	CC	1.7015e-05	3	LTR7B.LTR.ERV1	32628	rs68092085	single	+	CT
chrY	7511253	G	n	AA	9.4216e-12	5	-	76239	-	-	-	-
chrY	7601402	G	n	TT	3.6343e-64	28	LTR12C.LTR.ERV1	7497	-	-	-	-
chrY	7608899	A	n	GG	9.0274e-38	15	-	1397	rs2078144	single	-	CT
chrY	7610296	T	n	CC	8.1551e-19	8	L1MA8.LINE.L1	1397	-	-	-	-
chrY	7668439	T	n	CC	1.1344e-11	11	(TC)n.Simple_repeat.Simple_repeat	1	-	-	-	-
chrY	7668440	C	n	AA	0.0015489	11	(TC)n.Simple_repeat.Simple_repeat	1	-	-	-	-
chrY	7668442	C	n	GG	0.081099	12	(TC)n.Simple_repeat.Simple_repeat	2	-	-	-	-
chrY	7707356	A	n	GG	0.0048585	3	L1MC4a.LINE.L1	24178	rs7067478	single	+	AG
chrY	7731534	T	n	CC	3.3229e-05	3	-	24178	rs35768594	single	+	CT
chrY	7793228	A	n	GG	0.012148	2	HERVK22.LTR.ERVK	26715	rs72503372	single	-	AG
chrY	7819943	A	n	GG	1.4798e-61	26	LTR17.LTR.ERV1	11187	rs72503372	single	-	AG
chrY	7831130	A	n	GG	2.8016e-54	20	-	11187	rs72503372	single	-	AG
chrY	7904489	G	n	AA	0.0055203	2	-	46698	rs11799125	single	+	AG
chrY	7951187	C	n	TT	8.2774e-09	4	BSR/Beta.Satellite.Satellite	9695	rs72492059	in-del	-	-TATAAACACTCTGAATGTT
chrY	7960882	A	n	CC	2.5558e-22	9	-	9695	rs72492059	in-del	-	-TATAAACACTCTGAATGTT
chrY	7977379	A	n	GG	0.0053806	2	L1PA6.LINE.L1	6694	rs72492059	in-del	-	-TATAAACACTCTGAATGTT
chrY	7984073	G	n	TT	0.014479	4	L1PA4.LINE.L1	16	rs72492059	in-del	-	-TATAAACACTCTGAATGTT
chrY	7984089	G	n	CC	0.027503	4	L1PA4.LINE.L1	14	rs72492059	in-del	-	-TATAAACACTCTGAATGTT
chrY	7984103	C	n	GG	0.33233	4	L1PA4.LINE.L1	14	rs72492059	in-del	-	-TATAAACACTCTGAATGTT
chrY	7992796	G	n	AA	6.3407e-09	4	BSR/Beta.Satellite.Satellite	1623	rs72492059	in-del	-	-TATAAACACTCTGAATGTT
chrY	7994419	A	n	TT	4.3291e-08	4	BSR/Beta.Satellite.Satellite	1623	rs72492059	in-del	-	-TATAAACACTCTGAATGTT
chrY	8006677	A	n	CC	1.3993e-22	10	BSR/Beta.Satellite.Satellite	12258	rs72492059	in-del	-	-TATAAACACTCTGAATGTT
chrY	8130531	A	n	TT	1.5442e-26	12	HERVK22.LTR.ERVK	24099	rs9786242	single	+	AT
chrY	8154630	G	n	AA	0.01343	2	(TA)n.Simple_repeat.Simple_repeat	17696	-	-	-	-
chrY	8172326	A	n	GG	0.0055794	2	L1PA5.LINE.L1	17696	-	-	-	-
chrY	8209347	G	n	AA	3.93e-21	12	-	37021	rs9786882	single	+	AG
chrY	8254309	A	n	CC	2.6437e-05	3	BSR/Beta.Satellite.Satellite	20517	rs9786671	single	+	AC
chrY	8274826	T	n	CC	1.422e-11	5	-	20517	rs9786291	single	+	CT
chrY	8313920	A	n	GG	1.3994e-05	3	AluY.SINE.Alu	39094	rs72487325	in-del	-	-AA
chrY	8356396	C	n	TT	0.0041031	2	L1PA7.LINE.L1	44	-	-	-	-
chrY	8356440	T	n	GG	4.1318e-08	4	L1PA7.LINE.L1	44	rs1813889	single	-	AC
chrY	8468154	G	n	TT	0.092692	3	HERVE.LTR.ERV1	3047	-	-	-	-
chrY	8471201	G	n	AA	0.058058	2	HERVE.LTR.ERV1	3047	rs9786639	single	+	AG
chrY	8476057	A	n	CC	0.038482	2	SST1.Satellite.centr	2836	rs9786304	single	+	AC
chrY	8478893	G	n	CC	5.3238e-29	12	-	2836	-	-	-	-
chrY	8492919	A	n	CC	0.021116	2	SST1.Satellite.centr	5501	-	-	-	-
chrY	8498420	A	n	TT	4.8019e-15	8	-	1121	-	-	-	-
chrY	8499541	A	n	GG	8.3923e-09	4	-	1121	rs67541529	single	+	AG
chrY	8504029	G	n	AA	1.534e-07	5	-	4488	-	-	-	-
chrY	8514149	A	n	CC	9.2492e-11	5	-	2625	-	-	-	-
chrY	8516774	G	n	CC	1.4566e-13	7	-	2625	-	-	-	-
chrY	8539244	A	n	GG	6.5634e-12	6	-	173	rs72485519	in-del	+	-CAAAA
chrY	8539417	C	n	TT	0.0027141	6	AluY.SINE.Alu	173	rs72485519	in-del	+	-CAAAA
chrY	8560132	G	n	AA	3.0025e-16	7	SST1.Satellite.centr	2103	rs72485519	in-del	+	-CAAAA
chrY	8562235	A	n	GG	2.9685e-42	17	-	2103	rs72485519	in-del	+	-CAAAA
chrY	8603449	T	n	CC	3.243e-34	13	-	3956	-	-	-	-
chrY	8607405	A	n	CC	4.7967e-08	4	-	3956	-	-	-	-
chrY	8614289	A	n	GG	1.8986e-22	9	-	142	-	-	-	-
chrY	8614431	G	n	TT	5.827e-14	6	SST1.Satellite.centr	142	-	-	-	-
chrY	8682067	A	n	GG	3.3428e-25	10	-	9179	-	-	-	-
chrY	8691246	A	n	GG	1.7851e-19	8	-	9179	-	-	-	-
chrY	8727178	G	n	AA	6.0731e-06	3	L2.LINE.L2	9151	rs11096453	single	+	AG
chrY	8736329	A	n	GG	3.1501e-16	7	HERVE.LTR.ERV1	9151	rs58822352	single	+	AG
chrY	8782475	T	n	AA	0.029052	2	MER53.DNA.DNA	46146	rs7067259	single	+	AT
chrY	8842356	T	n	CC	0.025362	2	L1MB4.LINE.L1	19067	-	-	-	-
chrY	8861423	A	n	GG	0.010618	3	GA-rich.Low_complexity.Low_complexity	252	-	-	-	-
chrY	8861675	G	n	AA	0.0038478	2	-	252	-	-	-	-
chrY	8865524	A	n	GG	3.0333e-51	25	LTR1.LTR.ERV1	3849	rs1264078	single	+	AG
chrY	8886594	T	n	CC	1.4363e-76	32	AluY.SINE.Alu	8942	rs9786584	single	+	CT
chrY	8895536	G	n	AA	0.0039281	2	AluSx.SINE.Alu	4597	-	-	-	-
chrY	8900133	C	n	TT	3.151e-28	11	-	4597	-	-	-	-
chrY	8931300	G	n	TT	4.7966e-14	6	SST1.Satellite.centr	230	-	-	-	-
chrY	8931530	C	n	TT	7.5034e-34	13	-	230	-	-	-	-
chrY	8934167	T	n	CC	3.3953e-16	9	-	2637	-	-	-	-
chrY	8947965	G	n	AA	3.3143e-22	9	-	13798	-	-	-	-
chrY	8974954	T	n	GG	0.01946	2	-	1	-	-	-	-
chrY	9144869	T	n	GG	8.7483e-10	5	L1M4.LINE.L1	56041	rs67952918	single	+	GT
chrY	9200910	G	n	TT	3.3557e-32	15	-	23000	-	-	-	-
chrY	9223910	G	n	TT	2.3142e-10	9	-	23000	-	-	-	-
chrY	9299419	C	n	TT	2.64e-26	11	-	1903	rs404446	single	+	CT
chrY	9994477	G	n	AA	5.3169e-09	11	-	8470	-	-	-	-
chrY	10002947	T	n	CC	6.4854e-06	3	L1MA8.LINE.L1	8470	rs9786010	single	+	CT
chrY	10074077	T	n	CC	1.3817e-43	17	-	12384	rs4480299	single	+	CT
chrY	10086461	A	n	CC	0.023681	2	-	12384	-	-	-	-
chrY	10229731	G	n	AA	2.1062e-42	16	-	27248	-	-	-	-
chrY	10256979	T	n	CC	7.7705e-31	12	-	27248	rs72618768	single	+	CT
chrY	10381940	T	n	AA	0.15688	2	AluJo.SINE.Alu	5489	rs66775592	single	+	AT
chrY	10387429	G	n	AA	6.4039e-11	5	AluJo.SINE.Alu	5489	-	-	-	-
chrY	10420793	C	n	TT	2.233e-05	3	L1P2.LINE.L1	33364	rs7067387	single	+	CT
chrY	10499198	A	n	GG	9.2401e-17	8	HERVH.LTR.ERV1	20777	rs55880874	single	+	AG
chrY	10519975	T	n	GG	0.094843	11	ALR/Alpha.Satellite.centr	441	rs3959330	single	-	CT
chrY	10520416	A	n	TT	6.4711e-14	8	ALR/Alpha.Satellite.centr	441	-	-	-	-
chrY	10520868	A	n	CC	4.8416e-11	21	ALR/Alpha.Satellite.centr	4	-	-	-	-
chrY	10520872	T	n	GG	7.2317e-05	19	ALR/Alpha.Satellite.centr	4	-	-	-	-
chrY	10522186	T	n	AA	6.4146e-14	10	ALR/Alpha.Satellite.centr	3	-	-	-	-
chrY	10522189	T	n	AA	5.5246e-07	10	ALR/Alpha.Satellite.centr	3	-	-	-	-
chrY	10524114	A	n	CC	3.6634e-08	17	ALR/Alpha.Satellite.centr	642	-	-	-	-
chrY	10524756	T	n	CC	0.010327	6	ALR/Alpha.Satellite.centr	642	-	-	-	-
chrY	10525612	A	n	GG	4.764e-22	70	ALR/Alpha.Satellite.centr	5	-	-	-	-
chrY	10525617	C	n	GG	2.0622e-20	70	ALR/Alpha.Satellite.centr	5	-	-	-	-
chrY	10525786	G	n	TT	5.4857e-06	22	ALR/Alpha.Satellite.centr	169	rs2337319	single	+	AT
chrY	10526735	T	n	AA	1.5664e-13	14	ALR/Alpha.Satellite.centr	301	-	-	-	-
chrY	10527036	G	n	CC	1.6448e-20	15	ALR/Alpha.Satellite.centr	301	-	-	-	-
chrY	10528074	A	n	TT	4.4184e-20	18	ALR/Alpha.Satellite.centr	4	-	-	-	-
chrY	10528078	G	n	CC	1.6e-06	16	ALR/Alpha.Satellite.centr	4	-	-	-	-
chrY	10529243	C	n	TT	8.7415e-29	24	ALR/Alpha.Satellite.centr	17	-	-	-	-
chrY	10529260	T	n	CC	1.2717e-37	20	ALR/Alpha.Satellite.centr	6	-	-	-	-
chrY	10529266	G	n	AA	5.6603e-30	22	ALR/Alpha.Satellite.centr	6	-	-	-	-
chrY	10530056	C	n	TT	2.3147e-140	84	ALR/Alpha.Satellite.centr	328	-	-	-	-
chrY	10530384	C	n	GG	0.012856	5	ALR/Alpha.Satellite.centr	328	-	-	-	-
chrY	10530942	G	n	AA	0.0056259	2	ALR/Alpha.Satellite.centr	219	rs9786477	single	+	AG
chrY	10531161	T	n	CC	1.3357e-08	31	ALR/Alpha.Satellite.centr	1	-	-	-	-
chrY	10531162	C	n	TT	3.3687e-11	30	ALR/Alpha.Satellite.centr	1	-	-	-	-
chrY	10531962	A	n	TT	2.0641e-46	43	ALR/Alpha.Satellite.centr	2	-	-	-	-
chrY	10531964	C	n	GG	4.3877e-48	43	ALR/Alpha.Satellite.centr	2	-	-	-	-
chrY	10532588	A	n	GG	7.3546e-12	15	ALR/Alpha.Satellite.centr	4	-	-	-	-
chrY	10532592	T	n	GG	1.3009e-10	15	ALR/Alpha.Satellite.centr	4	-	-	-	-
chrY	10533387	A	n	GG	0.007939	4	ALR/Alpha.Satellite.centr	1	-	-	-	-
chrY	10533388	G	n	TT	0.0031978	4	ALR/Alpha.Satellite.centr	1	-	-	-	-
chrY	10533806	A	n	GG	9.297e-16	18	ALR/Alpha.Satellite.centr	3	-	-	-	-
chrY	10533809	G	n	AA	3.9837e-18	17	ALR/Alpha.Satellite.centr	3	-	-	-	-
chrY	10533890	G	n	CC	0.47117	2	ALR/Alpha.Satellite.centr	81	-	-	-	-
chrY	10534140	G	n	CC	0.014243	3	ALR/Alpha.Satellite.centr	250	-	-	-	-
chrY	10535707	G	n	TT	1.3703e-05	3	-	315	-	-	-	-
chrY	10536022	T	n	AA	1.5128e-14	12	-	3	-	-	-	-
chrY	10536025	A	n	GG	1.4322e-06	12	-	3	-	-	-	-
chrY	10539155	T	n	GG	2.8614e-40	38	LTR2.LTR.ERV1	869	-	-	-	-
chrY	10540024	A	n	GG	5.3922e-111	113	-	1	rs36145973	single	-	CT
chrY	10540025	C	n	GG	6.8278e-122	118	-	1	-	-	-	-
chrY	10540874	A	n	CC	6.6728e-17	178	-	205	-	-	-	-
chrY	10541079	G	n	TT	0.014766	3	L1M1.LINE.L1	205	-	-	-	-
chrY	10541427	C	n	TT	2.4777e-08	37	L1M1.LINE.L1	348	rs7341991	single	+	CT
chrY	10541990	A	n	TT	2.1173e-08	13	L1M1.LINE.L1	513	-	-	-	-
chrY	10542503	T	n	GG	0.12125	12	L1M1.LINE.L1	513	-	-	-	-
chrY	10543090	T	n	CC	4.4423e-06	7	L1PREC2.LINE.L1	31	rs71261549	single	+	CT
chrY	10543121	G	n	TT	7.033e-17	11	L1PREC2.LINE.L1	31	-	-	-	-
chrY	10543866	A	n	GG	6.7675e-14	9	L1PREC2.LINE.L1	226	rs71232047	single	-	CT
chrY	10544092	C	n	GG	8.6807e-41	30	L1PREC2.LINE.L1	133	-	-	-	-
chrY	10544225	T	n	CC	4.4068e-05	3	L1PREC2.LINE.L1	12	-	-	-	-
chrY	10544237	C	n	TT	4.9283e-06	5	L1PREC2.LINE.L1	12	-	-	-	-
chrY	10544819	C	n	TT	2.4263e-06	5	L1PREC2.LINE.L1	57	rs28637235	single	+	CT
chrY	10544876	C	n	TT	0.003568	2	L1PREC2.LINE.L1	57	-	-	-	-
chrY	10545135	C	n	TT	1.0101e-11	5	-	163	-	-	-	-
chrY	10545298	C	n	AA	2.5475e-08	4	-	163	-	-	-	-
chrY	10546487	A	n	CC	5.1017e-65	125	-	33	-	-	-	-
chrY	10546520	T	n	CC	5.797e-07	27	-	33	rs71248020	single	-	CG
chrY	10547340	A	n	CC	6.4268e-63	51	-	11	-	-	-	-
chrY	10547351	T	n	GG	7.341e-167	68	-	11	-	-	-	-
chrY	10547484	C	n	GG	3.9614e-39	33	L1PB4.LINE.L1	133	-	-	-	-
chrY	10547994	A	n	TT	4.7422e-29	23	-	255	-	-	-	-
chrY	10548249	T	n	CC	0.0074744	2	L2.LINE.L2	4	-	-	-	-
chrY	10548253	T	n	CC	0.017691	2	L2.LINE.L2	4	-	-	-	-
chrY	10548303	G	n	CC	0.017574	2	-	50	-	-	-	-
chrY	10548595	A	n	GG	0.00015792	15	LTR6A.LTR.ERV1	201	rs71229705	single	-	CT
chrY	10548796	G	n	TT	0.012227	2	LTR6A.LTR.ERV1	201	-	-	-	-
chrY	10549129	A	n	GG	1.3901e-223	130	-	6	-	-	-	-
chrY	10549135	A	n	CC	2.0419e-262	140	-	6	-	-	-	-
chrY	10549335	A	n	GG	2.1187e-06	23	-	200	-	-	-	-
chrY	10549815	C	n	GG	0.013332	2	-	351	rs62609914	single	+	CG
chrY	10550166	T	n	CC	9.288e-42	28	-	10	-	-	-	-
chrY	10550176	C	n	TT	0.13715	26	-	10	-	-	-	-
chrY	10550646	A	n	GG	2.2977e-08	6	-	10	-	-	-	-
chrY	10550656	A	n	GG	4.3024e-13	8	-	10	-	-	-	-
chrY	10550969	G	n	AA	2.9596e-37	65	MLT1H1.LTR.MaLR	6	-	-	-	-
chrY	10550975	A	n	GG	1.5192e-24	79	MLT1H1.LTR.MaLR	6	-	-	-	-
chrY	10551033	A	n	GG	6.7197e-82	66	MLT1H1.LTR.MaLR	58	-	-	-	-
chrY	10551095	T	n	CC	7.9685e-27	35	MLT1H1.LTR.MaLR	62	-	-	-	-
chrY	10551216	A	n	GG	6.7563e-54	28	MLT1H1.LTR.MaLR	13	-	-	-	-
chrY	10551229	G	n	TT	2.4084e-28	19	MLT1H1.LTR.MaLR	13	-	-	-	-
chrY	10551462	C	n	AA	0.019744	2	-	16	-	-	-	-
chrY	10551478	A	n	CC	0.02441	2	-	16	-	-	-	-
chrY	10551641	C	n	TT	4.9234e-09	5	-	163	-	-	-	-
chrY	10551954	T	n	AA	0.09999	2	-	5	rs62609915	single	+	AT
chrY	10551959	T	n	GG	0.04154	2	-	5	rs62609916	single	+	GT
chrY	10552474	G	n	CC	2.0206e-08	4	L1PA16.LINE.L1	375	-	-	-	-
chrY	10552849	T	n	CC	7.0306e-36	17	L1PA16.LINE.L1	1	-	-	-	-
chrY	10552850	G	n	AA	5.8791e-42	19	L1PA16.LINE.L1	1	-	-	-	-
chrY	10552875	T	n	GG	2.3155e-10	44	L1PA16.LINE.L1	25	-	-	-	-
chrY	10553058	T	n	CC	0.03241	22	L1PA16.LINE.L1	142	-	-	-	-
chrY	10553200	G	n	AA	4.1804e-26	15	L1M1.LINE.L1	11	-	-	-	-
chrY	10553211	C	n	TT	1.1789e-27	16	L1M1.LINE.L1	11	-	-	-	-
chrY	10553539	T	n	GG	7.0302e-05	19	L1M1.LINE.L1	208	-	-	-	-
chrY	10553747	A	n	GG	1.288e-65	100	L1M1.LINE.L1	53	-	-	-	-
chrY	10553800	A	n	CC	2.5071e-47	65	L1M1.LINE.L1	4	-	-	-	-
chrY	10553804	T	n	CC	2.1345e-69	69	L1M1.LINE.L1	4	-	-	-	-
chrY	10554065	A	n	GG	0.10394	63	L1M1.LINE.L1	55	-	-	-	-
chrY	10554120	A	n	GG	2.4059e-102	70	L1M1.LINE.L1	26	rs2337648	single	-	AC
chrY	10554146	A	n	GG	2.8407e-06	103	L1M1.LINE.L1	22	-	-	-	-
chrY	10554168	A	n	GG	1.0016e-113	97	L1M1.LINE.L1	22	rs62609920	single	+	AG
chrY	10554655	A	n	GG	1.1583e-140	99	L1M1.LINE.L1	84	rs62609921	single	+	AG
chrY	10554739	G	n	AA	8.4518e-175	102	L1M1.LINE.L1	84	rs62609923	single	+	AG
chrY	10555039	A	n	TT	0.00033407	23	L1M1.LINE.L1	300	-	-	-	-
chrY	10556087	C	n	GG	3.2478e-11	5	L1P1.LINE.L1	30	-	-	-	-
chrY	10556117	T	n	GG	0.021562	2	L1P1.LINE.L1	30	-	-	-	-
chrY	10560861	T	n	GG	0.085064	2	L1M1.LINE.L1	37	-	-	-	-
chrY	10560898	G	n	AA	0.009629	2	L1M1.LINE.L1	37	-	-	-	-
chrY	10561502	T	n	GG	8.0098e-05	7	L1M1.LINE.L1	20	-	-	-	-
chrY	10561522	T	n	AA	0.0002453	7	L1M1.LINE.L1	20	-	-	-	-
chrY	10562143	T	n	GG	0.01883	2	L1M1.LINE.L1	1	-	-	-	-
chrY	10562144	T	n	AA	0.020533	2	L1M1.LINE.L1	1	rs9724594	single	+	AT
chrY	10562344	C	n	TT	0.003568	2	L1M1.LINE.L1	62	rs62609926	single	+	CT
chrY	10562406	T	n	AA	3.0599e-05	3	L1M1.LINE.L1	62	-	-	-	-
chrY	10562557	C	n	AA	1.2887e-05	14	L1M1.LINE.L1	7	-	-	-	-
chrY	10562564	A	n	GG	4.8643e-08	15	L1M1.LINE.L1	7	-	-	-	-
chrY	10562616	T	n	CC	5.2194e-107	69	AluSx.SINE.Alu	52	-	-	-	-
chrY	10562813	G	n	TT	1.7377e-60	61	AluSx.SINE.Alu	35	-	-	-	-
chrY	10562848	A	n	GG	1.1398e-179	105	AluSx.SINE.Alu	35	-	-	-	-
chrY	10563462	A	n	TT	0.019432	6	MSTA.LTR.MaLR	228	-	-	-	-
chrY	10563690	G	n	CC	2.4286e-08	4	MSTA.LTR.MaLR	58	-	-	-	-
chrY	10563748	A	n	CC	1.4635e-10	9	MLT-int.LTR.MaLR	58	-	-	-	-
chrY	10563832	T	n	GG	0.00022698	15	MLT-int.LTR.MaLR	84	-	-	-	-
chrY	10563959	A	n	GG	1.4181e-05	11	MLT-int.LTR.MaLR	88	-	-	-	-
chrY	10564047	C	n	TT	0.0056428	2	MLT-int.LTR.MaLR	22	-	-	-	-
chrY	10564069	A	n	GG	1.3187e-05	18	MLT-int.LTR.MaLR	22	-	-	-	-
chrY	10564196	T	n	AA	0.043376	6	MLT-int.LTR.MaLR	127	-	-	-	-
chrY	10564376	A	n	GG	5.436e-36	30	MLT-int.LTR.MaLR	102	-	-	-	-
chrY	10564478	A	n	GG	1.7851e-198	125	MLT-int.LTR.MaLR	102	-	-	-	-
chrY	10564675	A	n	CC	3.5788e-22	21	MLT-int.LTR.MaLR	16	-	-	-	-
chrY	10564691	T	n	GG	7.4996e-39	27	MLT-int.LTR.MaLR	4	-	-	-	-
chrY	10564695	A	n	GG	1.3551e-45	30	MLT-int.LTR.MaLR	4	-	-	-	-
chrY	10564774	A	n	CC	8.2035e-19	43	MLT-int.LTR.MaLR	79	-	-	-	-
chrY	10564858	T	n	CC	7.6463e-42	45	MLT-int.LTR.MaLR	7	-	-	-	-
chrY	10564865	G	n	CC	9.4358e-31	46	MLT-int.LTR.MaLR	7	-	-	-	-
chrY	10564913	A	n	GG	0	293	MLT-int.LTR.MaLR	48	-	-	-	-
chrY	10565078	C	n	GG	2.1258e-05	6	MLT-int.LTR.MaLR	113	-	-	-	-
chrY	10565191	T	n	CC	0.0085876	11	MLT-int.LTR.MaLR	113	rs1902306	single	+	CT
chrY	10565400	T	n	GG	7.8717e-39	26	MSTA.LTR.MaLR	10	-	-	-	-
chrY	10565410	C	n	TT	1.573e-32	22	MSTA.LTR.MaLR	10	-	-	-	-
chrY	10565431	A	n	CC	0.036812	7	MSTA.LTR.MaLR	21	-	-	-	-
chrY	10565489	G	n	CC	4.109e-05	15	MSTA.LTR.MaLR	27	-	-	-	-
chrY	10565516	T	n	AA	3.5083e-11	62	MSTA.LTR.MaLR	27	-	-	-	-
chrY	10566704	G	n	CC	2.6406e-42	21	L1M1.LINE.L1	1	-	-	-	-
chrY	10566705	A	n	TT	4.5151e-37	22	L1M1.LINE.L1	1	-	-	-	-
chrY	10566789	T	n	CC	1.2353e-15	38	CER.Satellite.Satellite	1	-	-	-	-
chrY	10566790	G	n	AA	2.8175e-12	37	CER.Satellite.Satellite	1	-	-	-	-
chrY	10566829	T	n	CC	7.7099e-157	80	CER.Satellite.Satellite	39	-	-	-	-
chrY	10566871	C	n	GG	2.0372e-23	27	CER.Satellite.Satellite	42	rs62609930	single	+	CG
chrY	10566933	A	n	CC	3.2509e-20	31	CER.Satellite.Satellite	38	-	-	-	-
chrY	10566971	C	n	GG	5.9926e-14	11	-	38	-	-	-	-
chrY	10567059	A	n	GG	9.1527e-59	27	L1MA2.LINE.L1	29	-	-	-	-
chrY	10567088	T	n	CC	5.2602e-07	5	L1MA2.LINE.L1	29	-	-	-	-
chrY	10567122	G	n	TT	0.16899	4	L1MA2.LINE.L1	34	-	-	-	-
chrY	10567182	A	n	GG	0.0027827	5	L1MA2.LINE.L1	32	-	-	-	-
chrY	10567214	C	n	TT	0.14627	7	L1MA2.LINE.L1	23	-	-	-	-
chrY	10567237	G	n	CC	1.1136e-06	7	L1MA2.LINE.L1	23	-	-	-	-
chrY	10567434	C	n	AA	6.2901e-05	5	THE1C.LTR.MaLR	4	-	-	-	-
chrY	10567438	T	n	GG	0.021555	6	THE1C.LTR.MaLR	4	-	-	-	-
chrY	10567448	T	n	GG	1.0372e-15	13	THE1C.LTR.MaLR	10	-	-	-	-
chrY	10567534	T	n	CC	1.065e-33	21	THE1C.LTR.MaLR	86	-	-	-	-
chrY	10567675	A	n	CC	3.0004e-16	54	THE1C.LTR.MaLR	9	-	-	-	-
chrY	10567684	G	n	AA	1.7744e-16	54	THE1C.LTR.MaLR	9	-	-	-	-
chrY	10567729	C	n	GG	0.020467	104	AluSg1.SINE.Alu	45	-	-	-	-
chrY	10567932	C	n	GG	9.4979e-79	101	AluSg1.SINE.Alu	186	rs72618791	single	+	CG
chrY	10568118	T	n	AA	3.1399e-05	3	L1MA2.LINE.L1	103	-	-	-	-
chrY	10568221	G	n	AA	0.011701	2	L1MA2.LINE.L1	54	-	-	-	-
chrY	10568275	C	n	GG	0.00015638	7	L1MA2.LINE.L1	6	-	-	-	-
chrY	10568281	T	n	CC	3.9336e-05	7	L1MA2.LINE.L1	6	-	-	-	-
chrY	10568322	T	n	CC	2.3032e-42	25	L1MA2.LINE.L1	17	-	-	-	-
chrY	10568339	A	n	TT	1.3303e-35	16	L1MA2.LINE.L1	17	-	-	-	-
chrY	10568395	G	n	CC	1.9287e-05	5	L1MA2.LINE.L1	56	-	-	-	-
chrY	10568475	T	n	CC	1.1605e-27	17	L1MA2.LINE.L1	80	-	-	-	-
chrY	10569165	T	n	CC	2.8032e-20	11	MER4D1.LTR.ERV1	13	rs62609934	single	+	CT
chrY	10569178	C	n	TT	2.4848e-08	13	MER4D1.LTR.ERV1	13	rs62609936	single	+	CT
chrY	10569424	G	n	TT	0.015312	2	-	34	rs62609938	single	+	GT
chrY	10569458	T	n	GG	1.7833e-33	13	-	34	rs62609939	single	+	GT
chrY	10569502	A	n	GG	3.1073e-119	58	-	44	-	-	-	-
chrY	10569566	A	n	GG	1.7514e-27	27	AluSx.SINE.Alu	64	-	-	-	-
chrY	10569684	G	n	AA	9.8978e-08	20	AluSx.SINE.Alu	34	-	-	-	-
chrY	10569718	T	n	CC	1.7968e-53	42	AluSx.SINE.Alu	34	-	-	-	-
chrY	10569790	A	n	GG	2.8316e-124	120	AluSx.SINE.Alu	72	rs72618794	single	+	AG
chrY	10570418	C	n	AA	3.7751e-10	7	-	4	-	-	-	-
chrY	10570422	T	n	CC	1.3358e-09	7	-	3	-	-	-	-
chrY	10570425	A	n	CC	7.9481e-09	7	-	3	-	-	-	-
chrY	10570520	G	n	AA	0.0072836	2	MER41D.LTR.ERV1	6	-	-	-	-
chrY	10570526	G	n	CC	0.015694	2	MER41D.LTR.ERV1	6	-	-	-	-
chrY	10570544	A	n	TT	0.023403	4	MER41D.LTR.ERV1	18	-	-	-	-
chrY	10570982	C	n	TT	2.9661e-108	72	-	43	rs4100146	single	+	CT
chrY	10571025	T	n	CC	3.7077e-12	61	-	43	rs4100148	single	+	CT
chrY	10571076	A	n	TT	9.5783e-14	13	-	51	-	-	-	-
chrY	10571459	G	n	CC	2.1235e-05	3	-	21	-	-	-	-
chrY	10571480	A	n	GG	4.4689e-31	15	-	21	-	-	-	-
chrY	10571706	G	n	AA	2.5214e-15	32	-	66	-	-	-	-
chrY	10571772	T	n	CC	1.1069e-100	59	-	66	-	-	-	-
chrY	10571883	A	n	GG	1.6649e-06	18	PRIMA41-int.LTR.ERV1	111	-	-	-	-
chrY	10572027	T	n	CC	1.5725e-127	84	LTR5_Hs.LTR.ERVK	17	-	-	-	-
chrY	10572044	A	n	GG	3.0844e-43	44	LTR5_Hs.LTR.ERVK	17	-	-	-	-
chrY	10572062	T	n	CC	4.8563e-15	18	LTR5_Hs.LTR.ERVK	18	-	-	-	-
chrY	10572119	A	n	GG	1.5264e-205	114	LTR5_Hs.LTR.ERVK	1	-	-	-	-
chrY	10572120	T	n	GG	2.0014e-195	116	LTR5_Hs.LTR.ERVK	1	-	-	-	-
chrY	10572214	T	n	GG	2.46e-36	32	LTR5_Hs.LTR.ERVK	94	-	-	-	-
chrY	10572450	T	n	CC	1.4518e-123	70	LTR5_Hs.LTR.ERVK	55	-	-	-	-
chrY	10572505	T	n	CC	0.00010493	25	LTR5_Hs.LTR.ERVK	55	-	-	-	-
chrY	10572569	A	n	GG	8.1432e-21	35	LTR5_Hs.LTR.ERVK	10	-	-	-	-
chrY	10572579	T	n	GG	0.00089154	28	LTR5_Hs.LTR.ERVK	10	-	-	-	-
chrY	10573028	T	n	CC	7.8339e-10	13	PRIMA41-int.LTR.ERV1	53	-	-	-	-
chrY	10573081	A	n	GG	8.1635e-09	6	PRIMA41-int.LTR.ERV1	6	rs73614868	single	+	AG
chrY	10573087	G	n	AA	6.42e-09	6	PRIMA41-int.LTR.ERV1	6	rs73614869	single	+	AG
chrY	10573098	T	n	GG	3.6074e-08	14	PRIMA41-int.LTR.ERV1	11	-	-	-	-
chrY	10573424	A	n	GG	0.040432	25	PRIMA41-int.LTR.ERV1	326	-	-	-	-
chrY	10573775	A	n	GG	5.7602e-170	107	PRIMA41-int.LTR.ERV1	71	rs62609942	single	+	AG
chrY	10573846	C	n	TT	4.4964e-36	59	PRIMA41-int.LTR.ERV1	71	-	-	-	-
chrY	10573990	A	n	CC	6.9144e-38	25	PRIMA41-int.LTR.ERV1	81	-	-	-	-
chrY	10574071	A	n	GG	2.1081e-08	14	PRIMA41-int.LTR.ERV1	81	-	-	-	-
chrY	10574372	G	n	TT	0.044782	14	PRIMA41-int.LTR.ERV1	75	-	-	-	-
chrY	10574447	T	n	AA	7.5561e-07	8	PRIMA41-int.LTR.ERV1	50	-	-	-	-
chrY	10574497	C	n	AA	0.087004	6	PRIMA41-int.LTR.ERV1	50	-	-	-	-
chrY	10574596	A	n	GG	0.029628	10	PRIMA41-int.LTR.ERV1	14	-	-	-	-
chrY	10574610	A	n	TT	8.6459e-14	14	PRIMA41-int.LTR.ERV1	14	-	-	-	-
chrY	10574691	T	n	CC	8.4019e-10	22	PRIMA41-int.LTR.ERV1	81	rs2168391	single	+	AG
chrY	10575107	A	n	GG	4.6537e-25	21	PRIMA41-int.LTR.ERV1	141	-	-	-	-
chrY	10575248	T	n	CC	6.6849e-43	42	PRIMA41-int.LTR.ERV1	141	-	-	-	-
chrY	10575843	A	n	TT	1.1184e-09	40	THE1B.LTR.MaLR	85	-	-	-	-
chrY	10575928	A	n	GG	2.4906e-156	121	AluSx.SINE.Alu	85	-	-	-	-
chrY	10576103	A	n	GG	2.5843e-45	25	AluSx.SINE.Alu	175	-	-	-	-
chrY	10576588	A	n	CC	5.2568e-05	11	PRIMA41-int.LTR.ERV1	28	rs71201473	single	-	AG
chrY	10576616	G	n	AA	7.7118e-19	40	PRIMA41-int.LTR.ERV1	28	-	-	-	-
chrY	10577150	A	n	GG	1.0104e-13	18	PRIMA41-int.LTR.ERV1	196	-	-	-	-
chrY	10577346	A	n	GG	4.7891e-148	113	PRIMA41-int.LTR.ERV1	12	rs35823793	single	-	CT
chrY	10577358	T	n	AA	1.062e-237	111	PRIMA41-int.LTR.ERV1	12	rs11492100	single	+	AT
chrY	10577407	T	n	CC	4.1849e-14	18	PRIMA41-int.LTR.ERV1	49	rs62609943	single	+	CT
chrY	10577486	T	n	CC	3.295e-15	9	PRIMA41-int.LTR.ERV1	33	-	-	-	-
chrY	10577519	T	n	CC	2.8855e-20	8	PRIMA41-int.LTR.ERV1	33	-	-	-	-
chrY	10577575	T	n	CC	0.012679	2	PRIMA41-int.LTR.ERV1	56	-	-	-	-
chrY	10577670	T	n	CC	1.2286e-07	8	PRIMA41-int.LTR.ERV1	95	-	-	-	-
chrY	10577771	T	n	CC	3.6031e-30	41	PRIMA41-int.LTR.ERV1	6	rs1836416	single	+	AC
chrY	10577777	T	n	CC	4.7801e-34	41	PRIMA41-int.LTR.ERV1	6	-	-	-	-
chrY	10578035	A	n	GG	4.7165e-93	147	-	43	-	-	-	-
chrY	10578078	T	n	CC	1.2451e-152	189	-	43	-	-	-	-
chrY	10578135	A	n	GG	4.4957e-23	13	-	57	rs10449118	single	+	AG
chrY	10581999	G	n	AA	7.129e-08	10	L1M1.LINE.L1	54	-	-	-	-
chrY	10582053	C	n	GG	7.6391e-11	6	L1M1.LINE.L1	54	-	-	-	-
chrY	10582593	T	n	GG	0.02099	2	L1M1.LINE.L1	95	rs73614874	single	+	GT
chrY	10582688	C	n	TT	3.6693e-06	3	L1M1.LINE.L1	95	-	-	-	-
chrY	10583866	T	n	AA	2.1792e-07	4	-	654	-	-	-	-
chrY	10584520	A	n	CC	3.9338e-285	130	-	89	rs62611163	single	+	AC
chrY	10584609	C	n	TT	2.0925e-20	26	-	8	-	-	-	-
chrY	10584617	C	n	GG	2.2171e-25	35	-	8	-	-	-	-
chrY	10584676	G	n	AA	3.2532e-30	28	-	55	-	-	-	-
chrY	10584731	T	n	GG	2.153e-22	14	-	19	rs34523110	single	-	CT
chrY	10584750	A	n	GG	1.3559e-07	4	-	19	-	-	-	-
chrY	10584950	C	n	TT	0.0042875	2	-	58	-	-	-	-
chrY	10585008	G	n	CC	0.024953	4	-	58	rs2337205	single	+	CG
chrY	10585090	A	n	GG	0.004201	4	L1PA7.LINE.L1	82	-	-	-	-
chrY	10585196	T	n	GG	3.974e-107	60	L1PA7.LINE.L1	106	-	-	-	-
chrY	10585554	T	n	CC	1.5795e-12	20	AluSp.SINE.Alu	42	-	-	-	-
chrY	10585596	T	n	CC	0	129	AluSp.SINE.Alu	42	-	-	-	-
chrY	10585639	A	n	GG	1.4376e-98	47	L1PA7.LINE.L1	43	-	-	-	-
chrY	10585963	A	n	CC	4.8484e-31	12	L1PA7.LINE.L1	39	rs62611164	single	+	AC
chrY	10586002	T	n	GG	2.3052e-05	8	L1PA7.LINE.L1	39	rs62611165	single	+	GT
chrY	10586556	G	n	AA	0.028385	2	L1PA7.LINE.L1	33	-	-	-	-
chrY	10586589	T	n	CC	8.2706e-06	9	L1PA7.LINE.L1	33	-	-	-	-
chrY	10586854	A	n	CC	6.6404e-13	11	L1PA7.LINE.L1	166	-	-	-	-
chrY	10587020	T	n	CC	2.4289e-14	10	L1PA7.LINE.L1	166	rs7350377	single	+	CT
chrY	10588498	A	n	CC	4.9439e-300	149	L1P3.LINE.L1	7	-	-	-	-
chrY	10588505	G	n	AA	2.3608e-224	128	L1P3.LINE.L1	7	-	-	-	-
chrY	10588639	T	n	GG	3.6768e-251	179	L1P3.LINE.L1	50	-	-	-	-
chrY	10588689	A	n	GG	5.3744e-70	64	L1P3.LINE.L1	50	-	-	-	-
chrY	10588824	T	n	AA	1.106e-139	104	L1P3.LINE.L1	5	-	-	-	-
chrY	10588829	A	n	GG	7.2668e-126	88	L1P3.LINE.L1	5	-	-	-	-
chrY	10588872	T	n	CC	3.0818e-25	30	L1P3.LINE.L1	3	rs73614881	single	+	CT
chrY	10588875	C	n	TT	1.2785e-27	31	L1P3.LINE.L1	3	-	-	-	-
chrY	10588973	T	n	CC	1.3411e-107	90	L1P3.LINE.L1	47	-	-	-	-
chrY	10589020	T	n	GG	5.6897e-05	65	L1P3.LINE.L1	26	rs73614882	single	+	GT
chrY	10589046	T	n	CC	0.17058	37	L1P3.LINE.L1	26	rs73614883	single	+	CT
chrY	10589257	A	n	GG	9.6867e-47	106	L1P3.LINE.L1	31	-	-	-	-
chrY	10589288	A	n	GG	1.9238e-154	117	L1P3.LINE.L1	31	rs71228259	single	-	CT
chrY	10589472	T	n	AA	7.4415e-49	44	L1P3.LINE.L1	70	-	-	-	-
chrY	10589542	G	n	CC	6.5131e-07	25	L1P3.LINE.L1	70	-	-	-	-
chrY	10589800	T	n	GG	3.2074e-60	35	-	258	-	-	-	-
chrY	10590176	G	n	AA	2.1145e-12	6	L1MC4a.LINE.L1	376	-	-	-	-
chrY	10590685	T	n	GG	2.6007e-180	68	-	5	-	-	-	-
chrY	10590690	T	n	GG	1.5493e-144	61	-	5	-	-	-	-
chrY	10591025	C	n	GG	1.0605e-49	56	-	25	-	-	-	-
chrY	10591050	T	n	GG	7.2843e-14	29	-	1	rs72619805	single	+	GT
chrY	10591051	C	n	GG	3.4371e-11	28	-	1	-	-	-	-
chrY	10591112	A	n	GG	0.002936	4	-	45	rs12164453	single	+	AG
chrY	10591157	A	n	GG	5.339e-117	56	-	45	-	-	-	-
chrY	10591257	A	n	CC	1.2598e-10	18	-	29	rs12164459	single	+	AC
chrY	10591286	A	n	CC	1.4433e-75	54	MSTD.LTR.MaLR	29	-	-	-	-
chrY	10591495	C	n	GG	1.5433e-44	51	MSTD.LTR.MaLR	12	-	-	-	-
chrY	10591507	T	n	CC	1.6912e-106	55	MSTD.LTR.MaLR	12	-	-	-	-
chrY	10591546	T	n	CC	5.792e-11	39	MSTD.LTR.MaLR	16	-	-	-	-
chrY	10591562	G	n	CC	0.00042123	31	MSTD.LTR.MaLR	16	-	-	-	-
chrY	10591784	C	n	GG	2.2452e-28	19	-	113	-	-	-	-
chrY	10591897	A	n	GG	1.4228e-33	13	-	113	-	-	-	-
chrY	10592341	T	n	CC	1.2915e-43	38	MLT1I.LTR.MaLR	1	-	-	-	-
chrY	10592342	T	n	GG	7.6652e-81	38	MLT1I.LTR.MaLR	1	-	-	-	-
chrY	10592451	T	n	GG	7.7148e-07	60	AluY.SINE.Alu	109	-	-	-	-
chrY	10592784	C	n	AA	4.1746e-44	54	MLT1I.LTR.MaLR	60	-	-	-	-
chrY	10592844	T	n	GG	0.00014499	24	MLT1I.LTR.MaLR	6	-	-	-	-
chrY	10592850	G	n	AA	0.057116	24	MLT1I.LTR.MaLR	6	-	-	-	-
chrY	10592939	T	n	AA	3.828e-15	335	-	5	-	-	-	-
chrY	10592944	C	n	GG	1.9107e-197	345	AluSx.SINE.Alu	5	-	-	-	-
chrY	10592992	A	n	GG	3.2553e-59	79	AluSx.SINE.Alu	48	-	-	-	-
chrY	10593366	A	n	GG	0.1209	23	-	16	-	-	-	-
chrY	10593382	A	n	GG	1.8918e-12	27	-	16	-	-	-	-
chrY	10593427	T	n	CC	1.5066e-10	16	-	45	rs73614893	single	+	CT
chrY	10593489	A	n	GG	4.8588e-13	8	-	62	-	-	-	-
chrY	10593571	T	n	GG	2.1945e-11	52	-	40	-	-	-	-
chrY	10593611	A	n	GG	1.8614e-133	104	-	23	-	-	-	-
chrY	10593634	T	n	GG	6.6383e-77	58	-	23	-	-	-	-
chrY	10593675	G	n	AA	0.047052	23	-	41	-	-	-	-
chrY	10593923	T	n	CC	4.3798e-120	136	-	179	rs68194425	single	+	CT
chrY	10594102	C	n	TT	7.7165e-186	163	-	44	-	-	-	-
chrY	10594146	T	n	CC	4.6952e-105	215	-	44	-	-	-	-
chrY	10594400	A	n	GG	3.5263e-27	26	-	83	-	-	-	-
chrY	10594483	T	n	CC	3.7394e-41	18	-	83	rs380338	single	+	CT
chrY	10594698	T	n	GG	5.6085e-100	53	MIR.SINE.MIR	11	rs62611169	single	+	GT
chrY	10594709	G	n	AA	2.8351e-10	21	MIR.SINE.MIR	11	-	-	-	-
chrY	10594751	A	n	CC	6.8965e-56	51	-	5	-	-	-	-
chrY	10594756	T	n	CC	9.4147e-58	57	-	5	-	-	-	-
chrY	10594792	T	n	CC	2.2469e-88	109	-	36	-	-	-	-
chrY	10594958	A	n	GG	7.2676e-12	34	-	2	-	-	-	-
chrY	10594960	G	n	AA	2.227e-16	35	-	2	-	-	-	-
chrY	10594988	A	n	GG	2.6306e-25	42	-	17	-	-	-	-
chrY	10595005	G	n	CC	2.1181e-76	81	-	17	-	-	-	-
chrY	10595165	C	n	GG	0.01421	18	-	160	-	-	-	-
chrY	10595370	T	n	CC	3.0036e-208	101	MLT1H.LTR.MaLR	75	-	-	-	-
chrY	10595445	T	n	GG	4.5769e-74	172	MLT1H.LTR.MaLR	75	-	-	-	-
chrY	10595525	A	n	CC	2.936e-107	70	-	27	-	-	-	-
chrY	10595552	A	n	TT	3.5385e-13	11	-	27	-	-	-	-
chrY	10595798	A	n	TT	1.2622e-24	29	THE1A.LTR.MaLR	171	-	-	-	-
chrY	10595969	A	n	GG	1.3382e-27	35	THE1A.LTR.MaLR	171	-	-	-	-
chrY	10596196	C	n	AA	9.8616e-20	14	L1ME4a.LINE.L1	227	rs62611172	single	+	AC
chrY	10596569	A	n	CC	1.832e-117	66	L1ME4a.LINE.L1	65	-	-	-	-
chrY	10596634	C	n	AA	7.1693e-13	57	-	6	rs73616504	single	+	AC
chrY	10596640	G	n	AA	3.389e-09	42	-	6	-	-	-	-
chrY	10596699	A	n	GG	9.0969e-28	82	-	5	-	-	-	-
chrY	10596704	A	n	TT	4.1415e-54	106	-	5	-	-	-	-
chrY	10596778	T	n	GG	1.9282e-06	33	-	74	rs1850201	single	+	GT
chrY	10597083	C	n	GG	4.3097e-05	11	-	109	-	-	-	-
chrY	10597192	A	n	CC	0.061717	2	-	4	-	-	-	-
chrY	10597196	G	n	TT	0.019966	2	-	1	-	-	-	-
chrY	10597197	T	n	GG	0.074901	2	-	1	-	-	-	-
chrY	10597342	C	n	TT	1.8291e-08	13	L1ME4a.LINE.L1	145	rs5014525	single	+	CT
chrY	10597514	T	n	GG	6.8952e-181	267	-	13	rs5014529	single	+	CT
chrY	10597527	A	n	GG	6.253e-169	233	-	13	rs5014530	single	+	AG
chrY	10597615	C	n	GG	0.070407	12	-	31	-	-	-	-
chrY	10597646	A	n	CC	0.31105	21	-	31	rs71235414	single	+	AC
chrY	10597747	A	n	GG	9.238e-06	3	-	101	-	-	-	-
chrY	10597896	C	n	TT	9.6265e-61	52	-	35	-	-	-	-
chrY	10597931	T	n	CC	1.0824e-77	44	-	35	-	-	-	-
chrY	10598024	A	n	GG	8.9576e-43	47	-	93	-	-	-	-
chrY	10598141	C	n	TT	1.0622e-05	96	-	7	rs62611173	single	+	CT
chrY	10598148	C	n	TT	1.3306e-160	106	-	7	rs62611174	single	+	CT
chrY	10598201	A	n	GG	0	215	-	53	rs62611175	single	+	AG
chrY	10598386	A	n	GG	5.8528e-43	61	-	5	rs4990842	single	+	AG
chrY	10598391	A	n	GG	6.6074e-56	57	-	5	rs2311689	single	+	AG
chrY	10598429	A	n	GG	7.7178e-273	135	-	15	-	-	-	-
chrY	10598444	A	n	CC	5.5943e-71	89	-	15	-	-	-	-
chrY	10598564	C	n	TT	6.0172e-05	7	MLT1A0.LTR.MaLR	120	-	-	-	-
chrY	10598973	A	n	TT	1.9069e-25	57	-	43	-	-	-	-
chrY	10599016	A	n	CC	2.6431e-27	57	-	11	-	-	-	-
chrY	10599027	A	n	GG	3.1931e-19	53	-	11	-	-	-	-
chrY	10599166	A	n	CC	2.4012e-15	44	-	139	-	-	-	-
chrY	10599614	G	n	AA	6.7656e-19	8	-	85	rs9786465	single	+	AG
chrY	10599699	T	n	GG	0.038872	2	L1MEc.LINE.L1	85	rs62611177	single	+	GT
chrY	10599902	T	n	CC	2.5356e-40	65	MSTA.LTR.MaLR	38	-	-	-	-
chrY	10599940	G	n	TT	6.3259e-114	112	MSTA.LTR.MaLR	4	-	-	-	-
chrY	10599944	A	n	GG	3.1146e-138	105	MSTA.LTR.MaLR	4	-	-	-	-
chrY	10599999	T	n	AA	7.7487e-09	20	MSTA.LTR.MaLR	42	-	-	-	-
chrY	10600041	T	n	CC	3.8273e-05	23	MSTA.LTR.MaLR	42	-	-	-	-
chrY	10600246	A	n	GG	1.6152e-66	37	AluSc.SINE.Alu	9	rs73616509	single	+	AG
chrY	10600255	T	n	CC	1.0073e-45	43	AluSc.SINE.Alu	1	-	-	-	-
chrY	10600256	C	n	TT	9.7477e-46	43	AluSc.SINE.Alu	1	-	-	-	-
chrY	10600477	T	n	CC	7.7313e-06	42	AluSc.SINE.Alu	2	-	-	-	-
chrY	10600479	T	n	CC	0.0059511	43	AluSc.SINE.Alu	2	-	-	-	-
chrY	10601308	G	n	CC	2.9269e-18	22	L1HS.LINE.L1	4	-	-	-	-
chrY	10601312	C	n	TT	8.4979e-29	24	L1HS.LINE.L1	4	-	-	-	-
chrY	10601443	G	n	TT	0.028408	6	MSTA.LTR.MaLR	101	-	-	-	-
chrY	10601544	T	n	GG	2.3469e-31	46	AluJ/FLAM.SINE.Alu	101	-	-	-	-
chrY	10602070	A	n	CC	1.5052e-80	39	L1MEc.LINE.L1	125	-	-	-	-
chrY	10602195	A	n	CC	7.1647e-07	4	L1MEc.LINE.L1	125	-	-	-	-
chrY	10602673	A	n	GG	0.0059872	4	L1MEc.LINE.L1	478	-	-	-	-
chrY	10603158	A	n	CC	6.349e-184	141	-	114	-	-	-	-
chrY	10603272	T	n	GG	2.4514e-268	137	-	1	-	-	-	-
chrY	10603273	T	n	CC	5.8041e-274	135	-	1	rs399232	single	-	AG
chrY	10603388	A	n	CC	1.8277e-51	54	-	8	-	-	-	-
chrY	10603396	G	n	CC	2.1975e-40	40	-	8	-	-	-	-
chrY	10603430	A	n	GG	1.9657e-118	54	-	34	-	-	-	-
chrY	10603693	G	n	CC	1.9107e-56	100	-	57	-	-	-	-
chrY	10603750	G	n	CC	4.6286e-14	136	-	24	-	-	-	-
chrY	10603774	G	n	CC	1.8175e-59	81	-	1	-	-	-	-
chrY	10603775	A	n	CC	1.1466e-70	82	-	1	-	-	-	-
chrY	10603929	G	n	AA	1.9152e-21	39	-	154	-	-	-	-
chrY	10604716	C	n	GG	3.2918e-14	11	-	42	rs1913832	single	-	AC
chrY	10604758	T	n	CC	3.4796e-48	22	-	42	-	-	-	-
chrY	10604903	G	n	AA	6.9907e-12	5	-	145	-	-	-	-
chrY	10605051	C	n	TT	2.6336e-14	10	-	148	rs5008355	single	+	CT
chrY	10605364	A	n	CC	0.0005507	16	FLAM_C.SINE.Alu	58	-	-	-	-
chrY	10605422	C	n	GG	0.00013618	70	FLAM_C.SINE.Alu	58	-	-	-	-
chrY	10605712	G	n	CC	2.1094e-46	34	-	87	rs2878939	single	-	AG
chrY	10605799	T	n	CC	2.3911e-48	41	L1MA9.LINE.L1	1	-	-	-	-
chrY	10605800	C	n	TT	8.2087e-39	37	L1MA9.LINE.L1	1	-	-	-	-
chrY	10606092	A	n	GG	1.8219e-37	74	AluSg1.SINE.Alu	292	-	-	-	-
chrY	10606831	G	n	AA	0.011359	9	L1MA9.LINE.L1	195	-	-	-	-
chrY	10607026	G	n	TT	3.1445e-05	3	L1MA9.LINE.L1	50	-	-	-	-
chrY	10607076	G	n	AA	0.019849	17	L1MA9.LINE.L1	50	-	-	-	-
chrY	10607450	G	n	AA	0.0081034	2	L1MA9.LINE.L1	374	-	-	-	-
chrY	10609612	T	n	AA	2.0201e-05	5	L1PA4.LINE.L1	74	-	-	-	-
chrY	10609686	C	n	GG	2.6157e-05	7	L1PA4.LINE.L1	74	-	-	-	-
chrY	10610028	T	n	AA	2.0908e-62	28	L1PA4.LINE.L1	342	-	-	-	-
chrY	10612869	T	n	GG	0.098995	9	L1PA4.LINE.L1	1121	-	-	-	-
chrY	10613990	T	n	CC	0.0074422	2	L1MA9.LINE.L1	15	-	-	-	-
chrY	10614005	C	n	AA	0.027246	2	L1MA9.LINE.L1	15	-	-	-	-
chrY	10614582	T	n	AA	0.028929	2	L1MA9.LINE.L1	4	-	-	-	-
chrY	10614586	T	n	GG	0.11764	2	L1MA9.LINE.L1	4	-	-	-	-
chrY	10614603	T	n	CC	0.069107	2	L1MA9.LINE.L1	17	-	-	-	-
chrY	10614646	A	n	TT	5.2926e-08	4	L1MA9.LINE.L1	43	rs2878909	single	+	AT
chrY	10615053	T	n	AA	3.7497e-11	5	-	407	-	-	-	-
chrY	10615594	T	n	CC	8.4423e-06	9	-	121	-	-	-	-
chrY	10615715	A	n	GG	7.3967e-05	7	-	17	-	-	-	-
chrY	10615732	G	n	TT	2.5501e-05	20	-	17	-	-	-	-
chrY	10615813	G	n	AA	3.4214e-06	5	-	81	-	-	-	-
chrY	10615990	C	n	TT	1.437e-25	81	MER5A.DNA.MER1_type	42	-	-	-	-
chrY	10616032	T	n	GG	7.8013e-19	51	AluJb.SINE.Alu	42	-	-	-	-
chrY	10616172	T	n	GG	2.0772e-279	138	-	140	rs409566	single	+	GT
chrY	10616411	G	n	AA	2.6379e-70	30	-	73	-	-	-	-
chrY	10616484	G	n	CC	3.4959e-08	109	-	73	-	-	-	-
chrY	10616843	T	n	CC	0.0015068	7	-	85	rs73616526	single	+	CT
chrY	10616928	T	n	CC	2.1822e-56	115	-	85	rs72619825	single	+	CT
chrY	10617029	C	n	TT	1.2126e-08	47	CT-rich.Low_complexity.Low_complexity	95	rs73616527	single	+	CT
chrY	10617124	C	n	GG	1.117e-11	29	CT-rich.Low_complexity.Low_complexity	95	-	-	-	-
chrY	10617777	A	n	GG	5.1876e-80	135	-	178	-	-	-	-
chrY	10617955	A	n	GG	4.5332e-10	49	-	28	-	-	-	-
chrY	10617983	A	n	GG	2.0802e-24	72	-	28	-	-	-	-
chrY	10618082	A	n	CC	0	275	-	75	-	-	-	-
chrY	10618157	T	n	CC	1.6475e-147	83	-	8	rs62611179	single	+	CT
chrY	10618165	C	n	TT	9.7388e-47	63	-	8	-	-	-	-
chrY	10618365	A	n	GG	8.9409e-32	36	-	46	-	-	-	-
chrY	10618411	T	n	CC	0.01	11	CT-rich.Low_complexity.Low_complexity	8	rs62608662	single	+	CT
chrY	10618419	C	n	AA	3.4424e-14	15	CT-rich.Low_complexity.Low_complexity	8	-	-	-	-
chrY	10618443	T	n	CC	1.2116e-144	74	CT-rich.Low_complexity.Low_complexity	24	-	-	-	-
chrY	10618641	T	n	CC	2.1187e-15	38	CT-rich.Low_complexity.Low_complexity	111	rs62608663	single	+	CT
chrY	10618752	A	n	GG	1.3692e-11	136	LSAU.Satellite.Satellite	38	-	-	-	-
chrY	10618790	T	n	CC	7.2004e-203	80	LSAU.Satellite.Satellite	38	rs9785831	single	+	CT
chrY	10618982	A	n	GG	7.4335e-30	91	LSAU.Satellite.Satellite	50	rs72619834	single	+	AG
chrY	10619032	C	n	GG	6.3255e-172	118	-	13	-	-	-	-
chrY	10619045	A	n	CC	1.118e-99	93	-	13	-	-	-	-
chrY	10619097	A	n	GG	7.5196e-187	131	-	52	-	-	-	-
chrY	10619231	T	n	CC	2.5564e-06	38	-	1	rs73616538	single	+	CT
chrY	10619232	A	n	TT	2.1003e-05	39	-	1	rs73616539	single	+	AT
chrY	10619361	T	n	GG	0.063623	28	-	36	-	-	-	-
chrY	10619397	T	n	GG	3.0895e-251	289	-	34	-	-	-	-
chrY	10619431	C	n	TT	1.6695e-125	108	-	34	-	-	-	-
chrY	10619598	T	n	CC	2.9854e-106	94	-	114	-	-	-	-
chrY	10619712	C	n	GG	1.2658e-65	108	-	33	-	-	-	-
chrY	10619745	A	n	TT	1.144e-227	175	-	4	-	-	-	-
chrY	10619749	C	n	GG	5.117e-180	180	-	4	-	-	-	-
chrY	10619801	T	n	CC	3.0967e-19	99	-	42	-	-	-	-
chrY	10619843	A	n	GG	7.9473e-15	105	-	42	-	-	-	-
chrY	10619950	T	n	GG	7.6534e-216	156	-	107	-	-	-	-
chrY	10620274	A	n	GG	2.7336e-76	149	LSAU.Satellite.Satellite	70	-	-	-	-
chrY	10620344	T	n	GG	1.4146e-117	133	LSAU.Satellite.Satellite	67	-	-	-	-
chrY	10620411	C	n	TT	1.6532e-35	47	-	4	rs73616543	single	+	CT
chrY	10620415	A	n	TT	0.00087108	39	-	4	-	-	-	-
chrY	10620464	T	n	CC	0.12412	33	-	49	-	-	-	-
chrY	10620519	T	n	GG	1.706e-17	40	-	55	-	-	-	-
chrY	10620591	G	n	CC	3.6349e-28	34	-	5	rs7474446	single	+	CG
chrY	10620596	C	n	TT	1.1738e-07	36	-	5	-	-	-	-
chrY	10620636	T	n	GG	1.4012e-37	40	-	40	-	-	-	-
chrY	10621497	G	n	CC	2.5096e-08	5	-	175	rs2313792	single	-	AG
chrY	10621672	G	n	AA	3.7931e-06	7	GA-rich.Low_complexity.Low_complexity	4	-	-	-	-
chrY	10621676	G	n	AA	5.0456e-12	7	GA-rich.Low_complexity.Low_complexity	4	-	-	-	-
chrY	10621838	A	n	CC	1.0978e-06	6	-	162	rs62608667	single	+	AC
chrY	10622011	T	n	AA	1.5847e-06	6	-	156	rs7358028	single	+	AT
chrY	10622167	T	n	CC	3.855e-39	97	-	156	-	-	-	-
chrY	10622649	A	n	GG	7.3048e-281	376	-	12	-	-	-	-
chrY	10622661	A	n	GG	2.9171e-287	400	-	12	-	-	-	-
chrY	10622860	G	n	TT	0.15448	55	CT-rich.Low_complexity.Low_complexity	6	-	-	-	-
chrY	10622866	G	n	CC	1.3956e-53	62	CT-rich.Low_complexity.Low_complexity	6	rs73616549	single	+	CG
chrY	10622943	T	n	CC	1.5564e-221	110	CT-rich.Low_complexity.Low_complexity	77	rs11492101	single	+	CT
chrY	10623076	A	n	GG	3.4732e-263	237	LSAU.Satellite.Satellite	87	-	-	-	-
chrY	10623163	T	n	GG	6.4834e-85	151	LSAU.Satellite.Satellite	49	-	-	-	-
chrY	10623212	A	n	CC	9.0304e-206	144	LSAU.Satellite.Satellite	49	-	-	-	-
chrY	10623328	A	n	GG	2.6884e-30	184	LSAU.Satellite.Satellite	84	-	-	-	-
chrY	10623412	C	n	TT	5.3727e-80	98	-	84	-	-	-	-
chrY	10623543	A	n	CC	2.6838e-18	36	-	131	-	-	-	-
chrY	10623948	A	n	TT	6.7989e-07	5	LTR5A.LTR.ERVK	405	-	-	-	-
chrY	10624405	T	n	CC	2.1747e-09	73	LTR5A.LTR.ERVK	4	-	-	-	-
chrY	10624409	A	n	GG	4.2994e-51	102	LTR5A.LTR.ERVK	4	-	-	-	-
chrY	10624507	G	n	TT	5.8707e-39	56	LTR5A.LTR.ERVK	4	-	-	-	-
chrY	10624511	A	n	GG	4.8285e-48	66	LTR5A.LTR.ERVK	4	rs73616552	single	+	AG
chrY	10624516	A	n	GG	4.8702e-48	72	LTR5A.LTR.ERVK	5	rs73616553	single	+	AG
chrY	10624560	A	n	GG	2.1038e-25	16	Tigger1.DNA.MER2_type	44	-	-	-	-
chrY	10624733	A	n	TT	1.8642e-10	5	Tigger1.DNA.MER2_type	36	-	-	-	-
chrY	10624769	T	n	CC	2.0774e-14	16	Tigger1.DNA.MER2_type	14	-	-	-	-
chrY	10624783	G	n	CC	1.2377e-19	17	Tigger1.DNA.MER2_type	14	-	-	-	-
chrY	10624976	T	n	CC	2.4223e-112	70	AluJo/FRAM.SINE.Alu	159	-	-	-	-
chrY	10625135	T	n	CC	2.1817e-20	58	AluY.SINE.Alu	149	rs67433977	single	+	CT
chrY	10625284	T	n	CC	1.4472e-06	95	AluY.SINE.Alu	51	rs73616555	single	+	CT
chrY	10625335	C	n	TT	3.9056e-193	109	-	6	rs4998740	single	+	CT
chrY	10625341	T	n	CC	3.0995e-190	108	-	6	rs4998741	single	+	CT
chrY	10625376	T	n	CC	9.1575e-14	10	-	35	rs4998742	single	+	CT
chrY	10625412	A	n	CC	2.2017e-48	19	-	3	rs4998743	single	+	AC
chrY	10625415	T	n	CC	4.2751e-30	19	-	3	rs4998744	single	+	CT
chrY	10625486	G	n	TT	0.0062221	6	-	71	rs5025480	single	+	GT
chrY	10625667	C	n	GG	0.23429	19	(TTG)n.Simple_repeat.Simple_repeat	6	rs73616556	single	+	CG
chrY	10625673	A	n	GG	3.2392e-06	19	(TTG)n.Simple_repeat.Simple_repeat	6	rs73616557	single	+	AG
chrY	10625884	A	n	GG	4.9307e-77	46	L1PB4.LINE.L1	103	-	-	-	-
chrY	10625987	T	n	CC	1.1886e-08	11	L1PB4.LINE.L1	18	rs62608671	single	+	CT
chrY	10626005	T	n	CC	1.1368e-19	8	-	18	rs62608672	single	+	CT
chrY	10626287	A	n	CC	3.9334e-13	21	-	47	-	-	-	-
chrY	10626334	G	n	CC	3.3855e-103	162	-	36	-	-	-	-
chrY	10626370	T	n	GG	1.3604e-90	74	-	15	rs73616564	single	+	GT
chrY	10626385	T	n	GG	2.419e-19	44	-	15	-	-	-	-
chrY	10626405	T	n	CC	0.00033167	64	-	11	-	-	-	-
chrY	10626416	A	n	GG	3.0521e-63	125	-	11	-	-	-	-
chrY	10626561	A	n	GG	3.626e-66	118	-	145	rs73616567	single	+	AG
chrY	10626734	T	n	CC	1.8989e-148	217	-	18	-	-	-	-
chrY	10626752	T	n	GG	2.1754e-49	116	-	18	-	-	-	-
chrY	10626838	G	n	CC	3.7768e-273	142	MER89.LTR.ERV1	86	-	-	-	-
chrY	10627595	T	n	AA	9.8233e-29	40	AluJb.SINE.Alu	32	-	-	-	-
chrY	10627627	T	n	CC	3.638e-210	211	AluJb.SINE.Alu	32	-	-	-	-
chrY	10627846	A	n	GG	0	405	AluJ/FLAM.SINE.Alu	5	-	-	-	-
chrY	10627851	G	n	AA	0	338	AluJ/FLAM.SINE.Alu	5	-	-	-	-
chrY	10627903	T	n	CC	1.1418e-115	149	-	52	-	-	-	-
chrY	10628082	T	n	GG	3.9508e-85	91	AluJo.SINE.Alu	24	-	-	-	-
chrY	10628106	G	n	TT	8.1454e-170	161	AluJo.SINE.Alu	2	-	-	-	-
chrY	10628108	T	n	CC	1.9823e-292	164	AluJo.SINE.Alu	2	-	-	-	-
chrY	10628564	A	n	CC	6.5537e-14	39	-	181	-	-	-	-
chrY	10628745	G	n	CC	2.5857e-14	28	-	7	-	-	-	-
chrY	10628752	T	n	CC	3.1007e-15	29	-	7	-	-	-	-
chrY	10628937	C	n	GG	1.1638e-31	85	-	46	rs73616575	single	+	CG
chrY	10628983	T	n	GG	7.4232e-241	105	-	37	-	-	-	-
chrY	10629020	A	n	GG	1.6333e-11	22	-	37	-	-	-	-
chrY	10629210	A	n	GG	1.3684e-60	100	L1PREC2.LINE.L1	37	-	-	-	-
chrY	10629247	A	n	GG	1.0679e-264	314	L1PREC2.LINE.L1	13	-	-	-	-
chrY	10629260	A	n	GG	0	700	L1PREC2.LINE.L1	13	-	-	-	-
chrY	10629351	T	n	AA	0	166	L1PREC2.LINE.L1	28	-	-	-	-
chrY	10629379	G	n	CC	0	485	L1PREC2.LINE.L1	15	-	-	-	-
chrY	10629394	A	n	CC	0	288	L1PREC2.LINE.L1	15	-	-	-	-
chrY	10629496	C	n	GG	2.9917e-12	76	-	30	-	-	-	-
chrY	10629526	C	n	TT	2.3582e-87	533	-	12	rs62608675	single	+	CT
chrY	10629538	G	n	AA	3.218e-280	673	-	5	rs62608676	single	+	AG
chrY	10629543	A	n	GG	4.6756e-264	680	-	5	rs62608677	single	+	AG
chrY	10629568	A	n	CC	4.7193e-189	85	-	2	-	-	-	-
chrY	10629570	T	n	CC	2.1716e-76	69	-	1	-	-	-	-
chrY	10629571	C	n	GG	2.7971e-152	61	-	1	-	-	-	-
chrY	10629639	T	n	CC	1.1259e-171	223	AluSx.SINE.Alu	6	rs62608678	single	+	CT
chrY	10629645	A	n	GG	0	265	AluSx.SINE.Alu	6	rs62608679	single	+	AG
chrY	10629651	A	n	GG	4.0219e-75	296	AluSx.SINE.Alu	6	-	-	-	-
chrY	10629691	A	n	GG	9.038e-68	72	AluSx.SINE.Alu	13	-	-	-	-
chrY	10629704	T	n	GG	0	384	AluSx.SINE.Alu	13	rs686398	single	-	CT
chrY	10629735	A	n	GG	7.4151e-34	115	AluSx.SINE.Alu	31	-	-	-	-
chrY	10629767	T	n	CC	0.063137	21	AluSx.SINE.Alu	7	-	-	-	-
chrY	10629774	T	n	GG	4.9831e-27	30	AluSx.SINE.Alu	3	-	-	-	-
chrY	10629777	T	n	CC	2.2703e-51	29	AluSx.SINE.Alu	3	-	-	-	-
chrY	10629865	T	n	CC	3.475e-105	346	AluSx.SINE.Alu	25	-	-	-	-
chrY	10629890	A	n	GG	1.6211e-72	155	-	1	-	-	-	-
chrY	10629891	T	n	CC	1.087e-143	123	-	1	-	-	-	-
chrY	10629900	A	n	CC	6.7636e-44	117	-	4	-	-	-	-
chrY	10629904	T	n	CC	4.3257e-286	223	-	4	-	-	-	-
chrY	10629923	A	n	GG	0	990	-	19	-	-	-	-
chrY	10629949	T	n	GG	0	1892	-	25	rs62608680	single	+	GT
chrY	10629974	T	n	GG	0	530	-	12	rs62608681	single	+	GT
chrY	10629986	C	n	GG	3.4196e-198	161	AluSp/q.SINE.Alu	12	-	-	-	-
chrY	10630595	A	n	GG	3.4379e-52	25	(GAAAA)n.Simple_repeat.Simple_repeat	40	-	-	-	-
chrY	10630635	A	n	GG	3.9002e-82	35	CT-rich.Low_complexity.Low_complexity	38	rs62635767	single	+	AG
chrY	10630673	A	n	GG	0	168	CT-rich.Low_complexity.Low_complexity	38	rs62635768	single	+	AG
chrY	10630784	A	n	CC	6.8605e-09	12	CT-rich.Low_complexity.Low_complexity	5	rs1761107	single	+	CT
chrY	10630789	T	n	AA	4.9608e-10	11	CT-rich.Low_complexity.Low_complexity	2	rs1761107	single	+	CT
chrY	10630791	C	n	TT	7.9158e-05	15	CT-rich.Low_complexity.Low_complexity	2	rs1761107	single	+	CT
chrY	10630820	G	n	CC	0.0027744	10	L1M4b.LINE.L1	15	rs1761107	single	+	CT
chrY	10630835	A	n	CC	0.0096345	10	L1M4b.LINE.L1	15	rs1761107	single	+	CT
chrY	10631011	T	n	AA	8.9227e-07	12	-	14	-	-	-	-
chrY	10631025	T	n	CC	5.4558e-19	16	CT-rich.Low_complexity.Low_complexity	14	-	-	-	-
chrY	10631135	T	n	CC	2.8827e-91	90	CT-rich.Low_complexity.Low_complexity	19	-	-	-	-
chrY	10631154	C	n	TT	0	428	CT-rich.Low_complexity.Low_complexity	19	-	-	-	-
chrY	10631207	T	n	CC	1.9463e-20	30	CT-rich.Low_complexity.Low_complexity	53	-	-	-	-
chrY	10631436	T	n	CC	4.3712e-27	39	CT-rich.Low_complexity.Low_complexity	19	-	-	-	-
chrY	10631455	G	n	AA	1.6824e-55	35	CT-rich.Low_complexity.Low_complexity	19	-	-	-	-
chrY	10631529	C	n	TT	6.407e-05	7	L1M4c.LINE.L1	74	-	-	-	-
chrY	10631666	A	n	TT	7.4831e-60	34	L1M4c.LINE.L1	29	rs71288125	deletion	+	-TC
chrY	10631695	G	n	CC	2.0921e-05	9	L1M4c.LINE.L1	26	rs62608698	single	+	CG
chrY	10631721	G	n	AA	0	307	L1M4c.LINE.L1	7	rs62608699	single	+	AG
chrY	10631728	T	n	GG	0	393	-	7	rs62608700	single	+	GT
chrY	10631862	A	n	GG	0	1151	MER39B.LTR.ERV1	12	-	-	-	-
chrY	10631874	A	n	GG	1.2963e-16	403	MER39B.LTR.ERV1	2	-	-	-	-
chrY	10631876	A	n	GG	1.5234e-109	315	MER39B.LTR.ERV1	2	-	-	-	-
chrY	10632013	G	n	AA	3.7104e-14	15	-	137	-	-	-	-
chrY	10632155	T	n	CC	2.4279e-57	84	AluSx.SINE.Alu	46	rs73616578	single	+	CT
chrY	10632201	A	n	CC	4.3014e-23	340	AluSx.SINE.Alu	46	-	-	-	-
chrY	10632282	A	n	GG	0	2157	AluSx.SINE.Alu	5	-	-	-	-
chrY	10632287	G	n	AA	0	2042	AluSx.SINE.Alu	5	-	-	-	-
chrY	10632310	T	n	GG	6.2351e-199	385	AluSx.SINE.Alu	23	-	-	-	-
chrY	10632420	T	n	CC	3.486e-08	129	-	8	-	-	-	-
chrY	10632428	A	n	GG	5.4039e-67	277	-	8	-	-	-	-
chrY	10632441	C	n	GG	0	2099	-	1	-	-	-	-
chrY	10632442	T	n	CC	0	2324	-	1	-	-	-	-
chrY	10632443	G	n	CC	0	2568	-	1	-	-	-	-
chrY	10632506	A	n	CC	0	941	-	4	rs73616579	single	+	AC
chrY	10632510	G	n	CC	0	623	-	4	rs73616580	single	+	CG
chrY	10632559	T	n	CC	0	744	-	1	-	-	-	-
chrY	10632560	A	n	GG	0	665	-	1	-	-	-	-
chrY	10632569	G	n	CC	1.4226e-233	171	-	9	rs12171814	single	+	CG
chrY	10632778	A	n	CC	0	1043	-	5	-	-	-	-
chrY	10632783	C	n	TT	0	828	-	5	-	-	-	-
chrY	10632790	C	n	GG	0	510	-	7	-	-	-	-
chrY	10632856	T	n	GG	1.312e-34	90	-	66	-	-	-	-
chrY	10633009	T	n	GG	0.053159	83	-	2	-	-	-	-
chrY	10633011	T	n	CC	0	182	-	2	-	-	-	-
chrY	10633055	A	n	GG	0	673	-	1	-	-	-	-
chrY	10633056	A	n	GG	0	578	-	1	-	-	-	-
chrY	10633061	T	n	CC	0	183	-	5	-	-	-	-
chrY	10633218	T	n	CC	3.155e-277	213	-	8	-	-	-	-
chrY	10633226	T	n	CC	0	177	-	8	-	-	-	-
chrY	10633286	A	n	GG	0.0061736	2	-	60	-	-	-	-
chrY	10633395	G	n	AA	0.27681	14	-	109	-	-	-	-
chrY	10633599	T	n	CC	0	204	-	64	-	-	-	-
chrY	10633663	A	n	CC	1.8773e-70	42	CT-rich.Low_complexity.Low_complexity	2	rs62608704	single	+	AC
chrY	10633665	T	n	CC	3.4977e-66	48	CT-rich.Low_complexity.Low_complexity	2	-	-	-	-
chrY	10633700	C	n	TT	0	239	CT-rich.Low_complexity.Low_complexity	29	rs62608705	single	+	CT
chrY	10633729	C	n	TT	3.7089e-76	73	CT-rich.Low_complexity.Low_complexity	29	-	-	-	-
chrY	10633884	A	n	CC	8.6209e-103	45	HAL1.LINE.L1	41	-	-	-	-
chrY	10633925	A	n	GG	0	287	HAL1.LINE.L1	41	-	-	-	-
chrY	10634070	T	n	CC	0	260	HAL1.LINE.L1	3	-	-	-	-
chrY	10634073	C	n	GG	2.0415e-07	279	HAL1.LINE.L1	3	-	-	-	-
chrY	10634332	T	n	GG	4.9048e-08	9	HAL1.LINE.L1	32	-	-	-	-
chrY	10634364	G	n	CC	9.9172e-55	31	HAL1.LINE.L1	32	-	-	-	-
chrY	10634530	G	n	TT	0	315	L1M4c.LINE.L1	5	-	-	-	-
chrY	10634535	T	n	GG	0	270	L1M4c.LINE.L1	5	-	-	-	-
chrY	10634545	C	n	TT	2.8495e-159	104	L1M4c.LINE.L1	10	-	-	-	-
chrY	10634591	A	n	CC	2.7726e-07	11	L1M4c.LINE.L1	46	-	-	-	-
chrY	10634757	T	n	CC	1.1634e-166	77	L1M4c.LINE.L1	166	-	-	-	-
chrY	10635066	A	n	GG	0.0013122	44	L2.LINE.L2	30	-	-	-	-
chrY	10635096	T	n	CC	0	172	L2.LINE.L2	1	-	-	-	-
chrY	10635097	C	n	GG	0	172	L2.LINE.L2	1	-	-	-	-
chrY	10635155	C	n	TT	3.4706e-65	50	L1MD.LINE.L1	20	-	-	-	-
chrY	10635175	G	n	AA	0	282	L1MD.LINE.L1	5	rs62608707	single	+	AG
chrY	10635180	C	n	TT	0	460	L1MD.LINE.L1	5	-	-	-	-
chrY	10635207	A	n	GG	0	2875	L1MD.LINE.L1	27	rs62608708	single	+	AG
chrY	10635244	A	n	CC	0	4880	L1MD.LINE.L1	32	rs62608709	single	+	AC
chrY	10635276	T	n	CC	0	1354	-	18	rs10449119	single	+	CT
chrY	10635294	T	n	CC	1.6604e-103	336	-	18	rs62608710	single	+	CT
chrY	10635317	A	n	CC	1.0546e-93	115	-	23	-	-	-	-
chrY	10635341	T	n	CC	0	301	-	2	-	-	-	-
chrY	10635343	C	n	GG	0	320	-	2	-	-	-	-
chrY	10635350	T	n	CC	0	322	-	7	rs7474413	single	+	CT
chrY	10635381	A	n	GG	2.1906e-243	254	-	31	rs71271457	single	+	AG
chrY	10635443	G	n	CC	3.0743e-253	225	-	5	-	-	-	-
chrY	10635448	A	n	CC	1.2541e-49	158	-	5	-	-	-	-
chrY	10635537	A	n	GG	0.022508	39	-	89	-	-	-	-
chrY	10635648	T	n	CC	1.2836e-65	220	-	20	-	-	-	-
chrY	10635668	A	n	CC	2.4417e-122	85	-	7	-	-	-	-
chrY	10635675	T	n	CC	1.5559e-66	74	-	7	-	-	-	-
chrY	10635862	A	n	CC	3.1448e-94	104	-	2	-	-	-	-
chrY	10635864	G	n	AA	6.3966e-228	133	-	1	-	-	-	-
chrY	10635865	C	n	GG	4.9762e-231	144	-	1	-	-	-	-
chrY	10635921	G	n	AA	1.1172e-16	71	-	56	-	-	-	-
chrY	10636034	T	n	GG	0.0021067	16	-	15	-	-	-	-
chrY	10636049	T	n	GG	3.9587e-19	15	AluSg/x.SINE.Alu	15	-	-	-	-
chrY	10636375	A	n	CC	2.2324e-37	17	-	14	-	-	-	-
chrY	10636389	G	n	AA	3.4933e-17	10	-	2	-	-	-	-
chrY	10636391	G	n	TT	0.013902	5	-	2	-	-	-	-
chrY	10636468	T	n	CC	0.0054655	2	-	43	-	-	-	-
chrY	10636511	T	n	GG	8.0027e-11	7	-	43	rs9645176	single	+	GT
chrY	10636696	T	n	GG	0	485	-	1	rs62608727	single	+	GT
chrY	10636697	T	n	GG	0	494	-	1	rs62608728	single	+	GT
chrY	10636707	A	n	GG	0	664	-	10	rs62608729	single	+	AG
chrY	10636751	A	n	GG	1.5328e-168	90	-	6	rs35010867	in-del	+	-T
chrY	10636757	T	n	CC	1.3175e-12	27	-	6	-	-	-	-
chrY	10637371	A	n	GG	2.5549e-77	28	-	3	-	-	-	-
chrY	10637374	A	n	GG	4.4086e-86	31	-	3	-	-	-	-
chrY	10637377	T	n	GG	1.883e-89	32	-	3	-	-	-	-
chrY	10637401	T	n	CC	7.4926e-06	3	-	3	-	-	-	-
chrY	10637404	A	n	CC	4.3122e-05	3	-	3	-	-	-	-
chrY	10638168	T	n	CC	3.8697e-184	115	-	10	-	-	-	-
chrY	10638178	T	n	CC	0	283	-	1	-	-	-	-
chrY	10638179	A	n	GG	0	289	-	1	rs3994095	in-del	-	-TT
chrY	10638212	T	n	CC	3.1339e-13	36	-	33	-	-	-	-
chrY	10638782	T	n	CC	1.4086e-05	11	-	6	-	-	-	-
chrY	10638788	A	n	GG	3.6167e-16	40	-	6	-	-	-	-
chrY	10638807	T	n	CC	5.3909e-135	409	-	19	-	-	-	-
chrY	10639032	A	n	GG	0.0029578	3	-	68	-	-	-	-
chrY	10639100	T	n	CC	3.2703e-21	20	-	68	-	-	-	-
chrY	10639190	T	n	GG	4.5362e-213	76	-	1	-	-	-	-
chrY	10639191	T	n	GG	7.2301e-213	76	-	1	-	-	-	-
chrY	10639203	A	n	GG	1.8942e-135	54	-	12	rs3208661	single	+	AG
chrY	10639307	A	n	CC	3.1142e-16	35	-	14	-	-	-	-
chrY	10639321	T	n	CC	1.8685e-18	21	-	14	-	-	-	-
chrY	10639339	T	n	CC	0.20801	12	-	18	-	-	-	-
chrY	10639497	T	n	CC	1.7775e-08	6	-	15	-	-	-	-
chrY	10639512	A	n	GG	6.0667e-25	18	-	15	-	-	-	-
chrY	10639545	A	n	GG	0	899	-	3	rs1058347	single	+	AG
chrY	10639548	A	n	GG	0	893	-	3	rs1058340	single	+	AG
chrY	10639564	A	n	GG	0	550	-	16	rs1058317	single	+	AG
chrY	10639582	T	n	CC	7.5452e-08	7	-	1	-	-	-	-
chrY	10639583	G	n	AA	4.1637e-08	6	-	1	-	-	-	-
chrY	10639622	C	n	TT	0	374	-	6	rs62608733	single	+	CT
chrY	10639628	A	n	CC	0	543	-	6	rs1058254	single	+	AC/G
chrY	10639640	T	n	AA	0	679	-	12	rs1058228	single	+	AT
chrY	10639679	T	n	CC	0	501	-	10	rs63749736	single	+	CT
chrY	10639689	T	n	CC	0	328	-	10	rs1058208	single	+	CT
chrY	10639756	G	n	AA	6.6486e-56	39	-	2	-	-	-	-
chrY	10639758	T	n	CC	3.9646e-79	41	-	1	rs71269503	in-del	+	-G
chrY	10639759	A	n	GG	2.5284e-58	41	-	1	-	-	-	-
chrY	10639781	A	n	GG	0	198	-	22	-	-	-	-
chrY	10639819	A	n	GG	7.521e-43	59	-	11	-	-	-	-
chrY	10639830	A	n	GG	4.3983e-07	24	-	11	rs1058105	single	+	AG
chrY	10639867	C	n	GG	2.9592e-67	64	-	12	-	-	-	-
chrY	10639879	G	n	CC	1.5215e-264	161	-	12	-	-	-	-
chrY	10641255	A	n	GG	1.6829e-84	98	-	127	-	-	-	-
chrY	10641382	T	n	GG	7.7951e-89	91	LTR54B.LTR.ERV1	7	-	-	-	-
chrY	10641389	T	n	CC	1.5708e-10	205	LTR54B.LTR.ERV1	7	-	-	-	-
chrY	10641413	T	n	CC	0	1723	LTR54B.LTR.ERV1	9	-	-	-	-
chrY	10641422	T	n	CC	0	2246	LTR54B.LTR.ERV1	9	-	-	-	-
chrY	10641450	T	n	CC	0	2845	-	9	-	-	-	-
chrY	10641459	T	n	CC	0	2463	-	9	-	-	-	-
chrY	10641540	A	n	CC	0	899	-	1	-	-	-	-
chrY	10641541	C	n	AA	0	892	-	1	-	-	-	-
chrY	10641564	T	n	CC	6.0813e-133	138	-	1	-	-	-	-
chrY	10641565	G	n	AA	2.806e-101	136	-	1	-	-	-	-
chrY	10641716	A	n	GG	0	185	-	2	-	-	-	-
chrY	10641718	A	n	CC	0	184	-	2	-	-	-	-
chrY	10641744	A	n	GG	1.7224e-71	52	-	7	-	-	-	-
chrY	10641751	T	n	CC	3.9066e-122	63	-	7	-	-	-	-
chrY	10641762	T	n	CC	8.4331e-21	115	-	11	-	-	-	-
chrY	10641792	G	n	CC	0	836	AluJb.SINE.Alu	19	-	-	-	-
chrY	10641811	T	n	CC	1.1533e-173	129	AluJb.SINE.Alu	19	-	-	-	-
chrY	10641962	C	n	AA	1.334e-201	208	-	58	-	-	-	-
chrY	10642020	T	n	CC	2.0315e-293	132	-	7	rs62608737	single	+	CT
chrY	10642027	T	n	AA	2.6388e-242	104	-	7	rs62608738	single	+	AT
chrY	10642227	A	n	GG	1.0261e-05	38	AluSp.SINE.Alu	200	-	-	-	-
chrY	10642650	T	n	GG	1.3731e-233	1287	AluY.SINE.Alu	19	rs62608739	single	+	GT
chrY	10642669	G	n	CC	4.7987e-206	1580	AluY.SINE.Alu	19	-	-	-	-
chrY	10642700	T	n	AA	1.2788e-76	70	-	31	-	-	-	-
chrY	10643080	T	n	GG	1.8098e-248	221	-	4	-	-	-	-
chrY	10643084	T	n	CC	1.5244e-68	286	-	4	-	-	-	-
chrY	10643507	A	n	GG	3.1559e-301	652	-	8	-	-	-	-
chrY	10643515	T	n	CC	0	1286	-	5	-	-	-	-
chrY	10643520	T	n	CC	0	1793	-	5	rs62608740	single	+	CT
chrY	10643557	G	n	TT	6.0635e-121	337	-	1	-	-	-	-
chrY	10643558	A	n	GG	2.8169e-87	257	-	1	-	-	-	-
chrY	10644915	A	n	GG	0	304	SSU-rRNA_Hsa.rRNA.rRNA	17	-	-	-	-
chrY	10644932	G	n	CC	0	283	SSU-rRNA_Hsa.rRNA.rRNA	8	-	-	-	-
chrY	10644940	C	n	AA	0	195	SSU-rRNA_Hsa.rRNA.rRNA	8	-	-	-	-
chrY	10645030	T	n	GG	0.023955	27	SSU-rRNA_Hsa.rRNA.rRNA	13	-	-	-	-
chrY	10645043	A	n	GG	1.7097e-237	392	SSU-rRNA_Hsa.rRNA.rRNA	2	-	-	-	-
chrY	10645045	A	n	CC	2.433e-170	479	SSU-rRNA_Hsa.rRNA.rRNA	2	-	-	-	-
chrY	10645069	A	n	GG	0	2276	SSU-rRNA_Hsa.rRNA.rRNA	1	-	-	-	-
chrY	10645070	A	n	GG	0	2258	SSU-rRNA_Hsa.rRNA.rRNA	1	-	-	-	-
chrY	10645103	A	n	GG	1.3692e-09	334	SSU-rRNA_Hsa.rRNA.rRNA	33	-	-	-	-
chrY	10645367	G	n	CC	0	328	SSU-rRNA_Hsa.rRNA.rRNA	10	-	-	-	-
chrY	10645377	C	n	GG	0	384	SSU-rRNA_Hsa.rRNA.rRNA	4	-	-	-	-
chrY	10645381	T	n	CC	0	386	SSU-rRNA_Hsa.rRNA.rRNA	4	-	-	-	-
chrY	10645423	A	n	GG	6.3623e-190	69	SSU-rRNA_Hsa.rRNA.rRNA	9	-	-	-	-
chrY	10645432	T	n	CC	6.948e-122	47	SSU-rRNA_Hsa.rRNA.rRNA	9	-	-	-	-
chrY	10645448	G	n	CC	0.0061622	13	SSU-rRNA_Hsa.rRNA.rRNA	16	rs62608741	single	+	CG
chrY	10645486	A	n	GG	0	1120	SSU-rRNA_Hsa.rRNA.rRNA	2	-	-	-	-
chrY	10645488	A	n	GG	0	1005	SSU-rRNA_Hsa.rRNA.rRNA	2	-	-	-	-
chrY	10645509	A	n	GG	2.1186e-61	215	SSU-rRNA_Hsa.rRNA.rRNA	21	-	-	-	-
chrY	10645597	A	n	GG	0	209	SSU-rRNA_Hsa.rRNA.rRNA	3	-	-	-	-
chrY	10645600	A	n	GG	1.0208e-306	174	SSU-rRNA_Hsa.rRNA.rRNA	3	-	-	-	-
chrY	10645612	T	n	CC	4.0421e-94	80	SSU-rRNA_Hsa.rRNA.rRNA	12	-	-	-	-
chrY	10645839	T	n	GG	1.1343e-36	39	SSU-rRNA_Hsa.rRNA.rRNA	30	-	-	-	-
chrY	10645869	C	n	TT	8.8083e-184	122	SSU-rRNA_Hsa.rRNA.rRNA	19	-	-	-	-
chrY	10645888	T	n	GG	0	361	SSU-rRNA_Hsa.rRNA.rRNA	19	-	-	-	-
chrY	10645914	T	n	AA	0	394	SSU-rRNA_Hsa.rRNA.rRNA	22	-	-	-	-
chrY	10645936	A	n	GG	8.8426e-23	87	SSU-rRNA_Hsa.rRNA.rRNA	22	-	-	-	-
chrY	10646087	A	n	GG	0	749	SSU-rRNA_Hsa.rRNA.rRNA	17	rs62608742	single	+	AG
chrY	10646104	T	n	CC	0	1342	SSU-rRNA_Hsa.rRNA.rRNA	2	rs62608743	single	+	CT
chrY	10646106	T	n	CC	0	1430	SSU-rRNA_Hsa.rRNA.rRNA	2	rs62608744	single	+	CT
chrY	10646131	T	n	CC	0	1514	SSU-rRNA_Hsa.rRNA.rRNA	24	-	-	-	-
chrY	10646155	G	n	CC	1.6629e-313	210	SSU-rRNA_Hsa.rRNA.rRNA	24	-	-	-	-
chrY	10646228	T	n	CC	9.3551e-25	26	SSU-rRNA_Hsa.rRNA.rRNA	4	-	-	-	-
chrY	10646232	G	n	CC	1.3548e-40	30	SSU-rRNA_Hsa.rRNA.rRNA	4	-	-	-	-
chrY	10646268	A	n	GG	0	1183	SSU-rRNA_Hsa.rRNA.rRNA	8	-	-	-	-
chrY	10646276	A	n	GG	0	830	SSU-rRNA_Hsa.rRNA.rRNA	3	-	-	-	-
chrY	10646279	A	n	GG	0	698	SSU-rRNA_Hsa.rRNA.rRNA	3	-	-	-	-
chrY	10646361	T	n	CC	0	242	SSU-rRNA_Hsa.rRNA.rRNA	13	-	-	-	-
chrY	10646374	A	n	GG	2.3149e-287	185	SSU-rRNA_Hsa.rRNA.rRNA	8	-	-	-	-
chrY	10646382	G	n	CC	5.2675e-109	117	SSU-rRNA_Hsa.rRNA.rRNA	8	-	-	-	-
chrY	10646438	A	n	CC	3.3623e-57	104	SSU-rRNA_Hsa.rRNA.rRNA	6	-	-	-	-
chrY	10646444	G	n	CC	0	239	SSU-rRNA_Hsa.rRNA.rRNA	6	-	-	-	-
chrY	10646452	T	n	GG	0	276	SSU-rRNA_Hsa.rRNA.rRNA	8	-	-	-	-
chrY	10646482	T	n	CC	0	144	SSU-rRNA_Hsa.rRNA.rRNA	3	-	-	-	-
chrY	10646485	C	n	GG	0	142	SSU-rRNA_Hsa.rRNA.rRNA	3	-	-	-	-
chrY	10646544	T	n	CC	7.1209e-133	95	SSU-rRNA_Hsa.rRNA.rRNA	4	-	-	-	-
chrY	10646548	A	n	CC	3.3595e-253	133	SSU-rRNA_Hsa.rRNA.rRNA	4	-	-	-	-
chrY	10646560	T	n	CC	3.9552e-269	282	SSU-rRNA_Hsa.rRNA.rRNA	12	-	-	-	-
chrY	10646585	T	n	CC	0	685	SSU-rRNA_Hsa.rRNA.rRNA	25	-	-	-	-
chrY	10647790	C	n	GG	0	524	-	6	rs5005399	single	+	CG
chrY	10647796	T	n	CC	5.6705e-318	486	-	6	rs5005398	single	+	CT
chrY	10647806	T	n	CC	0	728	-	10	rs5005397	single	+	CT
chrY	10647818	T	n	CC	0	1137	-	12	rs5005396	single	+	CT
chrY	10648191	A	n	GG	1.3521e-54	22	-	373	rs67021730	single	+	AG
chrY	10649188	C	n	GG	1.6572e-25	18	-	7	-	-	-	-
chrY	10649195	A	n	CC	2.395e-22	17	-	7	-	-	-	-
chrY	10649730	T	n	GG	3.5363e-13	12	L1MD2.LINE.L1	6	-	-	-	-
chrY	10649736	A	n	GG	6.0812e-05	11	L1MD2.LINE.L1	6	-	-	-	-
chrY	10649777	G	n	AA	0.014803	10	L1MD2.LINE.L1	41	rs612356	single	-	AT
chrY	10650517	C	n	GG	7.8114e-05	11	-	283	-	-	-	-
chrY	10650800	A	n	CC	0.024067	4	ALR/Alpha.Satellite.centr	113	-	-	-	-
chrY	10650913	A	n	GG	2.2595e-28	13	ALR/Alpha.Satellite.centr	113	-	-	-	-
chrY	10652287	A	n	TT	8.9965e-14	10	ALR/Alpha.Satellite.centr	127	-	-	-	-
chrY	10652414	G	n	CC	1.8686e-14	17	ALR/Alpha.Satellite.centr	48	-	-	-	-
chrY	10652462	A	n	CC	1.0507e-12	10	ALR/Alpha.Satellite.centr	48	rs62608747	single	+	AC
chrY	10652526	C	n	GG	0.016832	4	ALR/Alpha.Satellite.centr	64	-	-	-	-
chrY	10652974	A	n	GG	0.047036	15	ALR/Alpha.Satellite.centr	173	rs34665619	single	-	CT
chrY	10653147	T	n	CC	6.9847e-06	8	ALR/Alpha.Satellite.centr	8	rs71263442	single	-	AG
chrY	10653155	C	n	TT	7.1634e-12	7	ALR/Alpha.Satellite.centr	8	-	-	-	-
chrY	10653209	A	n	GG	5.5424e-19	15	ALR/Alpha.Satellite.centr	21	-	-	-	-
chrY	10653230	A	n	GG	1.4257e-22	13	ALR/Alpha.Satellite.centr	21	rs62608750	single	+	AG
chrY	10653440	C	n	AA	6.7602e-27	52	ALR/Alpha.Satellite.centr	43	-	-	-	-
chrY	10653483	A	n	GG	3.1387e-28	38	ALR/Alpha.Satellite.centr	43	-	-	-	-
chrY	10653657	A	n	GG	7.2645e-19	14	ALR/Alpha.Satellite.centr	30	-	-	-	-
chrY	10653687	A	n	TT	2.132e-07	10	ALR/Alpha.Satellite.centr	30	-	-	-	-
chrY	10653757	T	n	CC	3.8273e-27	28	ALR/Alpha.Satellite.centr	41	rs4638050	single	+	CT
chrY	10653798	T	n	AA	1.2576e-78	31	ALR/Alpha.Satellite.centr	29	-	-	-	-
chrY	10653827	C	n	GG	1.4484e-77	30	ALR/Alpha.Satellite.centr	29	-	-	-	-
chrY	10653856	C	n	TT	3.8525e-14	16	ALR/Alpha.Satellite.centr	25	-	-	-	-
chrY	10653881	T	n	CC	6.4751e-10	11	ALR/Alpha.Satellite.centr	25	rs62608751	single	+	CT
chrY	10654172	C	n	AA	0.0071668	14	ALR/Alpha.Satellite.centr	269	rs71262879	deletion	+	AAG
chrY	10654441	T	n	CC	0.023599	4	ALR/Alpha.Satellite.centr	85	rs71262879	deletion	+	AAG
chrY	10654526	G	n	AA	0.057497	18	ALR/Alpha.Satellite.centr	85	rs71262879	deletion	+	AAG
chrY	10654941	G	n	CC	0.071388	5	ALR/Alpha.Satellite.centr	120	-	-	-	-
chrY	10655061	C	n	AA	0.042701	12	ALR/Alpha.Satellite.centr	120	-	-	-	-
chrY	10658036	A	n	CC	0.023318	4	ALR/Alpha.Satellite.centr	36	-	-	-	-
chrY	10658072	G	n	AA	5.0623e-09	4	ALR/Alpha.Satellite.centr	36	-	-	-	-
chrY	10658218	T	n	CC	4.5404e-31	34	ALR/Alpha.Satellite.centr	3	-	-	-	-
chrY	10658221	C	n	GG	1.0061e-33	35	ALR/Alpha.Satellite.centr	3	-	-	-	-
chrY	10659022	G	n	CC	0.014779	2	ALR/Alpha.Satellite.centr	459	-	-	-	-
chrY	10659481	G	n	AA	0.0051465	4	ALR/Alpha.Satellite.centr	78	-	-	-	-
chrY	10659559	A	n	GG	0.027285	4	ALR/Alpha.Satellite.centr	12	-	-	-	-
chrY	10659571	T	n	CC	0.0062045	4	ALR/Alpha.Satellite.centr	12	-	-	-	-
chrY	10659963	G	n	AA	0.0031464	8	ALR/Alpha.Satellite.centr	28	-	-	-	-
chrY	10659991	T	n	CC	1.3407e-08	4	ALR/Alpha.Satellite.centr	28	-	-	-	-
chrY	10660366	G	n	AA	6.8298e-09	4	ALR/Alpha.Satellite.centr	375	rs35990437	in-del	+	-A
chrY	10661554	A	n	CC	5.834e-14	12	ALR/Alpha.Satellite.centr	1188	-	-	-	-
chrY	10664866	A	n	TT	3.9226e-08	4	ALR/Alpha.Satellite.centr	6	-	-	-	-
chrY	10664872	C	n	AA	2.5796e-08	4	ALR/Alpha.Satellite.centr	6	-	-	-	-
chrY	10665400	T	n	CC	1.0006e-05	12	ALR/Alpha.Satellite.centr	528	-	-	-	-
chrY	10666440	T	n	CC	0.0028354	4	ALR/Alpha.Satellite.centr	371	-	-	-	-
chrY	10666811	T	n	CC	2.3035e-05	4	ALR/Alpha.Satellite.centr	166	-	-	-	-
chrY	10666977	T	n	AA	1.6208e-06	8	ALR/Alpha.Satellite.centr	166	rs3975861	single	-	GT
chrY	10667433	A	n	GG	0.0049965	6	ALR/Alpha.Satellite.centr	157	-	-	-	-
chrY	10667590	T	n	CC	5.2482e-08	8	ALR/Alpha.Satellite.centr	11	-	-	-	-
chrY	10667601	T	n	AA	0.18424	4	ALR/Alpha.Satellite.centr	11	-	-	-	-
chrY	10671066	A	n	TT	0.002265	4	ALR/Alpha.Satellite.centr	236	-	-	-	-
chrY	10671302	C	n	AA	1.4368e-277	147	ALR/Alpha.Satellite.centr	8	-	-	-	-
chrY	10671310	C	n	GG	0	160	ALR/Alpha.Satellite.centr	8	-	-	-	-
chrY	10672718	G	n	CC	5.1819e-11	5	ALR/Alpha.Satellite.centr	1165	rs36169119	single	+	AC
chrY	10673883	T	n	GG	0.069745	8	ALR/Alpha.Satellite.centr	111	-	-	-	-
chrY	10673994	G	n	AA	3.7809e-06	8	ALR/Alpha.Satellite.centr	110	-	-	-	-
chrY	10674104	A	n	GG	6.602e-06	3	ALR/Alpha.Satellite.centr	110	-	-	-	-
chrY	10674959	T	n	CC	5.7328e-41	26	ALR/Alpha.Satellite.centr	855	-	-	-	-
chrY	10676397	G	n	CC	0.014962	2	ALR/Alpha.Satellite.centr	1438	-	-	-	-
chrY	10678312	A	n	TT	2.8528e-70	66	ALR/Alpha.Satellite.centr	643	-	-	-	-
chrY	10678955	C	n	AA	5.5539e-22	10	ALR/Alpha.Satellite.centr	643	rs72487242	in-del	-	-TT
chrY	10682753	C	n	AA	4.1683e-14	8	ALR/Alpha.Satellite.centr	3	-	-	-	-
chrY	10682756	T	n	GG	2.0661e-05	5	ALR/Alpha.Satellite.centr	3	-	-	-	-
chrY	10685361	A	n	TT	1.549e-05	19	ALR/Alpha.Satellite.centr	2605	-	-	-	-
chrY	10691570	A	n	GG	0.0053798	4	ALR/Alpha.Satellite.centr	6209	rs10048436	single	-	AG
chrY	10700757	G	n	AA	0.0072729	4	ALR/Alpha.Satellite.centr	1011	rs73510304	single	-	CT
chrY	10701768	A	n	TT	6.326e-05	9	ALR/Alpha.Satellite.centr	1011	rs2566496	single	+	AT
chrY	10712832	G	n	AA	0.0021765	4	ALR/Alpha.Satellite.centr	1721	-	-	-	-
chrY	11214553	G	n	CC	7.232e-95	151	-	1	-	-	-	-
chrY	11232820	G	n	TT	0.01617	10	ALR/Alpha.Satellite.centr	14	-	-	-	-
chrY	11232834	A	n	CC	1.7033e-05	9	ALR/Alpha.Satellite.centr	14	-	-	-	-
chrY	11237472	A	n	TT	1.5744e-11	18	ALR/Alpha.Satellite.centr	4638	-	-	-	-
chrY	11242168	A	n	GG	3.1185e-11	6	ALR/Alpha.Satellite.centr	1298	-	-	-	-
chrY	11243466	G	n	CC	4.6561e-84	41	ALR/Alpha.Satellite.centr	1298	-	-	-	-
chrY	11245122	G	n	TT	1.2353e-10	30	ALR/Alpha.Satellite.centr	275	-	-	-	-
chrY	11245397	T	n	AA	0.015135	4	ALR/Alpha.Satellite.centr	275	-	-	-	-
chrY	11247853	T	n	GG	7.3325e-191	937	(CATTC)n.Simple_repeat.Simple_repeat	3	-	-	-	-
chrY	11247856	C	n	GG	4.3948e-252	405	(CATTC)n.Simple_repeat.Simple_repeat	3	-	-	-	-
chrY	11249043	T	n	CC	7.3536e-06	4	(CACTC)n.Simple_repeat.Simple_repeat	1187	-	-	-	-
chrY	11251096	T	n	CC	4.6639e-182	591	(CATTC)n.Satellite.Satellite	1100	-	-	-	-
chrY	11252196	A	n	CC	2.1438e-09	70	-	37	-	-	-	-
chrY	11252233	T	n	AA	2.9153e-147	125	(CATTC)n.Satellite.Satellite	37	-	-	-	-
chrY	11252457	G	n	TT	0.089829	2	(CATTC)n.Satellite.Satellite	139	rs66678066	single	+	GT
chrY	11252596	G	n	TT	4.9701e-31	12	(CATTC)n.Satellite.Satellite	139	rs67706542	single	+	GT
chrY	11252898	T	n	CC	0.21738	100	(CATTC)n.Satellite.Satellite	302	-	-	-	-
chrY	11253572	G	n	AA	1.2167e-14	6	(CATTC)n.Satellite.Satellite	141	rs62610038	single	+	AG
chrY	11253713	C	n	TT	4.4453e-63	77	Alu.SINE.Alu	141	-	-	-	-
chrY	11654672	T	n	CC	2.4305e-38	15	Alu.SINE.Alu	211	rs62610050	single	+	CT
chrY	11654883	T	n	CC	0.035936	117	(CATTC)n.Simple_repeat.Simple_repeat	134	-	-	-	-
chrY	11655017	A	n	CC	2.7738e-203	270	(CATTC)n.Satellite.Satellite	17	-	-	-	-
chrY	11655034	A	n	TT	5.4988e-35	55	(CATTC)n.Satellite.Satellite	17	-	-	-	-
chrY	11655106	A	n	CC	1.4796e-14	32	-	72	-	-	-	-
chrY	11655288	A	n	CC	6.1911e-08	66	(CATTC)n.Satellite.Satellite	182	-	-	-	-
chrY	11664429	T	n	AA	4.4027e-11	5	(ATG)n.Simple_repeat.Simple_repeat	8055	-	-	-	-
chrY	11672484	G	n	AA	1.1061e-08	4	-	4238	-	-	-	-
chrY	11676722	T	n	AA	0.0002307	3	L1PB4.LINE.L1	4169	-	-	-	-
chrY	11680891	C	n	TT	1.1538e-05	3	-	1987	-	-	-	-
chrY	11682878	G	n	TT	4.0361e-27	11	GA-rich.Low_complexity.Low_complexity	1	-	-	-	-
chrY	11682879	G	n	TT	2.906e-28	11	GA-rich.Low_complexity.Low_complexity	1	-	-	-	-
chrY	11687884	C	n	TT	3.5504e-38	18	-	5005	-	-	-	-
chrY	11698658	C	n	TT	1.627e-05	3	-	900	rs66529508	single	+	CT
chrY	11699558	G	n	CC	6.3844e-136	192	AluSx.SINE.Alu	1	-	-	-	-
chrY	11699559	G	n	TT	4.555e-138	195	AluSx.SINE.Alu	1	-	-	-	-
chrY	11699759	G	n	TT	6.0816e-134	95	AluSx.SINE.Alu	200	rs62600227	single	+	GT
chrY	11700038	A	n	GG	7.8826e-06	15	MER89-int.LTR.ERV1	12	-	-	-	-
chrY	11700050	T	n	GG	2.1294e-17	14	MER89-int.LTR.ERV1	12	-	-	-	-
chrY	11700145	A	n	CC	0.015838	5	MER89-int.LTR.ERV1	95	-	-	-	-
chrY	11700262	C	n	GG	0.038445	4	MER89-int.LTR.ERV1	5	-	-	-	-
chrY	11700267	C	n	GG	0.017629	2	MER89-int.LTR.ERV1	5	-	-	-	-
chrY	11700345	C	n	TT	6.0191e-51	25	MLT1A0.LTR.MaLR	66	rs62600230	single	+	CT
chrY	11700411	C	n	TT	1.8173e-70	58	MLT1A0.LTR.MaLR	66	rs62600232	single	+	CT
chrY	11700489	G	n	AA	3.009e-63	53	MLT1A0.LTR.MaLR	78	rs62600233	single	+	AG
chrY	11700768	A	n	CC	1.7813e-05	5	MER89-int.LTR.ERV1	1	-	-	-	-
chrY	11700769	G	n	AA	3.564e-06	5	MER89-int.LTR.ERV1	1	-	-	-	-
chrY	11701056	A	n	CC	4.9514e-308	194	-	116	rs434357	single	+	AC
chrY	11701172	G	n	CC	4.2435e-85	65	-	11	rs62600237	single	+	CG
chrY	11701183	T	n	CC	1.6324e-23	47	-	11	rs62600238	single	+	CT
chrY	11701295	T	n	CC	2.1143e-101	157	-	112	-	-	-	-
chrY	11701683	A	n	CC	1.3353e-80	182	-	388	-	-	-	-
chrY	11702082	T	n	CC	1.4394e-05	69	-	15	-	-	-	-
chrY	11702097	A	n	GG	1.8996e-08	62	-	15	-	-	-	-
chrY	11702337	G	n	AA	6.2844e-20	136	AluSg.SINE.Alu	187	-	-	-	-
chrY	11702524	T	n	CC	7.1987e-218	149	AluY.SINE.Alu	127	-	-	-	-
chrY	11702651	T	n	GG	1.3149e-19	10	AluY.SINE.Alu	127	-	-	-	-
chrY	11702861	A	n	GG	2.3124e-50	37	-	12	rs62600244	single	+	AG
chrY	11702873	C	n	TT	5.3337e-67	57	-	3	rs62600245	single	+	CT
chrY	11702876	T	n	CC	3.3689e-103	72	-	3	rs62600246	single	+	CT
chrY	11703049	C	n	GG	1.2594e-52	69	-	47	rs62600247	single	+	CG
chrY	11703096	G	n	TT	8.2864e-279	245	-	47	-	-	-	-
chrY	11703157	T	n	CC	1.1462e-118	111	-	61	-	-	-	-
chrY	11703563	C	n	TT	1.6306e-173	165	-	69	-	-	-	-
chrY	11703632	C	n	GG	1.927e-110	343	-	69	-	-	-	-
chrY	11703952	A	n	GG	8.3254e-92	96	-	25	-	-	-	-
chrY	11703977	T	n	GG	1.6145e-253	135	-	25	-	-	-	-
chrY	11704065	A	n	GG	0	255	-	88	rs72619883	single	+	AG
chrY	11704365	T	n	CC	7.4217e-263	227	-	4	-	-	-	-
chrY	11704369	A	n	CC	0	218	-	4	rs62600248	single	+	AC
chrY	11704564	T	n	CC	8.0037e-161	92	-	7	rs62600249	single	+	CT
chrY	11704571	C	n	TT	1.029e-80	91	-	7	-	-	-	-
chrY	11704650	G	n	AA	2.8108e-98	87	-	79	rs2959679	single	+	AG
chrY	11704986	C	n	AA	3.2446e-10	27	-	67	-	-	-	-
chrY	11705053	T	n	CC	2.5254e-243	123	-	67	rs62597861	single	+	CT
chrY	11705150	C	n	TT	3.5956e-79	74	-	30	-	-	-	-
chrY	11705180	T	n	CC	1.5508e-43	38	-	30	rs62597862	single	+	CT
chrY	11705256	T	n	AA	6.8269e-106	54	-	76	-	-	-	-
chrY	11705386	C	n	AA	2.0928e-44	156	-	61	rs2959690	single	+	AC
chrY	11705447	G	n	TT	5.2656e-75	195	-	61	-	-	-	-
chrY	11705853	G	n	AA	0.013266	23	-	177	-	-	-	-
chrY	11706030	A	n	GG	0.00070085	28	-	177	-	-	-	-
chrY	11706401	G	n	CC	9.7941e-144	103	-	67	-	-	-	-
chrY	11706468	C	n	AA	0	338	-	67	rs62597868	single	+	AC
chrY	11706587	T	n	CC	2.0252e-22	14	-	3	rs62597869	single	+	CT
chrY	11706590	A	n	GG	3.7983e-27	13	-	3	rs62597870	single	+	AG
chrY	11706769	A	n	CC	4.0479e-53	94	-	44	-	-	-	-
chrY	11706813	G	n	AA	1.0197e-96	77	-	44	rs62597873	single	+	AG
chrY	11707260	C	n	AA	2.9264e-05	79	-	45	rs62597877	single	+	AC
chrY	11707305	T	n	CC	8.6706e-11	78	-	45	rs62597878	single	+	CT
chrY	11707591	C	n	GG	9.0263e-92	121	-	9	-	-	-	-
chrY	11707600	G	n	AA	1.3425e-59	104	-	9	-	-	-	-
chrY	11707609	A	n	GG	4.1926e-67	82	-	9	-	-	-	-
chrY	11707642	G	n	CC	3.0756e-17	19	-	33	-	-	-	-
chrY	11707815	C	n	TT	4.2796e-27	35	-	34	-	-	-	-
chrY	11707849	A	n	GG	3.8084e-37	25	-	24	-	-	-	-
chrY	11707873	A	n	GG	6.6438e-58	56	-	18	-	-	-	-
chrY	11707891	A	n	GG	7.2095e-66	46	-	18	rs62597880	single	+	AG
chrY	11707924	G	n	AA	3.4632e-139	83	-	33	rs62597881	single	+	AG
chrY	11708004	T	n	CC	0.024598	21	-	80	-	-	-	-
chrY	11708274	G	n	CC	2.0489e-15	32	MSTA.LTR.MaLR	13	-	-	-	-
chrY	11708287	T	n	CC	1.6321e-85	57	MSTA.LTR.MaLR	13	rs72619888	single	+	CT
chrY	11708676	T	n	GG	2.0778e-51	49	-	25	rs62597884	single	+	GT
chrY	11708701	T	n	GG	3.2168e-89	49	-	25	rs62597885	single	+	GT
chrY	11708953	A	n	GG	1.6665e-92	51	-	20	rs2933787	single	-	CT
chrY	11708973	A	n	GG	3.4136e-65	36	-	20	rs62597888	single	+	AG
chrY	11709047	C	n	TT	6.6126e-53	43	-	28	rs62597898	single	+	CT
chrY	11709075	A	n	GG	2.5137e-16	24	-	28	rs62597899	single	+	AG
chrY	11709156	T	n	GG	2.1839e-158	93	-	38	rs62597900	single	+	GT
chrY	11709194	G	n	AA	1.4619e-136	85	-	38	rs62597901	single	+	AG
chrY	11709306	G	n	AA	0.00015654	23	-	7	-	-	-	-
chrY	11709313	A	n	GG	6.4187e-20	25	-	7	rs62597902	single	+	AG
chrY	11709481	C	n	GG	1.1622e-259	165	-	9	rs9723225	single	+	CG
chrY	11709490	A	n	GG	1.1137e-48	227	-	9	rs9723226	single	+	AG
chrY	11709504	A	n	GG	0	248	-	14	-	-	-	-
chrY	11709679	T	n	CC	4.2089e-76	82	-	117	rs62597904	single	+	CT
chrY	11709796	C	n	TT	2.5366e-63	55	-	36	rs62597906	single	+	CT
chrY	11709832	T	n	CC	1.3238e-256	145	-	36	rs62597907	single	+	CT
chrY	11709916	C	n	TT	4.0687e-251	139	-	84	rs62597909	single	+	CT
chrY	11710249	A	n	GG	2.1184e-109	75	-	333	-	-	-	-
chrY	11711072	A	n	GG	2.5704e-17	11	-	276	-	-	-	-
chrY	11711348	T	n	GG	0.05008	14	-	276	-	-	-	-
chrY	11711629	T	n	CC	4.0653e-89	65	-	109	-	-	-	-
chrY	11711738	G	n	TT	8.9442e-178	204	-	57	-	-	-	-
chrY	11711795	T	n	CC	4.9794e-47	109	-	25	-	-	-	-
chrY	11711820	A	n	GG	1.073e-217	153	-	25	rs62597913	single	+	AG
chrY	11711879	T	n	CC	7.0235e-262	245	-	16	-	-	-	-
chrY	11711895	A	n	CC	1.295e-76	170	-	16	-	-	-	-
chrY	11711927	T	n	CC	3.3263e-90	91	-	9	-	-	-	-
chrY	11711936	A	n	GG	6.8529e-153	111	-	9	rs72619890	single	+	AG
chrY	11712146	T	n	CC	0	325	-	129	rs62597914	single	+	CT
chrY	11712275	A	n	GG	1.0184e-197	202	GSATII.Satellite.centr	14	rs62597916	single	+	AG
chrY	11712289	G	n	CC	5.8769e-25	134	GSATII.Satellite.centr	14	-	-	-	-
chrY	11712667	G	n	CC	0	277	GSATII.Satellite.centr	56	rs72487374	in-del	-	-CC
chrY	11712723	G	n	CC	1.2436e-177	589	GSATII.Satellite.centr	56	rs72487374	in-del	-	-CC
chrY	11712841	A	n	TT	1.6312e-248	137	GSATII.Satellite.centr	118	rs72487374	in-del	-	-CC
chrY	11713034	G	n	CC	6.01e-08	32	GSATII.Satellite.centr	76	rs72487374	in-del	-	-CC
chrY	11713110	G	n	AA	1.0014e-118	223	GSATII.Satellite.centr	76	rs72487374	in-del	-	-CC
chrY	11713189	C	n	TT	3.4176e-91	121	GSATII.Satellite.centr	77	rs72487374	in-del	-	-CC
chrY	11713266	A	n	CC	3.1668e-212	145	GSATII.Satellite.centr	7	rs72487374	in-del	-	-CC
chrY	11713273	T	n	CC	9.88131e-324	193	GSATII.Satellite.centr	7	rs72487374	in-del	-	-CC
chrY	11713577	T	n	CC	0	588	GSATII.Satellite.centr	61	rs62597923	single	+	CT
chrY	11713638	T	n	CC	0	251	GSATII.Satellite.centr	61	rs62597924	single	+	CT
chrY	11713781	A	n	GG	1.9849e-18	364	GSATII.Satellite.centr	47	rs62597925	single	+	AG
chrY	11713828	A	n	TT	1.2335e-49	120	GSATII.Satellite.centr	36	-	-	-	-
chrY	11713864	C	n	AA	3.6679e-23	299	GSATII.Satellite.centr	36	-	-	-	-
chrY	11713915	C	n	TT	2.2963e-98	300	GSATII.Satellite.centr	1	rs62597926	single	+	CT
chrY	11713916	A	n	GG	1.3088e-207	301	GSATII.Satellite.centr	1	rs62597927	single	+	AG
chrY	11713922	T	n	GG	2.4853e-213	315	GSATII.Satellite.centr	6	rs62597928	single	+	GT
chrY	11713950	C	n	GG	1.5875e-94	123	GSATII.Satellite.centr	28	rs62597929	single	+	CG
chrY	11714105	C	n	GG	4.242e-72	662	GSATII.Satellite.centr	38	rs62597930	single	+	CG
chrY	11714143	T	n	CC	0	719	GSATII.Satellite.centr	38	rs62597934	single	+	CT
chrY	11714387	A	n	GG	0	296	GSATII.Satellite.centr	244	rs62597937	single	+	AG
chrY	11714708	A	n	TT	4.6537e-181	221	GSATII.Satellite.centr	167	rs72619900	single	+	AT
chrY	11714875	C	n	TT	1.517e-15	408	GSATII.Satellite.centr	72	-	-	-	-
chrY	11714947	G	n	AA	2.8946e-155	116	GSATII.Satellite.centr	72	-	-	-	-
chrY	11715081	G	n	AA	4.089e-178	176	GSATII.Satellite.centr	11	-	-	-	-
chrY	11715092	G	n	AA	4.0442e-246	282	GSATII.Satellite.centr	11	-	-	-	-
chrY	11715215	C	n	TT	1.3253e-25	128	GSATII.Satellite.centr	78	-	-	-	-
chrY	11715293	C	n	TT	4.9569e-285	284	GSATII.Satellite.centr	78	-	-	-	-
chrY	11715391	G	n	CC	3.9608e-219	471	GSATII.Satellite.centr	50	rs72620604	single	+	CG
chrY	11715441	G	n	TT	5.0447e-37	48	GSATII.Satellite.centr	50	rs62597941	single	+	GT
chrY	11715514	A	n	GG	0	360	GSATII.Satellite.centr	24	rs62597942	single	+	AG
chrY	11715538	G	n	AA	2.5335e-103	576	GSATII.Satellite.centr	24	-	-	-	-
chrY	11715620	T	n	GG	2.0253e-05	118	GSATII.Satellite.centr	71	rs72620605	single	+	GT
chrY	11715691	C	n	GG	0.0043824	64	GSATII.Satellite.centr	71	-	-	-	-
chrY	11715919	A	n	CC	3.6559e-144	161	GSATII.Satellite.centr	28	rs72620606	single	+	AC
chrY	11715947	A	n	CC	2.2646e-163	248	GSATII.Satellite.centr	27	rs62597943	single	+	AC
chrY	11715974	A	n	GG	4.9793e-261	288	GSATII.Satellite.centr	16	-	-	-	-
chrY	11715990	T	n	CC	7.8857e-194	194	GSATII.Satellite.centr	16	rs62597944	single	+	CT
chrY	11716138	C	n	GG	4.0193e-07	168	GSATII.Satellite.centr	103	rs62597945	single	+	CG
chrY	11716241	A	n	TT	1.2693e-20	162	GSATII.Satellite.centr	67	-	-	-	-
chrY	11716308	C	n	AA	1.3895e-124	240	GSATII.Satellite.centr	14	-	-	-	-
chrY	11716322	C	n	TT	7.0971e-214	413	GSATII.Satellite.centr	14	-	-	-	-
chrY	11716417	A	n	GG	2.3229e-287	206	GSATII.Satellite.centr	95	rs4919793	single	+	AG
chrY	11716544	C	n	GG	2.5935e-214	386	GSATII.Satellite.centr	121	rs62597946	single	+	CG
chrY	11716665	A	n	CC	2.6768e-28	22	GSATII.Satellite.centr	49	rs62597947	single	+	AC
chrY	11716714	G	n	AA	5.2327e-304	252	GSATII.Satellite.centr	49	rs62597948	single	+	AG
chrY	11716772	T	n	CC	3.1966e-281	319	GSATII.Satellite.centr	18	-	-	-	-
chrY	11716790	A	n	CC	0	285	GSATII.Satellite.centr	18	-	-	-	-
chrY	11716893	T	n	CC	2.7647e-58	51	GSATII.Satellite.centr	69	rs62597949	single	+	CT
chrY	11716962	A	n	CC	0	230	GSATII.Satellite.centr	69	rs62597950	single	+	AC
chrY	11717155	G	n	AA	8.5035e-257	215	GSATII.Satellite.centr	5	rs62597951	single	+	AG
chrY	11717160	A	n	GG	6.566e-184	191	GSATII.Satellite.centr	5	rs62597952	single	+	AG
chrY	11717165	T	n	CC	1.2178e-123	172	GSATII.Satellite.centr	5	-	-	-	-
chrY	11717196	G	n	AA	9.8459e-123	201	GSATII.Satellite.centr	20	-	-	-	-
chrY	11717216	A	n	GG	4.6582e-19	77	GSATII.Satellite.centr	20	-	-	-	-
chrY	11717493	A	n	GG	0	377	GSATII.Satellite.centr	40	rs4441329	single	+	AG
chrY	11717533	A	n	GG	3.1194e-220	116	GSATII.Satellite.centr	40	rs4294866	single	+	AG
chrY	11717746	A	n	TT	1.8639e-75	75	GSATII.Satellite.centr	57	-	-	-	-
chrY	11717803	T	n	GG	2.2398e-135	155	GSATII.Satellite.centr	13	-	-	-	-
chrY	11717816	A	n	TT	0	219	GSATII.Satellite.centr	13	-	-	-	-
chrY	11717876	G	n	AA	1.1935e-124	428	GSATII.Satellite.centr	49	-	-	-	-
chrY	11717925	G	n	CC	5.7603e-06	90	GSATII.Satellite.centr	49	rs72620612	single	+	CG
chrY	11717982	G	n	CC	3.9103e-106	80	GSATII.Satellite.centr	48	rs72620614	single	+	CG
chrY	11718030	A	n	CC	3.661e-291	234	GSATII.Satellite.centr	48	-	-	-	-
chrY	11718091	T	n	CC	0	474	GSATII.Satellite.centr	61	-	-	-	-
chrY	11718226	G	n	CC	2.0942e-57	138	GSATII.Satellite.centr	52	rs62597957	single	+	CG
chrY	11718278	C	n	TT	1.524e-221	482	GSATII.Satellite.centr	52	rs62599060	single	+	CG
chrY	11718503	G	n	AA	2.2744e-235	233	GSATII.Satellite.centr	45	rs62599062	single	+	AG
chrY	11718548	T	n	CC	1.9911e-252	139	GSATII.Satellite.centr	45	rs62599063	single	+	CT
chrY	11718860	C	n	TT	8.514e-260	426	TAR1.Satellite.telo	48	-	-	-	-
chrY	11718908	A	n	GG	3.8524e-51	239	TAR1.Satellite.telo	15	rs72620617	single	+	AG
chrY	11718923	C	n	GG	3.8267e-224	241	TAR1.Satellite.telo	15	rs72620618	single	+	CG
chrY	11719010	G	n	AA	3.027e-306	217	TAR1.Satellite.telo	18	rs62599073	single	+	AG
chrY	11719028	T	n	CC	0	361	TAR1.Satellite.telo	18	rs62599074	single	+	CT
chrY	11719067	T	n	CC	2.5016e-265	250	TAR1.Satellite.telo	14	rs62599075	single	+	CT
chrY	11719081	G	n	AA	0	329	TAR1.Satellite.telo	14	rs62599076	single	+	AG
chrY	11719131	A	n	CC	2.1676e-261	221	TAR1.Satellite.telo	50	rs62599077	single	+	AC
chrY	11719209	G	n	AA	8.3285e-123	113	TAR1.Satellite.telo	10	-	-	-	-
chrY	11719219	T	n	AA	2.4362e-83	89	TAR1.Satellite.telo	10	-	-	-	-
chrY	11719597	A	n	GG	2.69e-07	16	(TTAGGG)n.Simple_repeat.Simple_repeat	45	-	-	-	-
chrY	11719642	T	n	CC	3.7795e-26	20	-	45	-	-	-	-
chrY	11719716	A	n	GG	3.7901e-07	21	(TTAGGG)n.Simple_repeat.Simple_repeat	74	-	-	-	-
chrY	11719838	T	n	AA	1.7451e-07	71	-	12	-	-	-	-
chrY	11719850	T	n	CC	8.7429e-05	64	L1PB.LINE.L1	12	rs72620619	single	+	CT
chrY	11719926	C	n	TT	0.0033037	2	L1PB.LINE.L1	31	-	-	-	-
chrY	11719957	A	n	GG	0.00050281	3	L1PB.LINE.L1	31	rs62599078	single	+	AG
chrY	11720371	T	n	AA	6.5698e-05	11	L1PB.LINE.L1	146	-	-	-	-
chrY	11720517	G	n	AA	1.4965e-08	8	L1PB.LINE.L1	146	-	-	-	-
chrY	11721371	G	n	AA	0.0050938	2	L1PB.LINE.L1	854	rs62599083	single	+	AG
chrY	11722231	G	n	AA	0.0041663	3	L1PB.LINE.L1	80	rs2959687	single	+	AG
chrY	11722311	G	n	AA	6.766e-40	30	L1PB.LINE.L1	80	-	-	-	-
chrY	11722629	C	n	TT	1.3994e-19	21	-	48	-	-	-	-
chrY	11722677	G	n	AA	1.64e-43	113	-	14	-	-	-	-
chrY	11722691	A	n	GG	4.9972e-27	163	-	14	-	-	-	-
chrY	11722836	A	n	GG	2.3777e-83	268	-	71	rs62599088	single	+	AG
chrY	11722907	C	n	GG	8.0612e-87	301	-	71	rs73618420	single	+	CG
chrY	11723090	G	n	AA	9.4801e-177	263	-	183	rs62599089	single	+	AG
chrY	11723303	C	n	TT	2.0583e-154	138	-	60	-	-	-	-
chrY	11723363	A	n	GG	2.8288e-77	169	-	10	-	-	-	-
chrY	11723373	C	n	GG	0.21136	157	-	10	-	-	-	-
chrY	11723408	T	n	CC	1.3023e-308	292	-	30	rs72620624	single	+	CT
chrY	11723438	G	n	TT	4.7593e-52	100	-	30	rs72620625	single	+	GT
chrY	11723884	C	n	GG	0.0122	6	L1M3.LINE.L1	446	-	-	-	-
chrY	11725304	G	n	TT	0.010317	2	L1M3.LINE.L1	67	rs62599094	single	+	GT
chrY	11725371	T	n	AA	2.7489e-11	7	L1M3.LINE.L1	67	rs62599096	single	+	AT
chrY	11726041	C	n	TT	0.0033037	2	L1M3.LINE.L1	259	-	-	-	-
chrY	11726300	A	n	GG	1.7196e-06	12	-	198	rs62599102	single	+	AG
chrY	11726498	A	n	GG	9.8044e-202	129	-	57	rs4242830	single	-	CT
chrY	11726555	T	n	GG	3.8292e-63	59	-	4	-	-	-	-
chrY	11726559	C	n	TT	1.6153e-27	42	-	4	-	-	-	-
chrY	11726694	C	n	AA	1.4371e-25	44	-	1	-	-	-	-
chrY	11726695	A	n	CC	8.6491e-92	45	-	1	-	-	-	-
chrY	11726790	A	n	CC	1.0989e-11	16	AluJ/FLAM.SINE.Alu	95	rs62599103	single	+	AC
chrY	11726948	C	n	TT	0.00022294	16	L1M3.LINE.L1	158	-	-	-	-
chrY	11727281	T	n	CC	5.2389e-05	3	-	130	rs4881925	single	-	AG
chrY	11727411	A	n	GG	8.8246e-05	37	AluSg1.SINE.Alu	130	-	-	-	-
chrY	11727802	G	n	CC	3.3461e-23	55	AluSx.SINE.Alu	134	rs62599115	single	+	CG
chrY	11727936	A	n	TT	3.4711e-116	67	AluSx.SINE.Alu	124	-	-	-	-
chrY	11728060	A	n	CC	9.5394e-60	46	-	16	-	-	-	-
chrY	11728076	C	n	AA	1.1604e-16	19	-	16	-	-	-	-
chrY	11728360	T	n	CC	1.3285e-110	55	-	16	rs62599122	single	+	CT
chrY	11728376	A	n	GG	1.0106e-152	83	-	16	rs62599123	single	+	AG
chrY	11728617	G	n	AA	2.3346e-14	10	MER21C.LTR.ERV1	1	-	-	-	-
chrY	11728618	T	n	CC	7.3544e-15	10	MER21C.LTR.ERV1	1	-	-	-	-
chrY	11728643	T	n	CC	1.0106e-43	46	MER21C.LTR.ERV1	25	rs4317977	single	-	AG
chrY	11728722	G	n	AA	1.2623e-131	152	MER21C.LTR.ERV1	6	-	-	-	-
chrY	11728728	C	n	GG	9.8877e-171	153	MER21C.LTR.ERV1	6	-	-	-	-
chrY	11729164	A	n	GG	0.028509	8	AluJo.SINE.Alu	104	-	-	-	-
chrY	11729268	A	n	GG	3.1702e-50	50	AluJb.SINE.Alu	104	-	-	-	-
chrY	11729483	A	n	GG	3.1355e-108	157	AluJb.SINE.Alu	160	rs4400797	single	-	CT
chrY	11729643	T	n	CC	0.14344	16	MER21C.LTR.ERV1	160	-	-	-	-
chrY	11729989	T	n	CC	3.5452e-06	9	MER21C.LTR.ERV1	11	-	-	-	-
chrY	11730000	C	n	GG	1.2671e-11	14	MER21C.LTR.ERV1	11	rs4614787	single	+	CG
chrY	11730035	A	n	GG	2.7501e-45	47	MER21C.LTR.ERV1	35	rs4297450	single	-	CT
chrY	11730194	T	n	CC	7.089e-101	72	AluJo.SINE.Alu	6	rs62599129	single	+	CT
chrY	11730200	C	n	TT	1.3328e-50	65	AluJo.SINE.Alu	6	rs62599130	single	+	CT
chrY	11730501	A	n	GG	7.822e-83	70	FLAM_C.SINE.Alu	243	rs62599132	single	+	AG
chrY	11730744	A	n	GG	6.3388e-53	42	MLT1D.LTR.MaLR	243	rs62599137	single	+	AG
chrY	11730992	A	n	CC	9.7991e-49	38	AluJo.SINE.Alu	167	-	-	-	-
chrY	11731159	A	n	GG	0	202	AluJo.SINE.Alu	167	rs62599141	single	+	AG
chrY	11731682	A	n	GG	2.3547e-147	103	L2.LINE.L2	177	rs62599142	single	+	AG
chrY	11731859	A	n	TT	9.6168e-90	65	AluJo.SINE.Alu	25	rs4590860	single	-	AT
chrY	11731884	T	n	AA	1.2201e-51	43	AluJo.SINE.Alu	19	-	-	-	-
chrY	11731903	A	n	GG	7.7843e-34	49	AluJo.SINE.Alu	19	-	-	-	-
chrY	11731932	T	n	AA	3.9125e-57	54	AluJo.SINE.Alu	29	rs62599146	single	+	AT
chrY	11732045	A	n	GG	2.9435e-66	39	AluJo.SINE.Alu	19	-	-	-	-
chrY	11732064	A	n	GG	6.6646e-17	31	AluJo.SINE.Alu	2	-	-	-	-
chrY	11732066	A	n	CC	6.2977e-13	30	AluJo.SINE.Alu	2	-	-	-	-
chrY	11732146	T	n	AA	0.00012967	5	(TAAA)n.Simple_repeat.Simple_repeat	21	rs72620628	single	+	AT
chrY	11732167	A	n	GG	4.0915e-43	30	AluJo.SINE.Alu	21	-	-	-	-
chrY	11732211	T	n	CC	8.2863e-306	205	AluJo.SINE.Alu	44	-	-	-	-
chrY	11732704	T	n	CC	0.024121	2	-	170	rs62599147	single	+	CT
chrY	11732874	T	n	CC	3.9252e-14	135	AluSg.SINE.Alu	130	rs4242823	single	-	AG
chrY	11733004	G	n	AA	4.5292e-43	127	AluSg.SINE.Alu	60	-	-	-	-
chrY	11733064	A	n	CC	3.2669e-260	159	-	35	-	-	-	-
chrY	11733099	A	n	GG	0.0065918	16	-	35	rs4242859	single	-	CT
chrY	11733296	G	n	CC	3.0447e-49	47	-	197	-	-	-	-
chrY	11733544	C	n	TT	3.3573e-06	8	AluJo.SINE.Alu	34	-	-	-	-
chrY	11733578	T	n	CC	2.4945e-114	61	AluJo.SINE.Alu	34	-	-	-	-
chrY	11733629	T	n	CC	9.6047e-12	32	AluJo.SINE.Alu	34	-	-	-	-
chrY	11733663	A	n	CC	2.6047e-73	44	AluJo.SINE.Alu	34	-	-	-	-
chrY	11734338	T	n	GG	4.2418e-28	22	AluJo.SINE.Alu	163	rs62600663	single	+	GT
chrY	11734501	A	n	GG	1.0849e-74	72	L1MB8.LINE.L1	10	-	-	-	-
chrY	11734511	T	n	GG	2.9373e-83	72	L1MB8.LINE.L1	10	rs71272947	mnp	-	CATAGGGTATTATAGGGTAC
chrY	11735001	C	n	TT	5.0071e-54	32	FLAM_C.SINE.Alu	8	rs62600669	single	+	CT
chrY	11735009	A	n	CC	5.5152e-60	35	FLAM_C.SINE.Alu	8	rs62600670	single	+	AC
chrY	11736127	A	n	TT	4.0793e-14	6	(TTA)n.Simple_repeat.Simple_repeat	235	rs62600672	single	+	AT
chrY	11736362	T	n	CC	7.9793e-101	102	AluSx.SINE.Alu	213	-	-	-	-
chrY	11736575	T	n	GG	0.018823	4	-	187	-	-	-	-
chrY	11736762	G	n	TT	2.2857e-08	4	-	37	rs2959692	single	+	GT
chrY	11736799	T	n	CC	1.2219e-08	4	-	10	rs2959693	single	+	CT
chrY	11736809	G	n	AA	1.3256e-11	5	-	10	rs2959694	single	+	AG
chrY	11736897	G	n	AA	0.0053011	2	-	12	-	-	-	-
chrY	11736909	G	n	AA	0.0086553	2	-	12	rs2959695	single	+	AG
chrY	11737036	G	n	TT	6.4777e-23	39	-	127	rs2959696	single	+	GT
chrY	11737164	G	n	AA	4.4462e-98	57	-	128	rs62600678	single	+	AG
chrY	11737677	C	n	AA	0.0015736	3	L1MC4.LINE.L1	320	-	-	-	-
chrY	11737997	C	n	TT	4.0674e-171	169	AluSx.SINE.Alu	73	-	-	-	-
chrY	11738070	A	n	GG	8.587e-05	17	L1MC4.LINE.L1	73	-	-	-	-
chrY	11738601	G	n	AA	1.2103e-29	27	L1MC4.LINE.L1	531	rs62600687	single	+	AG
chrY	11739555	T	n	CC	0.0080987	2	Tigger5.DNA.MER2_type	382	rs9785347	single	-	AG
chrY	11739937	T	n	CC	6.4172e-187	136	AluSp.SINE.Alu	292	rs62600711	single	+	CT
chrY	11740229	T	n	GG	2.1904e-42	20	L1M5.LINE.L1	234	rs62600712	single	+	GT
chrY	11740463	C	n	AA	2.1014e-13	28	-	175	-	-	-	-
chrY	11740638	C	n	AA	2.8484e-11	9	-	14	-	-	-	-
chrY	11740652	A	n	TT	0.00030403	7	-	7	-	-	-	-
chrY	11740659	A	n	CC	0.11279	6	-	7	-	-	-	-
chrY	11740898	T	n	GG	5.0677e-14	14	-	239	-	-	-	-
chrY	11742619	A	n	CC	2.7099e-39	179	LTR1B.LTR.ERV1	857	-	-	-	-
chrY	11743476	T	n	CC	2.413e-51	40	LTR1B.LTR.ERV1	570	rs62600719	single	+	CT
chrY	11744046	T	n	GG	2.0348e-34	22	SATR1.Satellite.Satellite	123	rs62600722	single	+	GT
chrY	11744169	A	n	GG	0.016838	6	SATR1.Satellite.Satellite	123	-	-	-	-
chrY	11744683	G	n	AA	4.9448e-05	7	SATR1.Satellite.Satellite	452	rs71281118	mnp	+	CCAGGGGGGCAGGGGA
chrY	11745135	T	n	CC	1.4731e-10	8	SATR1.Satellite.Satellite	75	-	-	-	-
chrY	11745210	A	n	GG	0.0093985	11	SATR1.Satellite.Satellite	75	-	-	-	-
chrY	11745438	A	n	GG	0.0062334	7	SATR1.Satellite.Satellite	30	-	-	-	-
chrY	11745468	A	n	TT	0.042187	2	SATR1.Satellite.Satellite	30	-	-	-	-
chrY	11745819	C	n	TT	1.6074e-30	54	SATR1.Satellite.Satellite	351	rs4517846	single	+	CT
chrY	11746288	A	n	GG	3.1594e-12	10	SATR1.Satellite.Satellite	17	rs62600725	single	+	AG
chrY	11746305	C	n	AA	6.1233e-11	9	SATR1.Satellite.Satellite	17	-	-	-	-
chrY	11746400	A	n	CC	1.3808e-73	35	SATR1.Satellite.Satellite	2	-	-	-	-
chrY	11746402	T	n	CC	1.8708e-69	34	SATR1.Satellite.Satellite	2	-	-	-	-
chrY	11746453	A	n	CC	5.2136e-14	6	SATR1.Satellite.Satellite	51	-	-	-	-
chrY	11746506	A	n	GG	1.1985e-14	13	SATR1.Satellite.Satellite	53	-	-	-	-
chrY	11746679	T	n	GG	3.6943e-13	27	SATR1.Satellite.Satellite	173	rs71243617	single	-	AC
chrY	11747524	C	n	TT	8.421e-113	81	SATR1.Satellite.Satellite	8	rs62600729	single	+	CT
chrY	11747532	T	n	GG	2.9317e-135	90	SATR1.Satellite.Satellite	8	rs62600730	single	+	GT
chrY	11748443	C	n	GG	2.1881e-05	3	-	113	rs62600733	single	+	CG
chrY	11748556	G	n	AA	1.3121e-10	49	-	113	-	-	-	-
chrY	11748874	T	n	AA	1.6181e-05	24	-	66	rs62601776	single	+	AT
chrY	11748940	T	n	CC	1.0216e-105	47	-	66	rs34125551	single	-	AG
chrY	11749656	G	n	TT	2.5806e-05	15	-	117	-	-	-	-
chrY	11749773	A	n	GG	2.4467e-77	43	-	17	-	-	-	-
chrY	11749790	G	n	AA	2.5448e-13	9	-	17	-	-	-	-
chrY	11749903	C	n	TT	5.406e-50	38	-	113	-	-	-	-
chrY	11750227	T	n	CC	1.4617e-10	5	-	7	-	-	-	-
chrY	11750234	A	n	TT	4.0969e-10	5	-	7	-	-	-	-
chrY	11750419	A	n	CC	2.0087e-08	12	-	89	-	-	-	-
chrY	11750508	T	n	CC	1.199e-28	15	-	89	-	-	-	-
chrY	11750758	G	n	CC	2.4244e-189	143	AluY.SINE.Alu	250	-	-	-	-
chrY	11751076	T	n	CC	3.5871e-35	24	SATR1.Satellite.Satellite	59	-	-	-	-
chrY	11751135	T	n	CC	6.1648e-43	24	SATR1.Satellite.Satellite	28	-	-	-	-
chrY	11751163	T	n	CC	2.4076e-23	14	SATR1.Satellite.Satellite	28	-	-	-	-
chrY	11751237	C	n	TT	1.53e-23	22	SATR1.Satellite.Satellite	34	-	-	-	-
chrY	11751271	T	n	CC	5.7937e-100	63	SATR1.Satellite.Satellite	34	-	-	-	-
chrY	11751436	A	n	GG	2.3935e-61	40	SATR1.Satellite.Satellite	24	rs62601777	single	+	AG
chrY	11751460	G	n	AA	2.6339e-73	54	SATR1.Satellite.Satellite	24	rs62601778	single	+	AG
chrY	11751566	T	n	CC	2.2318e-17	11	SATR1.Satellite.Satellite	106	rs62601779	single	+	CT
chrY	11751909	T	n	CC	6.0461e-57	45	SATR1.Satellite.Satellite	343	-	-	-	-
chrY	11752264	G	n	CC	1.7452e-100	152	SATR1.Satellite.Satellite	75	-	-	-	-
chrY	11752339	G	n	TT	8.0002e-09	15	SATR1.Satellite.Satellite	75	rs35682466	single	-	CT
chrY	11752468	T	n	GG	6.0767e-158	73	SATR1.Satellite.Satellite	100	rs62601781	single	+	GT
chrY	11752568	A	n	GG	3.3209e-153	95	SATR1.Satellite.Satellite	87	rs2991146	single	+	AG
chrY	11752655	T	n	CC	2.7364e-205	90	SATR1.Satellite.Satellite	87	rs2991147	single	+	CT
chrY	11752846	C	n	TT	7.0009e-123	68	MLT2B3.LTR.ERVL	191	rs62601782	single	+	CT
chrY	11753470	A	n	GG	0	231	-	415	rs62601785	single	+	AG
chrY	11753885	A	n	TT	4.1177e-05	35	-	137	rs62601790	single	+	AT
chrY	11754022	C	n	AA	0.015759	2	AT_rich.Low_complexity.Low_complexity	137	-	-	-	-
chrY	11754289	T	n	CC	7.2805e-32	48	-	267	rs2959705	single	+	CT
chrY	11755158	C	n	TT	1.4482e-05	3	-	483	-	-	-	-
chrY	11755641	T	n	GG	2.5546e-149	244	AluSx.SINE.Alu	126	-	-	-	-
chrY	11755767	T	n	GG	0.022572	2	-	45	-	-	-	-
chrY	11755812	G	n	TT	1.7213e-05	3	-	45	rs62598260	single	+	GT
chrY	11755869	G	n	CC	3.8097e-05	8	-	57	rs62598261	single	+	CG
chrY	11756313	C	n	TT	1.533e-19	9	-	1	-	-	-	-
chrY	11756314	T	n	CC	4.3202e-20	9	-	1	-	-	-	-
chrY	11756446	A	n	CC	4.5705e-16	26	-	5	-	-	-	-
chrY	11756451	C	n	AA	9.8253e-37	36	-	5	-	-	-	-
chrY	11756670	G	n	AA	4.498e-09	6	-	30	-	-	-	-
chrY	11756700	A	n	TT	0.27645	3	-	14	-	-	-	-
chrY	11756714	A	n	GG	1.9655e-33	19	-	14	-	-	-	-
chrY	11757366	A	n	GG	3.1337e-19	10	-	15	rs2959707	single	+	AG
chrY	11757381	A	n	GG	1.6101e-14	8	-	15	rs2991145	single	-	CT
chrY	11757597	A	n	GG	1.1015e-19	22	-	103	rs2991144	single	-	CT
chrY	11757700	T	n	CC	4.4771e-181	78	-	46	rs4022079	single	-	AG
chrY	11757746	C	n	TT	5.8255e-31	12	-	3	rs2959708	single	+	CT
chrY	11757749	G	n	CC	4.3104e-20	12	-	3	-	-	-	-
chrY	11757888	G	n	CC	4.732e-89	46	-	25	-	-	-	-
chrY	11757913	A	n	CC	1.074e-112	76	-	25	-	-	-	-
chrY	11757968	T	n	CC	5.6506e-48	44	-	28	rs62598295	single	+	CT
chrY	11757996	A	n	CC	1.6912e-16	14	-	28	rs62598296	single	+	AC
chrY	11758061	T	n	CC	0	250	-	46	-	-	-	-
chrY	11758107	C	n	TT	6.6982e-06	24	-	46	rs62598297	single	+	CT
chrY	11758285	T	n	CC	1.1798e-05	13	-	137	-	-	-	-
chrY	11758422	A	n	CC	1.605e-66	37	Tigger4(Zombi).DNA.MER2_type	4	rs62598299	single	+	AC
chrY	11758426	G	n	AA	4.4109e-29	32	Tigger4(Zombi).DNA.MER2_type	4	-	-	-	-
chrY	11758443	T	n	CC	3.8795e-20	16	Tigger4(Zombi).DNA.MER2_type	17	rs62598300	single	+	CT
chrY	11758735	G	n	TT	4.2031e-08	8	Tigger4(Zombi).DNA.MER2_type	36	rs71235713	single	+	GT
chrY	11758771	C	n	GG	0.018112	2	Tigger4(Zombi).DNA.MER2_type	36	-	-	-	-
chrY	11758891	C	n	TT	0.0039489	2	Tigger4(Zombi).DNA.MER2_type	120	rs62598303	single	+	CT
chrY	11759091	T	n	CC	7.2599e-63	40	Tigger4(Zombi).DNA.MER2_type	193	rs2959709	single	+	CT
chrY	11759284	A	n	GG	2.7538e-53	34	Tigger4(Zombi).DNA.MER2_type	32	-	-	-	-
chrY	11759316	A	n	GG	2.2979e-66	40	Tigger4(Zombi).DNA.MER2_type	1	-	-	-	-
chrY	11759317	G	n	AA	2.1854e-56	40	Tigger4(Zombi).DNA.MER2_type	1	-	-	-	-
chrY	11759428	G	n	AA	2.5316e-10	5	Tigger4(Zombi).DNA.MER2_type	42	rs62598306	single	+	AG
chrY	11759470	G	n	AA	1.0186e-25	17	Tigger4(Zombi).DNA.MER2_type	21	rs2933676	single	+	AG
chrY	11759491	C	n	TT	2.1418e-05	15	Tigger4(Zombi).DNA.MER2_type	21	-	-	-	-
chrY	11759922	C	n	AA	0.16749	9	-	53	-	-	-	-
chrY	11759975	A	n	GG	0.01695	8	-	50	rs62598308	single	+	AG
chrY	11760025	T	n	CC	0.0050761	2	-	50	rs62598309	single	+	CT
chrY	11760688	G	n	CC	0.012894	2	L1MB7.LINE.L1	82	rs62598312	single	+	CG
chrY	11760770	T	n	GG	8.6979e-173	124	FRAM.SINE.Alu	44	rs62598313	single	+	GT
chrY	11760814	A	n	CC	1.0968e-21	50	FRAM.SINE.Alu	1	-	-	-	-
chrY	11760815	T	n	AA	1.3395e-17	49	FRAM.SINE.Alu	1	-	-	-	-
chrY	11760849	T	n	GG	2.2891e-159	112	FRAM.SINE.Alu	34	rs62598331	single	+	GT
chrY	11760951	T	n	CC	1.8403e-05	145	L1MB7.LINE.L1	102	-	-	-	-
chrY	11761690	C	n	TT	1.4085e-80	234	L1MC2.LINE.L1	9	rs71298016	mnp	-	AAACTGGGCGGAACTGGGCA
chrY	11761699	T	n	CC	1.5287e-45	150	L1MC2.LINE.L1	9	rs71298016	mnp	-	AAACTGGGCGGAACTGGGCA
chrY	11761736	T	n	CC	7.9017e-06	9	L1MC2.LINE.L1	37	rs71260583	single	-	AG
chrY	11761846	T	n	CC	8.927e-09	5	L1MC2.LINE.L1	110	rs2959727	single	+	CT
chrY	11762138	A	n	CC	2.213e-15	9	L1MC2.LINE.L1	132	rs2959728	single	+	AC
chrY	11762270	G	n	AA	3.8392e-20	12	L1M.LINE.L1	132	rs62598336	single	+	AG
chrY	11762443	G	n	CC	3.139e-11	5	L1M.LINE.L1	88	rs62598337	single	+	CG
chrY	11762531	A	n	GG	1.179e-08	7	L1M.LINE.L1	19	-	-	-	-
chrY	11762550	A	n	CC	6.0451e-05	7	L1M.LINE.L1	3	-	-	-	-
chrY	11762553	G	n	AA	1.8979e-11	7	L1M.LINE.L1	3	rs2959730	single	+	AG
chrY	11762918	C	n	GG	0.017673	2	L1M.LINE.L1	365	rs4264445	single	+	CG
chrY	11763348	T	n	GG	1.6634e-46	31	L1PA5.LINE.L1	351	rs62598345	single	+	GT
chrY	11763699	T	n	CC	7.7721e-07	4	-	45	rs62598346	single	+	CT
chrY	11763744	A	n	TT	0.079494	12	-	45	-	-	-	-
chrY	11763866	G	n	AA	0.007412	9	-	27	rs62598349	single	+	AG
chrY	11763893	T	n	GG	7.551e-12	94	-	27	-	-	-	-
chrY	11764065	T	n	CC	0.0060213	6	-	34	rs62598353	single	+	CT
chrY	11764099	T	n	CC	9.9204e-09	4	-	34	rs62598354	single	+	CT
chrY	11764678	T	n	AA	1.677e-141	163	FRAM.SINE.Alu	114	rs62598355	single	+	AT
chrY	11764792	C	n	AA	2.3497e-278	151	FRAM.SINE.Alu	114	rs62598356	single	+	AC
chrY	11764942	C	n	TT	2.8496e-67	73	MLT1B.LTR.MaLR	39	-	-	-	-
chrY	11764981	T	n	AA	1.2353e-237	153	MLT1B.LTR.MaLR	32	-	-	-	-
chrY	11765013	T	n	CC	7.9288e-39	68	MLT1B.LTR.MaLR	19	rs62598357	single	+	CT
chrY	11765032	C	n	AA	2.0516e-107	163	-	19	rs62598358	single	+	AC
chrY	11765059	C	n	GG	5.2398e-108	356	-	27	-	-	-	-
chrY	11765123	A	n	GG	5.4184e-80	100	-	39	rs4489733	single	-	AC
chrY	11765162	A	n	CC	3.2821e-16	121	-	39	-	-	-	-
chrY	11765230	T	n	CC	9.1314e-267	129	-	68	-	-	-	-
chrY	11765383	A	n	CC	4.2879e-125	109	-	10	-	-	-	-
chrY	11765393	A	n	CC	3.5125e-199	138	-	10	-	-	-	-
chrY	11765614	T	n	CC	6.4135e-284	191	-	39	rs72620639	single	+	CT
chrY	11765653	A	n	GG	1.3332e-244	150	-	31	-	-	-	-
chrY	11765684	G	n	AA	5.3333e-92	137	-	31	-	-	-	-
chrY	11765792	G	n	CC	9.5602e-167	113	-	5	rs62598359	single	+	CG
chrY	11765797	C	n	TT	2.4997e-36	98	-	5	-	-	-	-
chrY	11765848	A	n	GG	6.388e-74	98	-	29	-	-	-	-
chrY	11765877	T	n	CC	1.1566e-54	97	-	11	-	-	-	-
chrY	11765888	T	n	GG	7.5464e-78	100	-	11	-	-	-	-
chrY	11766138	T	n	CC	3.1066e-37	196	-	147	-	-	-	-
chrY	11766285	C	n	GG	1.2039e-188	249	-	6	-	-	-	-
chrY	11766291	C	n	TT	5.5074e-99	280	-	6	-	-	-	-
chrY	11766345	T	n	GG	9.1688e-178	121	-	40	rs4289048	single	+	GT
chrY	11766385	A	n	GG	9.8264e-245	149	-	33	rs4616337	single	+	AG
chrY	11766418	A	n	TT	3.4361e-316	272	-	33	rs62599661	single	+	AT
chrY	11766513	T	n	CC	7.8647e-147	106	-	95	rs62599662	single	+	CT
chrY	11766647	G	n	CC	0	332	-	134	rs62599680	single	+	CG
chrY	11766804	A	n	CC	2.047e-279	151	-	157	rs62599682	single	+	AC
chrY	11766979	A	n	CC	6.572e-242	166	-	2	-	-	-	-
chrY	11766981	G	n	TT	3.5203e-214	155	-	2	rs62599683	single	+	GT
chrY	11767006	T	n	CC	5.3833e-59	77	-	25	rs62599684	single	+	CT
chrY	11767058	C	n	GG	0	359	-	52	rs62599685	single	+	CG
chrY	11767184	T	n	GG	3.0199e-111	185	-	37	rs62599687	single	+	GT
chrY	11767221	T	n	GG	1.5449e-127	110	-	37	rs62599688	single	+	GT
chrY	11767317	C	n	AA	2.414e-116	160	-	30	rs2959738	single	+	AC
chrY	11767347	C	n	GG	7.9977e-142	518	-	30	-	-	-	-
chrY	11767424	G	n	TT	4.7456e-89	69	-	77	rs6605392	single	+	GT
chrY	11767561	G	n	AA	7.7751e-21	207	-	123	rs7660574	single	+	AG
chrY	11767684	A	n	CC	7.8064e-198	165	-	46	rs62599691	single	+	AC
chrY	11767730	T	n	CC	0.0043043	93	-	46	rs62599692	single	+	CT
chrY	11767821	A	n	GG	4.2524e-273	167	-	27	rs62599695	single	+	AG
chrY	11767848	A	n	GG	0	191	-	27	rs2959740	single	+	AG
chrY	11767915	C	n	TT	3.6282e-112	204	-	67	-	-	-	-
chrY	11768033	C	n	TT	3.7423e-95	91	-	118	rs2959741	single	+	CT
chrY	11768364	G	n	TT	8.2757e-28	267	-	84	-	-	-	-
chrY	11768448	T	n	CC	1.2711e-291	211	-	84	-	-	-	-
chrY	11768702	C	n	TT	1.8535e-28	85	-	76	rs62599697	single	+	CT
chrY	11768778	G	n	AA	8.5484e-42	204	-	34	-	-	-	-
chrY	11768812	T	n	CC	2.063e-163	153	-	34	rs62599698	single	+	CT
chrY	11768861	T	n	CC	4.0509e-165	134	-	49	-	-	-	-
chrY	11768968	T	n	CC	6.32404e-321	182	-	32	-	-	-	-
chrY	11769000	A	n	GG	0	247	-	32	-	-	-	-
chrY	11769069	T	n	CC	1.2221e-247	133	-	69	rs62599699	single	+	CT
chrY	11769173	A	n	TT	3.2362e-230	132	-	52	rs62599700	single	+	AT
chrY	11769225	A	n	CC	1.0177e-218	242	-	13	rs62599701	single	+	AC
chrY	11769238	G	n	CC	3.8443e-107	192	-	13	rs62599702	single	+	CG
chrY	11769261	T	n	CC	8.9504e-266	206	-	23	rs62599703	single	+	CT
chrY	11769347	C	n	TT	7.5347e-22	102	-	23	-	-	-	-
chrY	11769370	C	n	TT	2.6695e-101	77	-	23	rs62599704	single	+	CT
chrY	11769397	C	n	TT	5.1643e-69	124	-	27	-	-	-	-
chrY	11769454	A	n	GG	2.9045e-211	144	-	13	-	-	-	-
chrY	11769467	T	n	CC	3.5601e-39	64	-	13	-	-	-	-
chrY	11769601	G	n	TT	3.4005e-46	46	-	99	rs72620651	single	+	GT
chrY	11769700	A	n	GG	7.8621e-44	62	-	33	rs62599706	single	+	AG
chrY	11769733	A	n	CC	1.6545e-247	129	-	33	rs62599707	single	+	AC
chrY	11769803	C	n	TT	3.7065e-301	169	-	70	rs62599708	single	+	CT
chrY	11769886	T	n	CC	2.8917e-277	140	-	26	rs62599709	single	+	CT
chrY	11769912	T	n	GG	0	209	-	26	rs62599711	single	+	GT
chrY	11769977	G	n	AA	0	303	-	41	rs4023151	single	-	CT
chrY	11770018	C	n	TT	2.7726e-97	107	-	2	rs4023149	single	-	AG
chrY	11770020	G	n	AA	2.3839e-110	105	-	2	-	-	-	-
chrY	11770113	T	n	CC	1.3053e-139	69	-	9	-	-	-	-
chrY	11770122	A	n	GG	3.0422e-67	53	-	9	rs4023147	single	-	CT
chrY	11770144	T	n	CC	1.2656e-140	81	-	22	-	-	-	-
chrY	11770233	C	n	TT	3.3171e-287	397	-	59	rs4023145	single	-	AG
chrY	11770292	T	n	CC	8.0223e-55	82	-	59	rs62599736	single	+	CT
chrY	11770423	C	n	TT	5.6709e-80	126	-	20	rs62599738	single	+	CT
chrY	11770443	T	n	CC	1.9682e-68	104	-	5	rs62599739	single	+	CT
chrY	11770448	A	n	CC	3.3793e-112	103	-	5	rs62599740	single	+	AC
chrY	11770524	A	n	GG	1.6996e-11	115	-	42	-	-	-	-
chrY	11770566	T	n	CC	2.1711e-59	140	-	42	-	-	-	-
chrY	11770645	G	n	TT	9.3173e-200	139	-	37	-	-	-	-
chrY	11770682	T	n	CC	3.104e-236	143	-	37	-	-	-	-
chrY	11770720	C	n	AA	1.7452e-254	159	-	38	rs62599741	single	+	AC
chrY	11770773	C	n	TT	7.9063e-144	123	-	1	rs62599742	single	+	CT
chrY	11770774	A	n	GG	5.5945e-110	123	-	1	-	-	-	-
chrY	11770798	G	n	CC	1.855e-299	185	-	24	rs62599743	single	+	CG
chrY	11770838	C	n	TT	1.0429e-267	210	-	35	-	-	-	-
chrY	11770873	G	n	AA	5.5321e-161	152	-	11	-	-	-	-
chrY	11770884	T	n	CC	0	233	-	11	rs62599744	single	+	CT
chrY	11771037	T	n	CC	0	379	-	3	rs62599745	single	+	CT
chrY	11771040	C	n	GG	0	381	-	3	rs62599746	single	+	CG
chrY	11771143	G	n	AA	1.5943e-254	160	-	79	rs62599747	single	+	AG
chrY	11771222	T	n	AA	6.4191e-232	90	-	37	rs62599748	single	+	AT
chrY	11771259	A	n	GG	1.3408e-183	115	-	37	rs62599749	single	+	AG
chrY	11771304	A	n	GG	8.4345e-277	292	-	5	rs62599751	single	+	AG
chrY	11771309	T	n	CC	4.6298e-215	238	-	5	rs62599752	single	+	CT
chrY	11771332	T	n	GG	9.374e-204	175	-	23	rs62599753	single	+	GT
chrY	11771389	A	n	GG	1.6543e-304	303	-	15	-	-	-	-
chrY	11771404	T	n	GG	1.7647e-245	262	-	15	rs35005931	single	+	AG
chrY	11771476	T	n	CC	7.6859e-23	154	-	72	-	-	-	-
chrY	11771578	A	n	GG	4.581e-256	304	-	5	-	-	-	-
chrY	11771583	G	n	AA	2.0081e-237	270	-	5	-	-	-	-
chrY	11771676	T	n	CC	0	365	-	50	-	-	-	-
chrY	11771726	T	n	GG	0	309	-	50	-	-	-	-
chrY	11771800	T	n	CC	9.0556e-104	158	-	61	rs72620654	single	+	CT
chrY	11771861	A	n	GG	6.0196e-21	72	-	61	rs72620656	single	+	AG
chrY	11771959	G	n	CC	4.3899e-10	498	-	41	-	-	-	-
chrY	11772000	C	n	TT	4.4234e-116	349	-	19	-	-	-	-
chrY	11772019	A	n	CC	0	233	-	19	-	-	-	-
chrY	11772066	T	n	CC	1.2175e-297	182	-	37	-	-	-	-
chrY	11772103	T	n	CC	6.888e-277	252	-	2	-	-	-	-
chrY	11772105	T	n	CC	3.6275e-314	275	-	2	-	-	-	-
chrY	11772156	A	n	CC	2.499e-115	270	-	19	rs72620657	single	+	AC
chrY	11772175	A	n	GG	1.7349e-116	225	-	19	rs72620658	single	+	AG
chrY	11772274	C	n	TT	2.1904e-50	253	-	32	-	-	-	-
chrY	11772306	A	n	GG	7.8846e-151	141	-	32	-	-	-	-
chrY	11772346	A	n	GG	1.8562e-10	109	-	39	-	-	-	-
chrY	11772385	T	n	CC	1.0179e-188	262	-	27	-	-	-	-
chrY	11772412	G	n	AA	4.7022e-30	222	-	27	-	-	-	-
chrY	11772445	T	n	CC	1.2457e-128	122	-	33	-	-	-	-
chrY	11772500	C	n	GG	2.2356e-73	206	-	44	-	-	-	-
chrY	11772544	A	n	CC	4.3053e-46	315	-	34	-	-	-	-
chrY	11772578	G	n	AA	7.1533e-94	324	-	4	-	-	-	-
chrY	11772582	A	n	CC	1.4017e-270	365	-	4	-	-	-	-
chrY	11772650	C	n	TT	8.6443e-69	114	-	1	-	-	-	-
chrY	11772651	C	n	TT	0.002626	117	-	1	-	-	-	-
chrY	11772665	G	n	CC	2.0155e-233	211	-	14	-	-	-	-
chrY	11772728	C	n	TT	1.5469e-68	471	-	27	-	-	-	-
chrY	11772755	A	n	GG	1.4534e-195	141	-	27	-	-	-	-
chrY	11772788	A	n	GG	2.6934e-196	162	-	33	-	-	-	-
chrY	11772828	G	n	TT	1.8486e-168	272	-	5	-	-	-	-
chrY	11772833	C	n	TT	5.9472e-241	256	-	5	rs62599756	single	+	CT
chrY	11772986	T	n	CC	2.0471e-65	36	-	13	rs62599757	single	+	CT
chrY	11772999	G	n	TT	3.8454e-45	44	-	13	-	-	-	-
chrY	11773141	T	n	CC	2.3105e-211	228	-	32	-	-	-	-
chrY	11773173	A	n	GG	3.8337e-217	218	-	3	-	-	-	-
chrY	11773176	T	n	CC	7.3829e-242	222	-	3	-	-	-	-
chrY	11773241	A	n	CC	8.7003e-47	20	-	65	-	-	-	-
chrY	11773324	T	n	GG	1.2567e-60	129	-	83	-	-	-	-
chrY	11773427	A	n	GG	2.7464e-62	78	-	13	rs62599759	single	+	AG
chrY	11773440	T	n	AA	1.077e-14	80	-	13	rs62600960	single	+	AT
chrY	11773459	A	n	GG	1.0137e-151	129	-	19	rs62600961	single	+	AG
chrY	11773541	G	n	AA	4.4156e-47	110	GA-rich.Low_complexity.Low_complexity	82	-	-	-	-
chrY	11773739	A	n	CC	4.4452e-89	51	-	18	rs62600962	single	+	AC
chrY	11773757	T	n	CC	8.4242e-87	54	-	18	rs62600963	single	+	CT
chrY	11773782	T	n	AA	6.9205e-34	69	-	25	-	-	-	-
chrY	11773817	T	n	CC	5.6537e-118	90	-	23	rs62600964	single	+	CT
chrY	11773840	A	n	GG	8.5925e-120	113	-	23	rs62600965	single	+	AG
chrY	11773934	C	n	TT	4.0118e-255	199	-	7	-	-	-	-
chrY	11773941	A	n	GG	4.4889e-233	156	-	7	rs62600967	single	+	AG
chrY	11773956	A	n	CC	1.183e-214	141	-	15	rs62600981	single	+	AC
chrY	11774033	A	n	CC	1.4818e-172	112	-	36	-	-	-	-
chrY	11774069	A	n	CC	7.9221e-48	68	-	9	-	-	-	-
chrY	11774078	G	n	AA	9.88e-22	83	-	9	-	-	-	-
chrY	11774088	G	n	TT	1.9572e-69	102	-	10	-	-	-	-
chrY	11774125	T	n	CC	1.7256e-103	97	-	10	-	-	-	-
chrY	11774135	C	n	GG	9.9439e-24	82	-	10	-	-	-	-
chrY	11774158	A	n	GG	2.8997e-298	211	-	23	-	-	-	-
chrY	11774235	G	n	AA	1.8166e-32	250	-	35	-	-	-	-
chrY	11774270	T	n	CC	1.6014e-318	271	-	35	-	-	-	-
chrY	11774326	G	n	AA	8.7508e-72	340	-	1	-	-	-	-
chrY	11774327	T	n	CC	0	333	-	1	-	-	-	-
chrY	11774447	T	n	GG	1.524e-117	104	-	61	-	-	-	-
chrY	11774508	T	n	CC	2.055e-46	147	-	2	-	-	-	-
chrY	11774510	T	n	CC	2.4428e-17	175	-	2	-	-	-	-
chrY	11774591	A	n	TT	9.4122e-138	164	-	50	-	-	-	-
chrY	11774641	A	n	GG	1.7952e-24	64	-	50	-	-	-	-
chrY	11774737	A	n	GG	1.5005e-288	249	-	96	-	-	-	-
chrY	11774852	T	n	CC	1.4285e-162	149	-	115	rs62600985	single	+	CT
chrY	11775082	A	n	GG	2.1536e-72	334	-	42	rs7376878	single	+	AG
chrY	11775124	T	n	CC	1.1833e-193	127	-	42	rs2991153	single	-	AG
chrY	11775263	A	n	GG	1.4366e-105	84	-	132	rs62600986	single	+	AG
chrY	11775395	A	n	GG	1.4337e-28	86	-	20	rs62600987	single	+	AG
chrY	11775415	T	n	CC	3.6308e-120	89	-	20	rs62600988	single	+	CT
chrY	11775489	T	n	CC	3.232e-07	105	-	25	-	-	-	-
chrY	11775514	T	n	CC	8.1737e-77	184	-	25	-	-	-	-
chrY	11775539	T	n	CC	3.7158e-71	84	-	5	-	-	-	-
chrY	11775544	T	n	CC	1.4667e-96	76	-	5	-	-	-	-
chrY	11775618	A	n	CC	1.9416e-192	177	-	6	rs72620665	single	+	AC
chrY	11775624	C	n	TT	9.5273e-138	166	-	6	-	-	-	-
chrY	11775674	G	n	AA	1.1926e-56	446	-	37	-	-	-	-
chrY	11775711	G	n	AA	3.5311e-95	164	-	3	-	-	-	-
chrY	11775714	A	n	GG	3.0569e-157	159	-	3	rs72620666	single	+	AG
chrY	11775752	G	n	CC	3.0255e-65	123	-	2	-	-	-	-
chrY	11775754	A	n	CC	4.2034e-64	125	-	2	-	-	-	-
chrY	11775877	A	n	CC	0	376	-	120	-	-	-	-
chrY	11775997	A	n	GG	3.5421e-104	104	-	15	-	-	-	-
chrY	11776012	G	n	CC	1.2736e-40	108	-	15	-	-	-	-
chrY	11776251	T	n	AA	4.4283e-246	181	-	213	-	-	-	-
chrY	11776464	G	n	CC	4.5421e-146	99	-	43	-	-	-	-
chrY	11776507	T	n	CC	1.5209e-300	231	-	1	rs62600990	single	+	CT
chrY	11776508	G	n	CC	1.7075e-296	219	-	1	rs2959744	single	+	CG
chrY	11776598	A	n	GG	5.6858e-250	220	-	90	rs2959745	single	+	AG
chrY	11776749	A	n	CC	0	253	-	151	rs2933706	single	+	AC
chrY	11776927	A	n	GG	1.2477e-264	155	-	4	rs2933707	single	+	AG
chrY	11776931	A	n	TT	0.058109	148	-	4	rs399776	single	+	AT
chrY	11777134	C	n	AA	2.2678e-76	280	-	41	-	-	-	-
chrY	11777175	A	n	CC	2.013e-283	199	-	24	rs62600996	single	+	AC
chrY	11777199	C	n	GG	4.7182e-290	220	-	7	rs62600997	single	+	CG
chrY	11777206	A	n	GG	1.3236e-295	188	-	7	rs62600998	single	+	AG
chrY	11777313	A	n	GG	1.7231e-63	28	L1MD.LINE.L1	107	rs62601001	single	+	AG
chrY	11777480	T	n	CC	0.0066817	6	-	167	-	-	-	-
chrY	11777741	C	n	TT	0.0027835	2	-	39	rs2933710	single	+	CT
chrY	11777780	T	n	CC	8.5308e-06	7	-	39	rs62601004	single	+	CT
chrY	11777917	G	n	AA	0.004755	2	-	5	rs2991170	single	+	AG
chrY	11777922	T	n	CC	0.0083728	2	-	5	-	-	-	-
chrY	11777939	A	n	GG	7.0305e-10	5	-	17	rs62601006	single	+	AG
chrY	11778088	G	n	AA	1.5873e-08	4	-	97	rs62601007	single	+	AG
chrY	11778185	C	n	TT	4.3012e-05	3	-	97	rs2933712	single	+	CT
chrY	11778347	C	n	TT	0.0094355	6	-	162	rs62598865	single	+	CT
chrY	11778827	G	n	AA	3.0316e-20	22	-	15	-	-	-	-
chrY	11778842	G	n	TT	2.2801e-15	17	-	15	rs2959750	single	+	GT
chrY	11779161	T	n	CC	0	222	AluSq.SINE.Alu	69	rs62598873	single	+	CT
chrY	11779230	C	n	TT	3.9557e-134	118	AluSq.SINE.Alu	69	rs414843	single	+	CT
chrY	11779595	C	n	AA	3.0854e-08	4	MLT1B.LTR.MaLR	365	rs2933716	single	+	AC
chrY	11780193	C	n	TT	0.0040831	2	-	45	rs71222341	single	+	CT
chrY	11780238	T	n	GG	2.6827e-05	4	-	2	rs28540929	single	+	GT
chrY	11780240	A	n	GG	9.5667e-06	4	-	2	rs71222342	mnp	+	GCGTCA
chrY	11780506	G	n	CC	0.015563	12	-	26	-	-	-	-
chrY	11780532	A	n	GG	2.312e-17	9	-	26	rs2991174	single	+	AG
chrY	11780994	T	n	GG	4.9386e-08	5	-	163	rs393878	single	-	AC
chrY	11781157	G	n	AA	3.2089e-35	23	-	163	rs2959752	single	+	AG
chrY	11781661	T	n	AA	5.3282e-42	19	-	59	rs62598886	single	+	AT
chrY	11781720	C	n	GG	0.018719	2	-	1	rs62598888	single	+	CG
chrY	11781721	A	n	GG	0.0073961	2	-	1	rs62598889	single	+	AG
chrY	11781762	T	n	CC	2.3626e-05	3	-	23	-	-	-	-
chrY	11781785	G	n	CC	0.02013	2	-	23	rs62598890	single	+	CG
chrY	11781811	A	n	TT	3.5373e-08	8	-	26	-	-	-	-
chrY	11782243	C	n	GG	1.9565e-40	28	L1MA2.LINE.L1	432	rs62598893	single	+	CG
chrY	11782823	T	n	GG	4.2373e-147	57	L1MA2.LINE.L1	103	rs62598921	single	+	GT
chrY	11782926	G	n	AA	1.3112e-17	16	-	6	rs454503	single	+	AG
chrY	11782932	A	n	GG	3.2082e-27	15	-	6	rs71284757	mnp	+	AGCAGCGGGCAGCA
chrY	11783118	T	n	CC	1.0762e-57	113	-	94	-	-	-	-
chrY	11783212	T	n	CC	7.1201e-42	79	AluY.SINE.Alu	14	rs72607909	single	+	CT
chrY	11783226	T	n	CC	3.7621e-19	64	AluY.SINE.Alu	14	rs72607910	single	+	CT
chrY	11783310	C	n	AA	8.4466e-37	77	AluY.SINE.Alu	7	-	-	-	-
chrY	11783317	T	n	CC	2.3132e-60	54	AluY.SINE.Alu	7	-	-	-	-
chrY	11783392	C	n	GG	0	274	AluY.SINE.Alu	75	-	-	-	-
chrY	11783492	A	n	CC	1.3592e-28	28	AluY.SINE.Alu	29	-	-	-	-
chrY	11783521	C	n	AA	0.00023225	31	-	29	-	-	-	-
chrY	11783593	A	n	TT	0.00084996	13	-	72	rs62598922	single	+	AT
chrY	11783879	G	n	AA	6.5339e-109	217	-	4	rs401757	single	+	AG
chrY	11783883	T	n	CC	0	237	-	4	rs62598924	single	+	CT
chrY	11784014	G	n	AA	1.7163e-285	150	-	131	rs62598926	single	+	AG
chrY	11784167	C	n	TT	2.1219e-178	174	-	55	rs62598928	single	+	CT
chrY	11784222	G	n	AA	1.8514e-48	286	-	1	-	-	-	-
chrY	11784223	T	n	CC	0	292	-	1	rs62598929	single	+	CT
chrY	11784265	A	n	GG	3.6252e-224	281	-	42	rs62598931	single	+	AG
chrY	11784366	C	n	TT	1.4026e-200	408	-	34	-	-	-	-
chrY	11784400	T	n	CC	1.5152e-25	176	-	8	-	-	-	-
chrY	11784408	T	n	CC	1.8363e-82	239	-	8	-	-	-	-
chrY	11784471	C	n	TT	2.1631e-54	192	-	6	-	-	-	-
chrY	11784477	T	n	CC	2.809e-114	132	-	6	-	-	-	-
chrY	11784511	T	n	GG	1.683e-129	148	-	1	-	-	-	-
chrY	11784512	T	n	CC	1.4484e-154	162	-	1	-	-	-	-
chrY	11784570	T	n	CC	1.0166e-119	87	-	58	-	-	-	-
chrY	11784698	A	n	CC	2.2018e-144	228	-	2	rs72607911	single	+	AC
chrY	11784700	C	n	TT	1.1382e-101	211	-	2	-	-	-	-
chrY	11784713	C	n	TT	6.3756e-14	156	-	13	rs72607912	single	+	CT
chrY	11784836	T	n	CC	4.5621e-291	281	-	79	-	-	-	-
chrY	11784915	T	n	CC	3.2393e-262	256	-	58	rs62598935	single	+	CT
chrY	11784973	A	n	TT	4.0119e-51	153	-	27	rs62598937	single	+	AT
chrY	11785000	A	n	CC	3.6265e-56	99	-	11	rs62598939	single	+	AC
chrY	11785011	G	n	AA	9.105e-77	75	-	11	rs62598941	single	+	AG
chrY	11785074	T	n	AA	7.3106e-14	8	-	63	rs2639868	single	+	AT
chrY	11785242	G	n	CC	0.057768	10	-	150	rs62598942	single	+	CG
chrY	11785392	A	n	GG	7.5512e-17	16	-	56	-	-	-	-
chrY	11785448	C	n	TT	6.1565e-41	26	-	47	rs62598946	single	+	CT
chrY	11785495	C	n	TT	4.4117e-48	34	-	47	-	-	-	-
chrY	11785604	T	n	GG	1.4187e-64	42	-	70	-	-	-	-
chrY	11785674	A	n	TT	0.073819	10	(TG)n.Simple_repeat.Simple_repeat	70	rs62598947	single	+	AT
chrY	11785845	C	n	TT	5.2128e-137	120	AluSx.SINE.Alu	113	rs2959756	single	+	CT
chrY	11785958	A	n	GG	0.00055741	67	AluSx.SINE.Alu	102	rs384051	single	-	CT
chrY	11786060	A	n	CC	1.6021e-18	23	AluSx.SINE.Alu	102	-	-	-	-
chrY	11786219	T	n	CC	7.6086e-164	101	AluSp.SINE.Alu	10	-	-	-	-
chrY	11786229	A	n	CC	2.5106e-187	104	AluSp.SINE.Alu	10	-	-	-	-
chrY	11786278	T	n	CC	1.4991e-115	95	AluSp.SINE.Alu	49	-	-	-	-
chrY	11786374	C	n	TT	3.6721e-35	43	AluSp.SINE.Alu	30	rs72607916	single	+	CT
chrY	11786404	T	n	CC	6.6946e-51	46	AluSp.SINE.Alu	30	-	-	-	-
chrY	11786504	A	n	GG	5.077e-05	5	MLT1H-int.LTR.MaLR	99	-	-	-	-
chrY	11786603	A	n	GG	0.0048064	8	MLT1H-int.LTR.MaLR	99	rs4881959	single	-	CT
chrY	11786779	C	n	GG	4.4055e-09	6	L1ME2.LINE.L1	176	rs62598950	single	+	CG
chrY	11787012	T	n	GG	0.024324	2	L1ME2.LINE.L1	233	-	-	-	-
chrY	11787306	G	n	TT	4.8036e-08	10	L1ME2.LINE.L1	156	rs62598953	single	+	GT
chrY	11787462	G	n	AA	9.5042e-23	19	-	6	-	-	-	-
chrY	11787468	A	n	GG	1.2766e-17	26	-	4	rs62598954	single	+	AG
chrY	11787472	T	n	GG	1.8514e-25	29	-	4	rs62598955	single	+	GT
chrY	11787602	T	n	GG	6.3132e-221	237	-	71	rs62600270	single	+	GT
chrY	11787673	T	n	CC	4.491e-91	114	-	52	-	-	-	-
chrY	11787725	A	n	GG	1.128e-316	206	-	28	-	-	-	-
chrY	11787753	T	n	GG	1.2454e-208	160	-	28	-	-	-	-
chrY	11787828	A	n	GG	1.5369e-268	197	-	45	-	-	-	-
chrY	11787873	T	n	GG	1.4078e-224	326	-	45	rs72607918	single	+	GT
chrY	11788108	T	n	CC	0	345	-	54	-	-	-	-
chrY	11788162	A	n	GG	2.4954e-164	149	-	23	rs62600271	single	+	AG
chrY	11788185	A	n	CC	7.9585e-20	64	-	23	-	-	-	-
chrY	11788236	C	n	TT	1.5197e-50	358	-	5	-	-	-	-
chrY	11788241	G	n	AA	1.0211e-237	370	-	5	-	-	-	-
chrY	11788278	T	n	CC	0	181	-	37	-	-	-	-
chrY	11788421	C	n	TT	1.072e-34	275	-	27	-	-	-	-
chrY	11788448	T	n	CC	6.982e-281	178	-	27	-	-	-	-
chrY	11788485	T	n	CC	0	373	-	37	-	-	-	-
chrY	11788530	T	n	CC	0	473	-	45	-	-	-	-
chrY	11788665	A	n	GG	3.6663e-248	172	-	29	-	-	-	-
chrY	11788694	G	n	CC	4.3932e-210	209	-	29	-	-	-	-
chrY	11788820	T	n	CC	2.1955e-200	476	-	80	-	-	-	-
chrY	11788900	G	n	AA	8.4075e-145	267	-	80	rs72607923	single	+	AG
chrY	11789024	A	n	GG	2.4968e-197	256	-	82	-	-	-	-
chrY	11789106	T	n	GG	3.5645e-103	421	(TTGGGG)n.Simple_repeat.Simple_repeat	62	-	-	-	-
chrY	11789168	G	n	CC	9.0101e-89	221	(TTGGGG)n.Simple_repeat.Simple_repeat	5	-	-	-	-
chrY	11789173	G	n	TT	0.1252	176	(TTGGGG)n.Simple_repeat.Simple_repeat	1	-	-	-	-
chrY	11789174	G	n	AA	3.3446e-89	163	(TTGGGG)n.Simple_repeat.Simple_repeat	1	-	-	-	-
chrY	11789211	T	n	CC	0	344	-	37	rs62600272	single	+	CT
chrY	11789264	A	n	GG	8.6905e-88	156	-	53	rs72607926	single	+	AG
chrY	11789360	T	n	CC	9.1831e-93	83	-	96	-	-	-	-
chrY	11789468	G	n	AA	8.6437e-194	300	-	93	rs72607928	single	+	AG
chrY	11789561	T	n	CC	4.1205e-256	197	-	13	-	-	-	-
chrY	11789574	C	n	GG	7.4546e-129	166	-	13	rs72607929	single	+	CG
chrY	11790104	T	n	CC	1.7404e-97	66	AluSx.SINE.Alu	95	rs72607931	single	+	CT
chrY	11790199	A	n	GG	6.7793e-79	58	AluSx.SINE.Alu	95	-	-	-	-
chrY	11790503	A	n	GG	4.6447e-43	16	-	304	rs62600274	single	+	AG
chrY	11790915	G	n	AA	0.30493	3	-	412	-	-	-	-
chrY	11791500	C	n	TT	1.9269e-08	10	-	388	rs62600281	single	+	CT
chrY	11791888	A	n	GG	1.7978e-140	103	-	13	rs4247532	single	+	AG
chrY	11791901	A	n	GG	0.00027208	158	-	13	rs2992631	single	+	AG
chrY	11791978	A	n	GG	4.7629e-254	144	-	37	rs4986715	single	-	CT
chrY	11792015	A	n	CC	2.2041e-115	70	-	37	rs4986714	single	-	GT
chrY	11792308	A	n	GG	2.395e-123	98	-	102	-	-	-	-
chrY	11792410	T	n	GG	8.6858e-17	56	-	24	-	-	-	-
chrY	11792434	C	n	AA	1.292e-33	68	-	24	-	-	-	-
chrY	11792461	C	n	GG	2.1641e-295	188	-	1	-	-	-	-
chrY	11792462	T	n	GG	1.2644e-89	194	-	1	-	-	-	-
chrY	11792500	T	n	CC	9.7002e-45	68	-	34	-	-	-	-
chrY	11792534	A	n	GG	6.5456e-52	94	-	34	-	-	-	-
chrY	11792595	A	n	GG	3.6996e-17	76	-	61	rs72607935	single	+	AG
chrY	11792734	A	n	GG	0	196	-	1	rs62600288	single	+	AG
chrY	11792735	A	n	GG	0	204	-	1	rs62600289	single	+	AG
chrY	11792856	T	n	AA	4.3918e-49	68	-	121	rs62600290	single	+	AT
chrY	11793529	C	n	TT	9.2158e-114	366	-	143	-	-	-	-
chrY	11793672	A	n	GG	9.1489e-136	91	-	39	-	-	-	-
chrY	11793711	A	n	GG	1.773e-141	123	-	39	-	-	-	-
chrY	11794054	C	n	AA	1.343e-106	79	-	343	-	-	-	-
chrY	11794432	T	n	CC	2.0952e-57	92	-	207	rs62596933	single	+	CT
chrY	11794639	T	n	CC	1.4912e-73	27	-	207	rs62596934	single	+	CT
chrY	11795316	A	n	CC	2.8305e-31	16	MSTA.LTR.MaLR	6	rs4023799	single	-	AG
chrY	11795322	A	n	GG	7.0864e-26	14	MSTA.LTR.MaLR	6	-	-	-	-
chrY	11795601	G	n	AA	0.0032092	4	MSTA-int.LTR.MaLR	279	rs3884497	single	-	CT
chrY	11796191	T	n	CC	1.2449e-05	3	MSTA.LTR.MaLR	1	rs7377472	single	-	AG
chrY	11796192	C	n	GG	6.0086e-05	3	MSTA.LTR.MaLR	1	rs790222	single	+	CG
chrY	11797981	A	n	GG	0.0070856	4	CER.Satellite.Satellite	1365	rs4115201	single	+	AG
chrY	11799346	T	n	CC	6.0391e-24	26	CER.Satellite.Satellite	5	rs9986067	single	-	CT
chrY	11799351	A	n	TT	3.8522e-24	23	CER.Satellite.Satellite	5	rs9986067	single	-	CT
chrY	11799552	A	n	GG	1.6582e-154	103	CER.Satellite.Satellite	201	rs9986067	single	-	CT
chrY	11800147	A	n	TT	7.8025e-45	62	CER.Satellite.Satellite	16	rs9986067	single	-	CT
chrY	11800163	T	n	AA	0.0017721	34	CER.Satellite.Satellite	16	rs9986067	single	-	CT
chrY	11800935	C	n	TT	2.445e-13	8	CER.Satellite.Satellite	194	rs4326785	single	-	AG
chrY	11801129	T	n	CC	3.4786e-48	24	CER.Satellite.Satellite	46	rs9970319	single	+	CG
chrY	11801175	C	n	AA	3.38e-40	24	CER.Satellite.Satellite	1	rs9970319	single	+	CG
chrY	11801176	A	n	CC	2.4746e-37	24	CER.Satellite.Satellite	1	rs9970319	single	+	CG
chrY	11801179	A	n	CC	7.0531e-51	24	CER.Satellite.Satellite	3	rs9970319	single	+	CG
chrY	11801766	T	n	CC	1.6035e-24	30	CER.Satellite.Satellite	587	-	-	-	-
chrY	11803303	C	n	AA	0.00853	6	L1MCa.LINE.L1	1537	rs62612397	single	+	AC
chrY	11805508	A	n	GG	8.5139e-06	9	Tigger1.DNA.MER2_type	9	-	-	-	-
chrY	11805517	T	n	CC	1.7028e-12	8	Tigger1.DNA.MER2_type	9	-	-	-	-
chrY	11806640	C	n	TT	5.2627e-80	51	Tigger1.DNA.MER2_type	130	rs71224018	single	+	CT
chrY	11806770	A	n	CC	1.4337e-10	29	AluJb.SINE.Alu	130	-	-	-	-
chrY	11807804	T	n	CC	2.1851e-32	91	AluSq.SINE.Alu	4	-	-	-	-
chrY	11807808	C	n	AA	6.9821e-30	80	AluSq.SINE.Alu	4	-	-	-	-
chrY	11808046	A	n	GG	1.0736e-23	30	AluY.SINE.Alu	238	-	-	-	-
chrY	11808434	G	n	CC	4.5111e-27	12	AluSx.SINE.Alu	388	-	-	-	-
chrY	11808964	A	n	TT	1.923e-27	19	AluSx.SINE.Alu	530	-	-	-	-
chrY	11809746	T	n	GG	0.4825	4	L1MB4.LINE.L1	782	rs2141686	single	+	AG
chrY	11810834	G	n	AA	1.6549e-13	10	L1MB4.LINE.L1	213	rs62612440	single	+	AG
chrY	11811047	T	n	GG	1.0667e-35	71	AluSx.SINE.Alu	7	rs3887467	single	-	CT
chrY	11811054	T	n	CC	0.34177	64	AluSx.SINE.Alu	7	rs4464132	single	+	CT
chrY	11812306	A	n	GG	1.2301e-22	12	-	1221	rs4127984	single	+	AG
chrY	11813527	T	n	CC	3.1518e-08	6	L1MB4.LINE.L1	574	rs4300708	single	+	CT
chrY	11814101	G	n	AA	3.9461e-09	4	L1MB4.LINE.L1	5	rs9308563	single	+	GT
chrY	11814106	T	n	CC	6.2521e-09	4	L1MB4.LINE.L1	5	rs6847234	single	-	AG
chrY	11814144	C	n	TT	0.013774	2	-	38	rs6830438	single	-	AG
chrY	11814715	T	n	CC	4.8991e-17	11	AluJb.SINE.Alu	13	rs4986751	single	-	AG
chrY	11814728	T	n	CC	0.00018181	16	AluJb.SINE.Alu	13	rs4986750	single	-	AG
chrY	11814762	A	n	CC	1.0623e-12	50	AluJb.SINE.Alu	34	-	-	-	-
chrY	11815187	A	n	GG	8.4447e-06	3	L1MEc.LINE.L1	93	-	-	-	-
chrY	11815280	T	n	CC	2.6718e-36	15	L1MEc.LINE.L1	93	-	-	-	-
chrY	11815870	A	n	GG	5.4612e-138	96	-	47	-	-	-	-
chrY	11815917	G	n	CC	8.173e-184	125	-	47	-	-	-	-
chrY	11816655	C	n	TT	0.0036671	2	A-rich.Low_complexity.Low_complexity	159	-	-	-	-
chrY	11816814	A	n	GG	0	296	-	159	rs62612455	single	+	AG
chrY	11817112	T	n	GG	2.1177e-42	61	-	281	-	-	-	-
chrY	11817393	T	n	CC	1.7027e-19	24	MLT1H1.LTR.MaLR	281	-	-	-	-
chrY	11817711	T	n	CC	3.2604e-60	67	MLT1H1.LTR.MaLR	9	-	-	-	-
chrY	11817720	C	n	TT	1.9394e-42	58	MLT1H1.LTR.MaLR	9	-	-	-	-
chrY	11818786	T	n	CC	3.9028e-25	28	AluSp.SINE.Alu	851	-	-	-	-
chrY	11819637	T	n	CC	7.0096e-123	59	MER57B.LTR.ERV1	350	-	-	-	-
chrY	11819987	A	n	GG	9.1062e-74	80	MER52A.LTR.ERV1	41	rs4919791	single	+	AG
chrY	11820028	A	n	GG	5.9456e-277	171	MER52A.LTR.ERV1	41	rs72607938	single	+	AG
chrY	11821127	C	n	GG	8.9458e-46	29	MER52A.LTR.ERV1	1099	-	-	-	-
chrY	11822272	T	n	CC	6.0017e-273	203	AluSp.SINE.Alu	902	rs1914423	single	+	CT
chrY	11823174	C	n	TT	7.2881e-08	116	AluY.SINE.Alu	372	rs6682893	single	-	AG
chrY	11823546	A	n	GG	1.0796e-140	60	AluSq.SINE.Alu	1	-	-	-	-
chrY	11823547	T	n	GG	1.7316e-127	57	AluSq.SINE.Alu	1	-	-	-	-
chrY	11825462	A	n	CC	0.013445	8	MER57B-int.LTR.ERV1	584	-	-	-	-
chrY	11826046	A	n	GG	7.2129e-05	36	AluY.SINE.Alu	568	-	-	-	-
chrY	11826614	C	n	TT	0.24197	64	MER57B.LTR.ERV1	71	-	-	-	-
chrY	11826685	T	n	CC	0.02418	16	MER57B.LTR.ERV1	71	-	-	-	-
chrY	11830302	G	n	CC	6.499e-26	113	-	16	-	-	-	-
chrY	11830318	T	n	GG	1.3751e-55	55	-	16	-	-	-	-
chrY	11830873	G	n	AA	1.9641e-09	136	-	153	rs62613396	single	+	AG
chrY	11831026	C	n	TT	1.5745e-08	23	AluSg.SINE.Alu	153	-	-	-	-
chrY	11831440	T	n	GG	0.47465	9	-	131	-	-	-	-
chrY	11831571	C	n	TT	0.0046884	2	-	131	rs72607940	single	+	CT
chrY	11833981	A	n	CC	2.723e-251	235	L1PB.LINE.L1	2012	-	-	-	-
chrY	11835993	A	n	GG	1.0665e-05	5	L1MA3.LINE.L1	2012	rs62613400	single	+	AG
chrY	11838863	A	n	GG	7.2212e-17	11	LTR49-int.LTR.ERV1	32	-	-	-	-
chrY	11838895	C	n	TT	3.3516e-26	13	LTR49-int.LTR.ERV1	32	-	-	-	-
chrY	11838946	G	n	AA	8.7721e-06	5	LTR49-int.LTR.ERV1	51	-	-	-	-
chrY	11840269	T	n	CC	8.2122e-11	15	L1PA7.LINE.L1	882	rs71258248	single	+	CT
chrY	11841151	C	n	TT	0.029397	2	L1PA7.LINE.L1	882	rs2991116	single	-	AG
chrY	11842390	T	n	CC	4.9997e-26	14	L1PA7.LINE.L1	48	-	-	-	-
chrY	11842438	A	n	CC	8.4253e-13	20	L1PA7.LINE.L1	48	rs2944963	single	+	AC
chrY	11843094	T	n	GG	0.00037736	8	L1PA7.LINE.L1	16	-	-	-	-
chrY	11843110	A	n	CC	2.9274e-07	8	L1PA7.LINE.L1	16	-	-	-	-
chrY	11843848	A	n	GG	0.022467	2	L1PA7.LINE.L1	443	rs2933725	single	+	AG
chrY	11844291	A	n	GG	6.961e-10	26	L1PA7.LINE.L1	443	-	-	-	-
chrY	11845366	A	n	GG	1.3341e-60	182	AluJb.SINE.Alu	1000	-	-	-	-
chrY	11846366	T	n	CC	7.7358e-22	44	AluJb.SINE.Alu	394	-	-	-	-
chrY	11846760	C	n	GG	0.032609	2	LOR1-int.LTR.ERV1	394	rs72607943	single	+	CG
chrY	11848061	T	n	CC	1.0231e-09	33	AluJb.SINE.Alu	238	-	-	-	-
chrY	11848299	T	n	GG	0.16439	19	AluJb.SINE.Alu	238	-	-	-	-
chrY	11849798	T	n	CC	6.2663e-35	44	AluSx.SINE.Alu	307	-	-	-	-
chrY	11850105	G	n	AA	0.037755	8	-	307	rs2890166	single	-	CT
chrY	11851153	G	n	AA	8.5444e-64	60	AluY.SINE.Alu	803	-	-	-	-
chrY	11851956	A	n	CC	5.057e-16	15	HERVK9.LTR.ERVK	16	rs4024794	single	-	GT
chrY	11851972	T	n	CC	1.5431e-15	15	HERVK9.LTR.ERVK	16	rs4024793	single	-	AG
chrY	11852946	T	n	CC	2.2732e-05	6	HERVK9.LTR.ERVK	18	-	-	-	-
chrY	11852964	A	n	CC	9.1646e-97	45	HERVK9.LTR.ERVK	18	-	-	-	-
chrY	11853099	A	n	CC	5.6545e-72	56	HERVK9.LTR.ERVK	42	rs3110574	single	+	AC
chrY	11853141	G	n	AA	5.9441e-66	88	HERVK9.LTR.ERVK	42	rs2959684	single	+	AG
chrY	11854852	C	n	GG	0.0077458	13	MER9.LTR.ERVK	330	-	-	-	-
chrY	11855182	A	n	GG	2.4358e-113	95	MER9.LTR.ERVK	2	rs4603147	single	-	CT
chrY	11855184	G	n	TT	1.0192e-31	95	MER9.LTR.ERVK	2	rs9633388	single	-	CT
chrY	11855380	A	n	GG	1.7628e-297	143	HERVK14.LTR.ERVK	196	rs62610498	single	+	AG
chrY	11859370	C	n	AA	0.18688	14	-	2200	rs10128048	single	+	AC
chrY	11861570	A	n	CC	6.8733e-28	18	LTR16A.LTR.ERVL	65	rs4513152	single	+	AC
chrY	11861635	C	n	TT	0.0019378	51	LTR16A.LTR.ERVL	19	-	-	-	-
chrY	11861654	G	n	CC	8.4981e-36	24	-	19	rs4414543	single	+	CG
chrY	11861704	C	n	AA	3.9319e-115	80	-	50	rs62610508	single	+	AC
chrY	11862258	A	n	GG	3.2633e-31	14	-	554	rs9782902	single	+	AG
chrY	11863696	A	n	GG	4.1427e-16	17	-	1016	rs2890161	single	-	CT
chrY	11864712	A	n	CC	3.4966e-28	38	-	815	rs11587779	single	+	AC
chrY	11865527	T	n	CC	0.0050761	2	L1MB1.LINE.L1	815	-	-	-	-
chrY	11867109	C	n	GG	1.0511e-19	10	L1MEb.LINE.L1	128	rs62610544	single	+	CG
chrY	11867237	A	n	GG	9.6536e-94	95	AluY.SINE.Alu	128	-	-	-	-
chrY	11867409	G	n	CC	2.4705e-07	56	AluY.SINE.Alu	172	rs62610546	single	+	CG
chrY	11867696	C	n	TT	0.003195	2	L1MEb.LINE.L1	287	rs7417121	single	+	CT
chrY	11868788	A	n	GG	0.0047552	2	L1MEb.LINE.L1	15	rs62612179	single	+	AG
chrY	11868803	C	n	GG	0.011528	2	L1MEb.LINE.L1	15	rs7417709	single	+	CG
chrY	11869056	A	n	GG	3.1558e-96	41	-	13	rs62612181	single	+	AG
chrY	11869069	G	n	AA	1.908e-99	39	-	13	rs62612182	single	+	AG
chrY	11869393	T	n	CC	1.8361e-14	8	-	4	-	-	-	-
chrY	11869397	C	n	TT	1.1745e-14	8	-	4	-	-	-	-
chrY	11869489	C	n	TT	0.015958	4	-	24	-	-	-	-
chrY	11869513	T	n	CC	0.0093055	4	-	7	-	-	-	-
chrY	11869520	A	n	CC	0.02152	4	-	7	-	-	-	-
chrY	11869632	C	n	AA	1.0114e-07	6	-	112	-	-	-	-
chrY	11870344	T	n	CC	1.167e-05	5	-	681	-	-	-	-
chrY	11871025	C	n	TT	0.011074	4	-	4	-	-	-	-
chrY	11871029	T	n	CC	0.068433	4	-	4	rs68040686	single	+	CT
chrY	11871151	T	n	AA	0.025181	6	-	6	-	-	-	-
chrY	11871157	A	n	GG	0.006001	6	-	6	-	-	-	-
chrY	11871515	A	n	GG	1.4839e-11	5	L1PA4.LINE.L1	15	-	-	-	-
chrY	11871530	A	n	GG	3.7977e-06	9	L1PA4.LINE.L1	15	-	-	-	-
chrY	11871636	G	n	AA	0.0086534	8	-	106	rs71225361	single	-	CT
chrY	11872381	T	n	GG	5.348e-08	6	-	557	rs62612191	single	+	GT
chrY	11872938	C	n	AA	4.965e-20	10	-	3	rs9919300	single	+	AC
chrY	11872941	C	n	GG	1.1749e-19	10	-	3	rs9919239	single	+	CG
chrY	11873257	A	n	GG	2.5104e-24	13	-	207	rs62612199	single	+	AG
chrY	11873464	T	n	AA	0.010361	13	-	207	-	-	-	-
chrY	11876271	T	n	CC	1.6913e-08	7	-	18	-	-	-	-
chrY	11876289	A	n	CC	5.9173e-16	19	-	18	rs2360576	single	-	GT
chrY	11876462	A	n	GG	0.0069505	2	-	173	-	-	-	-
chrY	11877038	A	n	TT	0.02204	2	-	576	-	-	-	-
chrY	11877733	C	n	TT	0.015733	5	MIR.SINE.MIR	695	-	-	-	-
chrY	11878529	A	n	GG	6.1523e-07	6	-	693	rs4024906	single	-	CG/T
chrY	11879222	T	n	AA	0.033519	6	-	3	rs9432724	single	+	AT
chrY	11879225	A	n	CC	3.0821e-05	5	-	3	rs4024917	single	-	GT
chrY	11879557	A	n	GG	0.018382	6	-	205	rs2360560	single	-	CT
chrY	11879762	A	n	GG	6.0614e-06	10	-	1	-	-	-	-
chrY	11879763	G	n	AA	0.00027711	10	-	1	-	-	-	-
chrY	11879932	A	n	GG	1.3612e-05	3	-	169	rs62612239	single	+	AG
chrY	11880375	A	n	GG	0.01442	2	MER20B.DNA.MER1_type	443	rs7555980	single	+	AG
chrY	11882418	A	n	TT	0.022365	2	-	92	rs9432749	single	+	AT
chrY	11882510	C	n	GG	5.5352e-08	7	(TG)n.Simple_repeat.Simple_repeat	3	-	-	-	-
chrY	11882513	A	n	TT	0.014738	6	(TG)n.Simple_repeat.Simple_repeat	3	-	-	-	-
chrY	11883010	T	n	AA	1.5092e-07	6	-	371	rs4024964	single	-	AT
chrY	11883381	C	n	AA	0.00083744	5	-	178	-	-	-	-
chrY	11883559	C	n	TT	0.0031087	2	-	44	rs62612248	single	+	CT
chrY	11883603	G	n	TT	3.1254e-14	6	-	19	rs13328663	single	+	GT
chrY	11883622	A	n	TT	0.026042	6	-	19	-	-	-	-
chrY	11883947	A	n	GG	5.1196e-05	9	L1PA4.LINE.L1	325	-	-	-	-
chrY	11884608	A	n	CC	1.1868e-46	39	L1PA4.LINE.L1	7	-	-	-	-
chrY	11884615	A	n	TT	6.5966e-25	39	L1PA4.LINE.L1	7	-	-	-	-
chrY	11884665	G	n	CC	2.43e-22	11	L1PA4.LINE.L1	3	-	-	-	-
chrY	11884668	G	n	CC	2.0122e-25	10	L1PA4.LINE.L1	3	rs62612256	single	+	CG
chrY	11889092	C	n	GG	1.0473e-98	104	L1PA4.LINE.L1	664	rs9970636	single	+	GT
chrY	11889756	G	n	CC	0.042396	10	L1PA4.LINE.L1	370	-	-	-	-
chrY	11890126	A	n	CC	0.019028	4	-	370	-	-	-	-
chrY	11891017	A	n	GG	6.9673e-94	72	-	10	-	-	-	-
chrY	11891027	A	n	TT	1.7284e-59	50	-	10	-	-	-	-
chrY	11892660	T	n	GG	1.3489e-30	15	-	405	rs62613504	single	+	GT
chrY	11893065	T	n	CC	0.0098725	2	-	284	rs9629844	single	-	AG
chrY	11893349	C	n	GG	4.0019e-56	207	AluSx.SINE.Alu	139	rs6690372	single	-	CT
chrY	11893488	A	n	TT	0.00049952	11	-	139	rs62613509	single	+	AT
chrY	11895286	C	n	TT	0.0027835	2	-	142	-	-	-	-
chrY	11895428	T	n	CC	0.0033914	6	-	142	rs6541529	single	+	CG/T
chrY	11895716	G	n	AA	0.0039391	2	-	288	-	-	-	-
chrY	11896190	T	n	GG	1.1621e-44	55	MIRb.SINE.MIR	474	-	-	-	-
chrY	11896804	T	n	AA	3.2955e-08	4	-	271	-	-	-	-
chrY	11897075	G	n	AA	0.36137	5	MER21C.LTR.ERV1	127	rs11582105	single	+	AG
chrY	11897202	G	n	TT	2.875e-19	58	MER21C.LTR.ERV1	37	rs62613533	single	+	GT
chrY	11897239	A	n	GG	3.6572e-43	47	MER21C.LTR.ERV1	37	rs11122669	single	+	CG
chrY	11897588	T	n	CC	9.278e-44	35	MER21B.LTR.ERV1	349	rs10458479	single	+	CT
chrY	11902564	C	n	TT	0.0082743	2	-	1	-	-	-	-
chrY	11902565	A	n	GG	0.0085829	2	-	1	-	-	-	-
chrY	11903033	A	n	GG	5.1027e-05	3	-	450	rs62610878	single	+	AG
chrY	11903483	A	n	GG	0.14955	11	LTR48.LTR.ERV1	115	-	-	-	-
chrY	11903598	A	n	TT	1.7368e-08	21	LTR48.LTR.ERV1	7	-	-	-	-
chrY	11903605	T	n	CC	3.3138e-09	20	LTR48.LTR.ERV1	7	-	-	-	-
chrY	11903862	A	n	GG	7.8138e-12	13	-	257	rs71202329	single	-	CT
chrY	11904154	A	n	TT	0.021008	2	-	292	rs62610879	single	+	AT
chrY	11904644	C	n	TT	2.0484e-17	13	-	74	-	-	-	-
chrY	11904718	C	n	TT	0.0067021	2	-	74	-	-	-	-
chrY	11905631	T	n	GG	0.053966	2	-	3	-	-	-	-
chrY	11905634	G	n	AA	0.0036298	2	-	3	-	-	-	-
chrY	11905804	T	n	GG	1.5553e-25	14	-	170	-	-	-	-
chrY	11906504	G	n	AA	3.4171e-18	19	L1P1.LINE.L1	396	rs62610911	single	+	AG
chrY	11906900	T	n	CC	3.4421e-05	21	(CATTC)n.Satellite.Satellite	396	-	-	-	-
chrY	11907409	G	n	AA	5.2683e-16	206	AluJ/FRAM.SINE.Alu	68	-	-	-	-
chrY	11907477	A	n	CC	2.2528e-44	30	(CATTC)n.Satellite.Satellite	68	rs36138967	single	-	AC
chrY	11907629	G	n	AA	2.5689e-14	86	(CATTC)n.Satellite.Satellite	152	-	-	-	-
chrY	11907878	A	n	TT	4.2481e-20	42	(CATTC)n.Simple_repeat.Simple_repeat	197	-	-	-	-
chrY	11908075	T	n	AA	1.3107e-31	67	(CACTC)n.Simple_repeat.Simple_repeat	197	-	-	-	-
chrY	11908404	G	n	AA	2.001e-61	84	Alu.SINE.Alu	159	-	-	-	-
chrY	11908563	A	n	CC	1.187e-36	22	-	159	-	-	-	-
chrY	11908942	G	n	CC	7.1722e-24	78	-	5	-	-	-	-
chrY	11908947	A	n	CC	2.6515e-108	64	-	5	-	-	-	-
chrY	11909241	G	n	TT	0	755	AluJ/FRAM.SINE.Alu	72	-	-	-	-
chrY	11909313	G	n	CC	3.9259e-165	91	(CATTC)n.Simple_repeat.Simple_repeat	72	rs62610923	single	+	CG
chrY	11909428	A	n	GG	2.2091e-110	68	AluJ/FRAM.SINE.Alu	63	-	-	-	-
chrY	11909491	G	n	TT	0	218	-	22	rs62610924	single	+	GT
chrY	11909513	C	n	TT	1.319e-253	137	(CACTC)n.Simple_repeat.Simple_repeat	22	rs62610925	single	+	CT
chrY	11909550	C	n	TT	5.0628e-174	676	(CACTC)n.Simple_repeat.Simple_repeat	37	-	-	-	-
chrY	11909589	T	n	CC	9.5326e-69	298	(CACTC)n.Simple_repeat.Simple_repeat	15	-	-	-	-
chrY	11909604	A	n	CC	1.6722e-168	116	(CACTC)n.Simple_repeat.Simple_repeat	15	-	-	-	-
chrY	11909629	A	n	GG	1.4034e-65	43	AluS.SINE.Alu	12	-	-	-	-
chrY	11909641	T	n	AA	2.0329e-178	162	AluS.SINE.Alu	12	-	-	-	-
chrY	11909814	T	n	CC	4.7159e-05	20	-	41	-	-	-	-
chrY	11909855	A	n	CC	1.37e-19	24	-	41	rs62610929	single	+	AC
chrY	11910027	C	n	AA	2.3288e-43	269	(CATTC)n.Satellite.Satellite	172	-	-	-	-
chrY	11910262	A	n	TT	1.9741e-257	191	-	235	rs62610930	single	+	AT
chrY	11910589	G	n	AA	8.9799e-39	107	(CATTC)n.Satellite.Satellite	52	-	-	-	-
chrY	11910641	T	n	CC	8.1073e-21	26	Alu.SINE.Alu	5	-	-	-	-
chrY	11910646	A	n	GG	4.8066e-15	26	Alu.SINE.Alu	5	-	-	-	-
chrY	11910676	T	n	CC	8.3781e-56	32	Alu.SINE.Alu	16	-	-	-	-
chrY	11910692	A	n	GG	2.3457e-35	24	Alu.SINE.Alu	16	-	-	-	-
chrY	11910745	T	n	CC	1.5914e-56	25	(CATTC)n.Satellite.Satellite	53	-	-	-	-
chrY	11910811	A	n	GG	0.045946	33	(CATTC)n.Satellite.Satellite	5	-	-	-	-
chrY	11910816	G	n	AA	1.3391e-10	32	(CATTC)n.Satellite.Satellite	5	-	-	-	-
chrY	11910935	T	n	CC	2.3622e-61	63	(CATTC)n.Satellite.Satellite	22	-	-	-	-
chrY	11910957	A	n	CC	1.9295e-190	91	(CATTC)n.Satellite.Satellite	22	-	-	-	-
chrY	11910997	T	n	CC	4.3519e-44	103	(CATTC)n.Satellite.Satellite	7	-	-	-	-
chrY	11911004	T	n	CC	2.0886e-63	77	(CATTC)n.Satellite.Satellite	7	-	-	-	-
chrY	11911100	A	n	GG	2.3262e-35	24	Alu.SINE.Alu	11	-	-	-	-
chrY	11911111	T	n	GG	8.5159e-33	34	Alu.SINE.Alu	11	-	-	-	-
chrY	11911238	T	n	CC	0	412	(CACTC)n.Simple_repeat.Simple_repeat	6	rs62610939	single	+	CT
chrY	11911244	A	n	TT	0	440	(CACTC)n.Simple_repeat.Simple_repeat	6	rs62610940	single	+	AT
chrY	11911307	A	n	GG	0	620	(CACTC)n.Simple_repeat.Simple_repeat	11	rs62611564	single	+	AG
chrY	11911318	A	n	CC	0	348	-	11	rs62611565	single	+	AC
chrY	11911345	A	n	GG	1.5163e-233	241	Alu.SINE.Alu	27	-	-	-	-
chrY	11911488	T	n	CC	1.1236e-48	57	(CATTC)n.Simple_repeat.Simple_repeat	1	rs62611566	single	+	CT
chrY	11911489	G	n	AA	4.1602e-56	58	(CATTC)n.Simple_repeat.Simple_repeat	1	rs62611567	single	+	AG
chrY	11911513	T	n	CC	1.9198e-208	155	(CATTC)n.Simple_repeat.Simple_repeat	24	-	-	-	-
chrY	11911678	T	n	GG	3.3723e-64	81	(CACTC)n.Simple_repeat.Simple_repeat	165	-	-	-	-
chrY	11912633	A	n	TT	0.0017815	45	(CACTC)n.Simple_repeat.Simple_repeat	572	-	-	-	-
chrY	11913205	C	n	TT	2.6807e-47	119	(CATTC)n.Satellite.Satellite	208	rs62642044	single	+	CT
chrY	11913413	T	n	CC	0.011068	21	(CATTC)n.Satellite.Satellite	4	-	-	-	-
chrY	11913417	T	n	CC	1.82e-49	46	(CATTC)n.Satellite.Satellite	4	-	-	-	-
chrY	11913443	A	n	CC	2.862e-40	1257	(CATTC)n.Satellite.Satellite	10	-	-	-	-
chrY	11913453	T	n	CC	2.0482e-107	1296	(CATTC)n.Satellite.Satellite	10	-	-	-	-
chrY	11913498	C	n	GG	8.1772e-11	762	(CATTC)n.Satellite.Satellite	45	-	-	-	-
chrY	11913613	T	n	GG	9.6888e-295	827	-	1	rs36162016	single	+	CT
chrY	11913614	T	n	GG	6.0007e-199	955	-	1	rs36162016	single	+	CT
chrY	11913766	A	n	CC	9.9529e-11	24	(CATTC)n.Satellite.Satellite	152	-	-	-	-
chrY	11914009	A	n	TT	1.0576e-49	38	-	243	-	-	-	-
chrY	11915363	T	n	CC	5.4556e-46	127	(CATTC)n.Satellite.Satellite	1	-	-	-	-
chrY	11915364	T	n	AA	5.081e-73	149	(CATTC)n.Satellite.Satellite	1	-	-	-	-
chrY	11915785	G	n	TT	1.466e-49	73	(CATTC)n.Satellite.Satellite	421	rs62636715	single	+	GT
chrY	11916341	C	n	TT	2.6073e-285	239	(CATTC)n.Satellite.Satellite	174	-	-	-	-
chrY	11916515	C	n	GG	3.0745e-167	115	(CATTC)n.Satellite.Satellite	174	-	-	-	-
chrY	11917096	C	n	GG	0.0072666	24	(CATTC)n.Satellite.Satellite	50	-	-	-	-
chrY	11917146	A	n	CC	2.6613e-28	194	(CATTC)n.Satellite.Satellite	50	-	-	-	-
chrY	11917967	C	n	TT	2.8814e-08	299	(CATTC)n.Satellite.Satellite	227	-	-	-	-
chrY	11918194	G	n	CC	1.9223e-152	240	-	21	-	-	-	-
chrY	11918215	A	n	CC	3.4036e-52	42	(CATTC)n.Satellite.Satellite	11	-	-	-	-
chrY	11918226	T	n	AA	8.5151e-29	48	(CATTC)n.Satellite.Satellite	11	-	-	-	-
chrY	11918314	G	n	CC	6.286e-09	10	(CATTC)n.Satellite.Satellite	88	-	-	-	-
chrY	11918439	T	n	CC	1.7622e-25	3636	(CATTC)n.Satellite.Satellite	125	-	-	-	-
chrY	11918569	A	n	CC	1.1866e-18	61	(CATTC)n.Satellite.Satellite	7	-	-	-	-
chrY	11918576	C	n	AA	1.0906e-20	63	(CATTC)n.Satellite.Satellite	7	-	-	-	-
chrY	11918776	T	n	GG	2.0414e-114	173	(CATTC)n.Satellite.Satellite	2	-	-	-	-
chrY	11918778	T	n	AA	8.1592e-258	185	(CATTC)n.Satellite.Satellite	2	-	-	-	-
chrY	11918812	A	n	GG	2.1393e-109	88	(CATTC)n.Satellite.Satellite	9	-	-	-	-
chrY	11918821	T	n	AA	1.8004e-192	141	(CATTC)n.Satellite.Satellite	9	-	-	-	-
chrY	11919013	C	n	TT	7.1153e-08	48	(CATTC)n.Satellite.Satellite	91	-	-	-	-
chrY	11919104	C	n	GG	8.0968e-73	292	-	91	rs62636719	single	+	CG
chrY	11919366	T	n	GG	5.6595e-13	28	(CATTC)n.Satellite.Satellite	93	-	-	-	-
chrY	11919459	G	n	CC	5.6876e-05	34	(CATTC)n.Satellite.Satellite	10	-	-	-	-
chrY	11919469	T	n	CC	9.5488e-20	40	(CATTC)n.Satellite.Satellite	10	-	-	-	-
chrY	11919710	G	n	AA	5.7468e-09	73	(CATTC)n.Satellite.Satellite	169	-	-	-	-
chrY	11919879	T	n	GG	1.3129e-07	12	BSR/Beta.Satellite.Satellite	3	-	-	-	-
chrY	11919882	T	n	CC	0.00054035	11	BSR/Beta.Satellite.Satellite	3	-	-	-	-
chrY	11920220	C	n	GG	1.0668e-76	63	BSR/Beta.Satellite.Satellite	61	-	-	-	-
chrY	11920281	A	n	GG	4.5303e-57	43	BSR/Beta.Satellite.Satellite	7	-	-	-	-
chrY	11920288	T	n	GG	6.4826e-89	47	BSR/Beta.Satellite.Satellite	7	rs62611601	single	+	GT
chrY	11920337	T	n	CC	5.9337e-24	45	BSR/Beta.Satellite.Satellite	49	-	-	-	-
chrY	11920407	A	n	CC	1.5312e-12	33	BSR/Beta.Satellite.Satellite	53	-	-	-	-
chrY	11920460	T	n	CC	1.2601e-116	461	BSR/Beta.Satellite.Satellite	53	-	-	-	-
chrY	11920625	T	n	CC	1.3477e-27	51	BSR/Beta.Satellite.Satellite	2	rs62611610	single	+	CT
chrY	11920627	C	n	GG	3.5208e-36	46	BSR/Beta.Satellite.Satellite	2	-	-	-	-
chrY	11920804	T	n	AA	4.8859e-194	530	BSR/Beta.Satellite.Satellite	46	-	-	-	-
chrY	11920850	T	n	GG	5.0301e-09	27	BSR/Beta.Satellite.Satellite	22	-	-	-	-
chrY	11920872	G	n	CC	4.8887e-49	24	BSR/Beta.Satellite.Satellite	3	-	-	-	-
chrY	11920875	A	n	GG	8.262e-31	23	BSR/Beta.Satellite.Satellite	3	-	-	-	-
chrY	11920915	T	n	AA	1.1822e-90	40	BSR/Beta.Satellite.Satellite	5	-	-	-	-
chrY	11920920	T	n	CC	3.1751e-86	38	BSR/Beta.Satellite.Satellite	3	-	-	-	-
chrY	11920923	A	n	TT	4.479e-71	35	BSR/Beta.Satellite.Satellite	3	rs34208917	single	+	GT
chrY	11921129	A	n	GG	4.1352e-158	96	BSR/Beta.Satellite.Satellite	5	rs62611614	single	+	AG
chrY	11921134	T	n	CC	3.6778e-75	53	BSR/Beta.Satellite.Satellite	5	rs62611615	single	+	CT
chrY	11921185	C	n	TT	2.7875e-124	229	BSR/Beta.Satellite.Satellite	20	-	-	-	-
chrY	11921205	G	n	AA	0	965	BSR/Beta.Satellite.Satellite	7	rs62611617	single	+	AG
chrY	11921212	A	n	GG	9.1003e-236	1204	BSR/Beta.Satellite.Satellite	7	-	-	-	-
chrY	11921265	A	n	TT	6.8424e-138	723	BSR/Beta.Satellite.Satellite	3	-	-	-	-
chrY	11921268	A	n	GG	0	604	BSR/Beta.Satellite.Satellite	2	-	-	-	-
chrY	11921270	G	n	TT	6.0831e-307	496	BSR/Beta.Satellite.Satellite	2	-	-	-	-
chrY	11921328	C	n	AA	4.1017e-22	44	BSR/Beta.Satellite.Satellite	4	rs71301626	in-del	-	-AT
chrY	11921332	C	n	TT	1.3283e-42	36	BSR/Beta.Satellite.Satellite	4	-	-	-	-
chrY	11921363	T	n	AA	1.2881e-87	76	BSR/Beta.Satellite.Satellite	31	-	-	-	-
chrY	11921568	T	n	CC	1.1513e-24	116	BSR/Beta.Satellite.Satellite	49	-	-	-	-
chrY	11921617	T	n	AA	1.6039e-16	19	BSR/Beta.Satellite.Satellite	49	rs62611620	single	+	AT
chrY	11921798	C	n	AA	6.6973e-68	62	-	62	rs62611625	single	+	AC
chrY	11921860	T	n	AA	4.0783e-51	344	-	14	-	-	-	-
chrY	11921874	C	n	TT	0	452	-	14	rs71234517	mnp	-	GAAGGCATTAAGGCAC
chrY	11921928	G	n	CC	1.0065e-226	1306	-	21	-	-	-	-
chrY	11921949	T	n	AA	2.7058e-287	328	-	21	-	-	-	-
chrY	11921994	T	n	GG	2.9761e-101	88	-	10	rs62611628	single	+	GT
chrY	11922004	T	n	GG	4.1372e-87	146	-	10	-	-	-	-
chrY	11922056	A	n	GG	4.5811e-314	650	-	30	-	-	-	-
chrY	11922086	T	n	GG	1.6505e-315	185	-	30	-	-	-	-
chrY	11922116	A	n	CC	5.6483e-263	237	-	30	rs36140148	single	+	CT
chrY	11922154	A	n	GG	5.6569e-312	875	-	26	-	-	-	-
chrY	11922180	A	n	GG	8.8622e-191	358	-	6	-	-	-	-
chrY	11922186	A	n	GG	0	380	-	6	-	-	-	-
chrY	11922226	T	n	AA	7.2227e-247	554	-	24	-	-	-	-
chrY	11922250	T	n	AA	6.2649e-102	124	-	24	-	-	-	-
chrY	11922412	G	n	CC	1.8278e-176	148	-	112	-	-	-	-
chrY	11922524	T	n	AA	2.6875e-185	184	LSAU.Satellite.Satellite	112	-	-	-	-
chrY	11922675	G	n	CC	1.3669e-114	289	-	26	-	-	-	-
chrY	11922701	A	n	TT	1.1647e-34	184	-	26	-	-	-	-
chrY	11922740	A	n	GG	1.2942e-30	340	-	39	-	-	-	-
chrY	11923182	T	n	CC	1.6098e-05	153	-	48	-	-	-	-
chrY	11923230	A	n	GG	9.9429e-130	262	-	48	-	-	-	-
chrY	11923318	T	n	GG	2.7555e-131	282	-	41	-	-	-	-
chrY	11923359	G	n	TT	1.3808e-69	168	-	41	-	-	-	-
chrY	11923607	T	n	GG	2.6591e-119	201	-	171	-	-	-	-
chrY	11923778	A	n	CC	6.5211e-113	179	-	52	-	-	-	-
chrY	11923830	T	n	AA	2.1379e-13	70	-	29	rs73618449	single	+	AT
chrY	11923859	C	n	GG	1.5384e-72	125	-	8	rs67082113	single	+	CG
chrY	11923867	A	n	GG	8.3638e-250	218	-	8	-	-	-	-
chrY	11923919	A	n	CC	1.6702e-197	415	-	52	-	-	-	-
chrY	11924391	A	n	GG	6.374e-170	225	LSAU.Satellite.Satellite	2	-	-	-	-
chrY	11924393	T	n	CC	7.9211e-312	178	LSAU.Satellite.Satellite	2	-	-	-	-
chrY	11924462	T	n	CC	0	2359	LSAU.Satellite.Satellite	44	-	-	-	-
chrY	11924506	T	n	GG	8.8194e-239	261	LSAU.Satellite.Satellite	3	-	-	-	-
chrY	11924509	T	n	CC	1.0105e-285	182	LSAU.Satellite.Satellite	3	-	-	-	-
chrY	11924514	C	n	GG	3.4238e-103	87	LSAU.Satellite.Satellite	5	rs36168755	in-del	+	-A
chrY	11924556	G	n	TT	0	186	-	29	-	-	-	-
chrY	11924585	A	n	CC	1.2835e-24	26	BSR/Beta.Satellite.Satellite	11	-	-	-	-
chrY	11924596	G	n	TT	7.127e-09	26	BSR/Beta.Satellite.Satellite	11	-	-	-	-
chrY	11924612	G	n	TT	1.1788e-68	49	BSR/Beta.Satellite.Satellite	8	-	-	-	-
chrY	11924620	T	n	CC	8.938e-48	76	BSR/Beta.Satellite.Satellite	8	-	-	-	-
chrY	11924660	C	n	GG	0	161	BSR/Beta.Satellite.Satellite	40	-	-	-	-
chrY	11924701	G	n	AA	2.6037e-162	85	BSR/Beta.Satellite.Satellite	41	rs62611639	single	+	AG
chrY	11924774	T	n	CC	0	683	BSR/Beta.Satellite.Satellite	73	rs62611640	single	+	CT
chrY	11924913	T	n	CC	4.1663e-14	22	BSR/Beta.Satellite.Satellite	5	-	-	-	-
chrY	11924918	T	n	CC	2.994e-21	17	BSR/Beta.Satellite.Satellite	5	rs62611642	single	+	AT
chrY	11924950	A	n	GG	2.058e-244	135	BSR/Beta.Satellite.Satellite	15	rs62611644	single	+	AG
chrY	11924965	T	n	CC	0	380	BSR/Beta.Satellite.Satellite	15	rs62611645	single	+	CT
chrY	11925143	G	n	AA	2.3608e-62	59	BSR/Beta.Satellite.Satellite	28	-	-	-	-
chrY	11925171	A	n	GG	2.6554e-28	42	BSR/Beta.Satellite.Satellite	25	rs35338814	single	-	CT
chrY	11925196	A	n	TT	5.692e-111	50	BSR/Beta.Satellite.Satellite	2	rs62611647	single	+	AT
chrY	11925198	T	n	CC	4.0193e-71	49	BSR/Beta.Satellite.Satellite	2	rs62611649	single	+	CT
chrY	11925233	C	n	AA	1.2638e-191	100	BSR/Beta.Satellite.Satellite	35	-	-	-	-
chrY	11925440	A	n	TT	0	194	BSR/Beta.Satellite.Satellite	4	-	-	-	-
chrY	11925444	A	n	CC	0	226	BSR/Beta.Satellite.Satellite	1	-	-	-	-
chrY	11925445	A	n	TT	0	232	BSR/Beta.Satellite.Satellite	1	rs62611651	single	+	AT
chrY	11925492	T	n	AA	3.8116e-270	144	BSR/Beta.Satellite.Satellite	12	rs62611652	single	+	AT
chrY	11925504	G	n	CC	0	139	BSR/Beta.Satellite.Satellite	12	-	-	-	-
chrY	11925551	A	n	TT	8.7358e-57	29	BSR/Beta.Satellite.Satellite	9	-	-	-	-
chrY	11925560	T	n	CC	4.6816e-46	23	BSR/Beta.Satellite.Satellite	9	-	-	-	-
chrY	11925846	G	n	CC	4.0344e-84	74	BSR/Beta.Satellite.Satellite	47	rs71301631	mnp	+	lengthTooLong
chrY	11925893	T	n	GG	1.1204e-265	150	BSR/Beta.Satellite.Satellite	29	rs71301631	mnp	+	lengthTooLong
chrY	11925922	A	n	CC	3.318e-129	601	BSR/Beta.Satellite.Satellite	29	rs71301631	mnp	+	lengthTooLong
chrY	11925976	C	n	AA	3.6819e-18	60	BSR/Beta.Satellite.Satellite	11	rs71301631	mnp	+	lengthTooLong
chrY	11925987	G	n	AA	5.4037e-07	19	BSR/Beta.Satellite.Satellite	11	rs71301631	mnp	+	lengthTooLong
chrY	11926015	T	n	AA	1.3552e-08	86	BSR/Beta.Satellite.Satellite	28	rs71301631	mnp	+	lengthTooLong
chrY	11926082	A	n	GG	0	927	BSR/Beta.Satellite.Satellite	67	rs71301631	mnp	+	lengthTooLong
chrY	11926255	A	n	CC	6.6698e-15	37	BSR/Beta.Satellite.Satellite	173	rs71301631	mnp	+	lengthTooLong
chrY	11926481	G	n	CC	0	219	BSR/Beta.Satellite.Satellite	61	rs71301631	mnp	+	lengthTooLong
chrY	11926542	C	n	GG	0	954	BSR/Beta.Satellite.Satellite	28	rs71301631	mnp	+	lengthTooLong
chrY	11926570	G	n	CC	3.673e-181	177	BSR/Beta.Satellite.Satellite	28	rs71301631	mnp	+	lengthTooLong
chrY	11926604	T	n	CC	0.00022627	51	BSR/Beta.Satellite.Satellite	34	rs71301631	mnp	+	lengthTooLong
chrY	11926679	T	n	GG	2.3426e-11	17	BSR/Beta.Satellite.Satellite	40	rs71301631	mnp	+	lengthTooLong
chrY	11926719	A	n	GG	3.8406e-203	127	BSR/Beta.Satellite.Satellite	25	rs71301631	mnp	+	lengthTooLong
chrY	11926744	G	n	TT	0	245	BSR/Beta.Satellite.Satellite	25	rs71301631	mnp	+	lengthTooLong
chrY	11926792	C	n	GG	4.7198e-35	375	BSR/Beta.Satellite.Satellite	26	rs71301631	mnp	+	lengthTooLong
chrY	11926818	A	n	GG	0	395	BSR/Beta.Satellite.Satellite	2	rs71301631	mnp	+	lengthTooLong
chrY	11926820	A	n	GG	2.3125e-231	386	BSR/Beta.Satellite.Satellite	2	rs71301631	mnp	+	lengthTooLong
chrY	11926864	C	n	AA	0	257	BSR/Beta.Satellite.Satellite	44	rs71301631	mnp	+	lengthTooLong
chrY	11927138	A	n	GG	7.0961e-33	17	BSR/Beta.Satellite.Satellite	149	rs71301631	mnp	+	lengthTooLong
chrY	11927287	C	n	TT	1.8947e-46	31	BSR/Beta.Satellite.Satellite	26	rs71301631	mnp	+	lengthTooLong
chrY	11927313	A	n	GG	3.1015e-95	107	BSR/Beta.Satellite.Satellite	14	rs71301631	mnp	+	lengthTooLong
chrY	11927327	A	n	CC	0	202	BSR/Beta.Satellite.Satellite	3	rs71301631	mnp	+	lengthTooLong
chrY	11927330	T	n	CC	8.7644e-174	246	BSR/Beta.Satellite.Satellite	3	rs71301631	mnp	+	lengthTooLong
chrY	11927379	C	n	AA	1.0523e-276	114	BSR/Beta.Satellite.Satellite	10	rs71301631	mnp	+	lengthTooLong
chrY	11927389	A	n	TT	1.529e-33	91	BSR/Beta.Satellite.Satellite	6	rs71301631	mnp	+	lengthTooLong
chrY	11927395	A	n	GG	1.3631e-125	83	BSR/Beta.Satellite.Satellite	6	rs71301631	mnp	+	lengthTooLong
chrY	11927407	T	n	CC	2.1273e-209	107	BSR/Beta.Satellite.Satellite	12	rs71301631	mnp	+	lengthTooLong
chrY	11927455	A	n	CC	2.1946e-177	184	BSR/Beta.Satellite.Satellite	7	rs71301631	mnp	+	lengthTooLong
chrY	11927462	A	n	CC	4.4421e-202	172	BSR/Beta.Satellite.Satellite	7	rs71301631	mnp	+	lengthTooLong
chrY	11927564	T	n	CC	0	836	BSR/Beta.Satellite.Satellite	37	rs71301631	mnp	+	lengthTooLong
chrY	11927601	T	n	GG	1.6345e-106	71	BSR/Beta.Satellite.Satellite	37	rs71301631	mnp	+	lengthTooLong
chrY	11927766	C	n	TT	3.0142e-37	20	BSR/Beta.Satellite.Satellite	5	rs71301631	mnp	+	lengthTooLong
chrY	11927771	A	n	CC	4.2067e-45	23	BSR/Beta.Satellite.Satellite	5	rs71301631	mnp	+	lengthTooLong
chrY	11927783	A	n	TT	1.1551e-73	48	BSR/Beta.Satellite.Satellite	12	rs71301631	mnp	+	lengthTooLong
chrY	11927835	G	n	AA	0	255	BSR/Beta.Satellite.Satellite	52	rs71301631	mnp	+	lengthTooLong
chrY	11927902	G	n	AA	9.8502e-69	47	BSR/Beta.Satellite.Satellite	67	rs71301631	mnp	+	lengthTooLong
chrY	11928059	G	n	AA	6.8807e-81	37	BSR/Beta.Satellite.Satellite	10	rs71301631	mnp	+	lengthTooLong
chrY	11928069	T	n	CC	9.0033e-49	68	BSR/Beta.Satellite.Satellite	10	rs71301631	mnp	+	lengthTooLong
chrY	11928081	T	n	GG	0	224	BSR/Beta.Satellite.Satellite	12	rs71301631	mnp	+	lengthTooLong
chrY	11928116	G	n	CC	5.7986e-153	973	BSR/Beta.Satellite.Satellite	24	rs71301631	mnp	+	lengthTooLong
chrY	11928140	A	n	TT	6.5529e-88	99	BSR/Beta.Satellite.Satellite	3	rs71301631	mnp	+	lengthTooLong
chrY	11928143	G	n	CC	6.3912e-197	96	BSR/Beta.Satellite.Satellite	3	rs71301631	mnp	+	lengthTooLong
chrY	11928148	T	n	GG	5.3368e-131	98	BSR/Beta.Satellite.Satellite	5	rs71301631	mnp	+	lengthTooLong
chrY	11928325	T	n	GG	1.3973e-35	447	BSR/Beta.Satellite.Satellite	91	rs71301631	mnp	+	lengthTooLong
chrY	11928416	C	n	TT	5.2522e-103	91	BSR/Beta.Satellite.Satellite	91	rs71301631	mnp	+	lengthTooLong
chrY	11928737	A	n	GG	0.07426	23	BSR/Beta.Satellite.Satellite	28	rs71301631	mnp	+	lengthTooLong
chrY	11928765	T	n	GG	3.3428e-259	467	BSR/Beta.Satellite.Satellite	28	rs71301631	mnp	+	lengthTooLong
chrY	11928952	T	n	CC	1.9658e-08	6	BSR/Beta.Satellite.Satellite	10	rs71301631	mnp	+	lengthTooLong
chrY	11928962	A	n	GG	1.1754e-10	9	BSR/Beta.Satellite.Satellite	10	rs71301631	mnp	+	lengthTooLong
chrY	11929045	C	n	GG	1.802e-52	48	BSR/Beta.Satellite.Satellite	83	rs71301631	mnp	+	lengthTooLong
chrY	11929287	T	n	GG	0	770	BSR/Beta.Satellite.Satellite	50	rs71301631	mnp	+	lengthTooLong
chrY	11929337	A	n	CC	0	146	BSR/Beta.Satellite.Satellite	9	rs71301631	mnp	+	lengthTooLong
chrY	11929346	T	n	CC	1.3939e-53	88	BSR/Beta.Satellite.Satellite	9	rs71301631	mnp	+	lengthTooLong
chrY	11929779	A	n	TT	2.3012e-10	27	BSR/Beta.Satellite.Satellite	9	rs71301631	mnp	+	lengthTooLong
chrY	11929788	T	n	CC	4.3697e-167	118	BSR/Beta.Satellite.Satellite	9	rs71301631	mnp	+	lengthTooLong
chrY	11929859	G	n	AA	0	420	-	71	rs71301631	mnp	+	lengthTooLong
chrY	11929964	A	n	GG	7.8964e-31	278	-	21	rs71301631	mnp	+	lengthTooLong
chrY	11929985	T	n	GG	0	611	-	21	rs71301631	mnp	+	lengthTooLong
chrY	11930028	A	n	CC	6.4483e-200	558	-	7	rs71301631	mnp	+	lengthTooLong
chrY	11930035	C	n	GG	7.8605e-79	635	-	7	rs71301631	mnp	+	lengthTooLong
chrY	11930086	T	n	AA	0	1076	-	22	rs71301631	mnp	+	lengthTooLong
chrY	11930108	C	n	TT	1.0725e-198	121	-	1	rs71301631	mnp	+	lengthTooLong
chrY	11930109	A	n	CC	2.5419e-165	114	-	1	rs71301631	mnp	+	lengthTooLong
chrY	11930168	G	n	CC	3.6404e-67	88	-	59	rs71301631	mnp	+	lengthTooLong
chrY	11930228	T	n	AA	2.9258e-13	464	-	60	rs71301631	mnp	+	lengthTooLong
chrY	11930432	C	n	GG	3.4629e-116	111	-	17	rs71301631	mnp	+	lengthTooLong
chrY	11930449	T	n	GG	3.5388e-164	168	-	17	rs71301631	mnp	+	lengthTooLong
chrY	11930558	A	n	CC	1.1675e-32	276	LSAU.Satellite.Satellite	67	rs71301631	mnp	+	lengthTooLong
chrY	11930625	A	n	CC	2.9751e-87	248	-	67	rs71301631	mnp	+	lengthTooLong
chrY	11930744	T	n	AA	2.7035e-195	179	-	3	rs71301631	mnp	+	lengthTooLong
chrY	11930747	C	n	GG	1.8728e-154	232	-	3	rs71301631	mnp	+	lengthTooLong
chrY	11930778	T	n	CC	4.791e-123	388	-	26	rs71301631	mnp	+	lengthTooLong
chrY	11930804	G	n	AA	1.045e-118	392	-	26	rs71301631	mnp	+	lengthTooLong
chrY	11930854	T	n	GG	3.2356e-256	548	-	50	rs71301631	mnp	+	lengthTooLong
chrY	11930917	G	n	CC	6.5138e-308	222	-	47	rs71301631	mnp	+	lengthTooLong
chrY	11930964	T	n	CC	5.6969e-15	96	-	47	rs71301631	mnp	+	lengthTooLong
chrY	11931017	A	n	GG	2.227e-120	118	-	53	rs71301631	mnp	+	lengthTooLong
chrY	11931102	G	n	CC	3.5555e-28	139	-	85	rs71301631	mnp	+	lengthTooLong
chrY	11931195	T	n	GG	1.0087e-209	390	-	93	rs71301631	mnp	+	lengthTooLong
chrY	11931465	T	n	AA	1.1507e-09	165	-	191	rs71301631	mnp	+	lengthTooLong
chrY	11931656	T	n	CC	2.0848e-218	197	-	50	rs71301631	mnp	+	lengthTooLong
chrY	11931706	A	n	CC	3.9108e-165	169	-	2	rs71301631	mnp	+	lengthTooLong
chrY	11931708	A	n	GG	5.1942e-154	145	-	2	rs71301631	mnp	+	lengthTooLong
chrY	11931809	T	n	CC	5.2383e-173	312	-	20	rs71301631	mnp	+	lengthTooLong
chrY	11931829	A	n	GG	2.006e-22	117	-	12	rs71301631	mnp	+	lengthTooLong
chrY	11931841	T	n	CC	1.2372e-06	38	-	12	rs71301631	mnp	+	lengthTooLong
chrY	11931882	T	n	GG	2.5926e-161	383	-	41	rs71301631	mnp	+	lengthTooLong
chrY	11931929	T	n	GG	0	554	-	27	rs71301631	mnp	+	lengthTooLong
chrY	11931956	A	n	CC	3.5128e-213	484	-	27	rs71301631	mnp	+	lengthTooLong
chrY	11932063	T	n	CC	3.001e-126	99	-	104	rs71301631	mnp	+	lengthTooLong
chrY	11932167	C	n	TT	4.6276e-253	1145	LSAU.Satellite.Satellite	38	rs71301631	mnp	+	lengthTooLong
chrY	11932205	A	n	CC	1.7135e-05	31	LSAU.Satellite.Satellite	38	rs71301631	mnp	+	lengthTooLong
chrY	11932395	A	n	CC	2.1785e-06	63	LSAU.Satellite.Satellite	6	rs71301631	mnp	+	lengthTooLong
chrY	11932401	T	n	GG	2.728e-228	153	LSAU.Satellite.Satellite	6	rs71301631	mnp	+	lengthTooLong
chrY	11932555	A	n	CC	1.8383e-23	65	LSAU.Satellite.Satellite	125	rs71301631	mnp	+	lengthTooLong
chrY	11932680	C	n	TT	2.0096e-81	94	BSR/Beta.Satellite.Satellite	24	rs71301631	mnp	+	lengthTooLong
chrY	11932704	A	n	CC	8.9824e-108	66	BSR/Beta.Satellite.Satellite	24	rs71301631	mnp	+	lengthTooLong
chrY	11932766	T	n	AA	0	146	BSR/Beta.Satellite.Satellite	12	rs71301631	mnp	+	lengthTooLong
chrY	11932778	C	n	GG	4.1747e-269	139	BSR/Beta.Satellite.Satellite	12	rs71301631	mnp	+	lengthTooLong
chrY	11932817	C	n	TT	0.00017379	10	BSR/Beta.Satellite.Satellite	1	rs71301631	mnp	+	lengthTooLong
chrY	11932818	A	n	GG	0.0075183	10	BSR/Beta.Satellite.Satellite	1	rs71301631	mnp	+	lengthTooLong
chrY	11932842	C	n	GG	0.00084431	5	BSR/Beta.Satellite.Satellite	7	rs71301631	mnp	+	lengthTooLong
chrY	11932849	C	n	GG	6.7936e-05	5	BSR/Beta.Satellite.Satellite	7	rs71301631	mnp	+	lengthTooLong
chrY	11932858	G	n	CC	3.3623e-05	5	BSR/Beta.Satellite.Satellite	9	rs71301631	mnp	+	lengthTooLong
chrY	11933040	T	n	GG	1.1657e-35	20	BSR/Beta.Satellite.Satellite	3	rs71301631	mnp	+	lengthTooLong
chrY	11933043	T	n	CC	7.9487e-21	21	BSR/Beta.Satellite.Satellite	3	rs71301631	mnp	+	lengthTooLong
chrY	11933187	A	n	GG	0.0037689	7	BSR/Beta.Satellite.Satellite	144	rs71301631	mnp	+	lengthTooLong
chrY	11933506	G	n	TT	1.9931e-147	184	BSR/Beta.Satellite.Satellite	3	rs71301631	mnp	+	lengthTooLong
chrY	11933509	A	n	GG	0	169	BSR/Beta.Satellite.Satellite	3	rs71301631	mnp	+	lengthTooLong
chrY	11933521	T	n	CC	5.6889e-138	97	BSR/Beta.Satellite.Satellite	12	rs71301631	mnp	+	lengthTooLong
chrY	11933534	G	n	CC	0.001267	23	BSR/Beta.Satellite.Satellite	13	rs71301631	mnp	+	lengthTooLong
chrY	11933555	T	n	CC	0.014611	9	BSR/Beta.Satellite.Satellite	9	rs71301631	mnp	+	lengthTooLong
chrY	11933564	G	n	CC	0.057918	9	BSR/Beta.Satellite.Satellite	9	rs71301631	mnp	+	lengthTooLong
chrY	11933617	G	n	AA	3.9827e-88	71	BSR/Beta.Satellite.Satellite	53	rs71301631	mnp	+	lengthTooLong
chrY	11933883	T	n	CC	1.0365e-35	27	BSR/Beta.Satellite.Satellite	127	rs71301631	mnp	+	lengthTooLong
chrY	11934010	A	n	GG	1.4115e-24	49	BSR/Beta.Satellite.Satellite	83	rs71301631	mnp	+	lengthTooLong
chrY	11934093	C	n	GG	3.1015e-121	118	BSR/Beta.Satellite.Satellite	83	rs71301631	mnp	+	lengthTooLong
chrY	11934229	A	n	TT	1.0659e-25	28	BSR/Beta.Satellite.Satellite	136	rs71301631	mnp	+	lengthTooLong
chrY	11934987	C	n	TT	0.14262	27	BSR/Beta.Satellite.Satellite	30	rs71301631	mnp	+	lengthTooLong
chrY	11935017	T	n	AA	1.3726e-99	67	BSR/Beta.Satellite.Satellite	5	rs71301631	mnp	+	lengthTooLong
chrY	11935022	A	n	GG	1.4941e-74	76	BSR/Beta.Satellite.Satellite	5	rs71301631	mnp	+	lengthTooLong
chrY	11935090	G	n	AA	3.8113e-196	302	BSR/Beta.Satellite.Satellite	68	rs71301631	mnp	+	lengthTooLong
chrY	11935300	C	n	AA	0.004601	16	BSR/Beta.Satellite.Satellite	84	rs71301631	mnp	+	lengthTooLong
chrY	11935384	T	n	GG	3.5672e-11	62	BSR/Beta.Satellite.Satellite	84	rs71301631	mnp	+	lengthTooLong
chrY	11935558	T	n	GG	0.0014237	183	BSR/Beta.Satellite.Satellite	174	rs71301631	mnp	+	lengthTooLong
chrY	11935848	C	n	TT	2.6088e-200	311	BSR/Beta.Satellite.Satellite	29	rs71301631	mnp	+	lengthTooLong
chrY	11935877	A	n	CC	1.6506e-296	185	BSR/Beta.Satellite.Satellite	29	rs71301631	mnp	+	lengthTooLong
chrY	11935960	A	n	CC	0	190	BSR/Beta.Satellite.Satellite	83	rs71301631	mnp	+	lengthTooLong
chrY	11936128	A	n	GG	0	249	BSR/Beta.Satellite.Satellite	62	rs71301631	mnp	+	lengthTooLong
chrY	11936190	A	n	CC	7.3102e-79	48	BSR/Beta.Satellite.Satellite	2	rs71301631	mnp	+	lengthTooLong
chrY	11936192	T	n	GG	2.046e-59	53	BSR/Beta.Satellite.Satellite	2	rs71301631	mnp	+	lengthTooLong
chrY	11936266	T	n	CC	5.2251e-12	25	BSR/Beta.Satellite.Satellite	74	rs71301631	mnp	+	lengthTooLong
chrY	11936409	C	n	GG	1.7673e-58	40	BSR/Beta.Satellite.Satellite	51	rs71301631	mnp	+	lengthTooLong
chrY	11936460	T	n	GG	1.0916e-315	1325	-	33	rs71301631	mnp	+	lengthTooLong
chrY	11936493	A	n	CC	1.925e-247	218	-	33	rs71301631	mnp	+	lengthTooLong
chrY	11936526	T	n	GG	6.064e-272	246	-	6	rs71301631	mnp	+	lengthTooLong
chrY	11936532	A	n	CC	0	272	-	6	rs71301631	mnp	+	lengthTooLong
chrY	11936552	T	n	CC	0	1122	-	20	rs71301631	mnp	+	lengthTooLong
chrY	11936608	T	n	GG	0	1994	-	30	rs71301631	mnp	+	lengthTooLong
chrY	11936638	C	n	GG	0	374	-	30	rs71301631	mnp	+	lengthTooLong
chrY	11936712	G	n	CC	0	678	-	33	rs71301631	mnp	+	lengthTooLong
chrY	11936745	T	n	CC	1.6296e-217	333	-	13	rs71301631	mnp	+	lengthTooLong
chrY	11936758	G	n	AA	5.4792e-84	106	-	13	rs71301631	mnp	+	lengthTooLong
chrY	11936798	A	n	TT	4.4165e-144	128	-	29	rs71301631	mnp	+	lengthTooLong
chrY	11936827	T	n	GG	5.7027e-57	380	-	2	rs71301631	mnp	+	lengthTooLong
chrY	11936829	A	n	GG	2.6215e-188	443	-	2	rs71301631	mnp	+	lengthTooLong
chrY	11936859	T	n	CC	1.1649e-291	952	-	3	rs71301631	mnp	+	lengthTooLong
chrY	11936862	T	n	GG	1.1477e-309	984	-	3	rs71301631	mnp	+	lengthTooLong
chrY	11936913	G	n	CC	7.0216e-123	131	-	51	rs71301631	mnp	+	lengthTooLong
chrY	11937060	A	n	GG	3.7161e-70	98	-	11	rs71301631	mnp	+	lengthTooLong
chrY	11937071	A	n	GG	2.3004e-258	479	-	11	rs71301631	mnp	+	lengthTooLong
chrY	11937180	A	n	CC	2.1378e-24	175	LSAU.Satellite.Satellite	109	rs71301631	mnp	+	lengthTooLong
chrY	11937379	T	n	AA	4.2874e-16	179	-	44	rs71301631	mnp	+	lengthTooLong
chrY	11937423	C	n	AA	4.2976e-89	99	-	43	rs71301631	mnp	+	lengthTooLong
chrY	11937466	T	n	CC	1.368e-140	118	-	27	rs71301631	mnp	+	lengthTooLong
chrY	11937493	A	n	GG	4.8303e-120	155	-	6	rs71301631	mnp	+	lengthTooLong
chrY	11937499	G	n	CC	3.0114e-08	124	-	6	rs71301631	mnp	+	lengthTooLong
chrY	11937873	A	n	CC	1.0864e-236	254	-	179	rs71301631	mnp	+	lengthTooLong
chrY	11938052	A	n	CC	4.6926e-49	340	-	105	rs71301631	mnp	+	lengthTooLong
chrY	11938157	C	n	TT	3.5592e-28	206	-	12	rs71301631	mnp	+	lengthTooLong
chrY	11938169	T	n	GG	1.5824e-124	383	-	12	rs71301631	mnp	+	lengthTooLong
chrY	11938210	C	n	AA	1.3026e-92	272	-	8	rs71301631	mnp	+	lengthTooLong
chrY	11938218	T	n	CC	2.7757e-09	375	-	8	rs71301631	mnp	+	lengthTooLong
chrY	11938257	A	n	CC	0	349	-	27	rs71301631	mnp	+	lengthTooLong
chrY	11938284	G	n	CC	6.0374e-265	537	-	7	rs71301631	mnp	+	lengthTooLong
chrY	11938291	T	n	CC	3.7326e-245	878	-	7	rs71301631	mnp	+	lengthTooLong
chrY	11938444	G	n	CC	3.9587e-84	931	-	35	rs71301631	mnp	+	lengthTooLong
chrY	11938479	A	n	GG	0.27187	41	-	3	rs71301631	mnp	+	lengthTooLong
chrY	11938482	T	n	CC	0.46088	34	-	3	rs71301631	mnp	+	lengthTooLong
chrY	11938568	T	n	GG	1.5429e-32	94	-	14	rs71301631	mnp	+	lengthTooLong
chrY	11938582	T	n	GG	4.838e-91	106	-	14	rs71301631	mnp	+	lengthTooLong
chrY	11938612	A	n	GG	1.0981e-230	286	-	30	rs71301631	mnp	+	lengthTooLong
chrY	11938795	T	n	CC	6.9105e-133	920	LSAU.Satellite.Satellite	183	rs71301631	mnp	+	lengthTooLong
chrY	11938996	A	n	CC	5.9779e-109	352	LSAU.Satellite.Satellite	44	rs71301631	mnp	+	lengthTooLong
chrY	11939040	T	n	CC	4.8391e-145	148	LSAU.Satellite.Satellite	7	rs71301631	mnp	+	lengthTooLong
chrY	11939047	A	n	CC	3.7234e-227	195	LSAU.Satellite.Satellite	7	rs71301631	mnp	+	lengthTooLong
chrY	11939135	T	n	CC	4.7971e-41	153	LSAU.Satellite.Satellite	6	rs71301631	mnp	+	lengthTooLong
chrY	11939141	A	n	CC	1.3519e-213	239	LSAU.Satellite.Satellite	6	rs71301631	mnp	+	lengthTooLong
chrY	11939174	A	n	GG	3.0237e-105	854	LSAU.Satellite.Satellite	33	rs71301631	mnp	+	lengthTooLong
chrY	11939207	G	n	TT	1.4721e-119	93	BSR/Beta.Satellite.Satellite	33	rs71301631	mnp	+	lengthTooLong
chrY	11939313	T	n	GG	5.1092e-153	78	BSR/Beta.Satellite.Satellite	2	rs71301631	mnp	+	lengthTooLong
chrY	11939315	C	n	TT	2.7667e-151	80	BSR/Beta.Satellite.Satellite	2	rs71301631	mnp	+	lengthTooLong
chrY	11939378	A	n	CC	4.5062e-238	160	BSR/Beta.Satellite.Satellite	63	rs71301631	mnp	+	lengthTooLong
chrY	11939467	T	n	GG	3.4324e-10	13	BSR/Beta.Satellite.Satellite	21	rs71301631	mnp	+	lengthTooLong
chrY	11939488	C	n	GG	5.7927e-08	21	BSR/Beta.Satellite.Satellite	21	rs71301631	mnp	+	lengthTooLong
chrY	11939519	C	n	TT	9.0088e-59	49	BSR/Beta.Satellite.Satellite	11	rs71301631	mnp	+	lengthTooLong
chrY	11939530	T	n	AA	3.7203e-86	63	BSR/Beta.Satellite.Satellite	11	rs71301631	mnp	+	lengthTooLong
chrY	11939549	C	n	GG	4.3278e-211	107	BSR/Beta.Satellite.Satellite	19	rs71301631	mnp	+	lengthTooLong
chrY	11939579	T	n	CC	0	911	BSR/Beta.Satellite.Satellite	30	rs71301631	mnp	+	lengthTooLong
chrY	11940243	T	n	GG	1.8856e-170	74	BSR/Beta.Satellite.Satellite	38	rs71228878	mnp	-	ATTGTGACTTGTGG
chrY	11940281	G	n	AA	1.1686e-213	297	BSR/Beta.Satellite.Satellite	38	rs71228878	mnp	-	ATTGTGACTTGTGG
chrY	11940350	T	n	CC	3.5374e-122	694	BSR/Beta.Satellite.Satellite	42	rs71228878	mnp	-	ATTGTGACTTGTGG
chrY	11940392	C	n	AA	0	757	BSR/Beta.Satellite.Satellite	42	rs71228878	mnp	-	ATTGTGACTTGTGG
chrY	11940438	A	n	GG	1.3476e-55	54	BSR/Beta.Satellite.Satellite	46	rs71228878	mnp	-	ATTGTGACTTGTGG
chrY	11940486	C	n	AA	1.7039e-55	40	BSR/Beta.Satellite.Satellite	11	rs71228878	mnp	-	ATTGTGACTTGTGG
chrY	11940497	T	n	CC	2.6037e-22	58	BSR/Beta.Satellite.Satellite	11	rs71228878	mnp	-	ATTGTGACTTGTGG
chrY	11940988	T	n	CC	3.6418e-147	95	BSR/Beta.Satellite.Satellite	146	rs35444686	single	+	AT
chrY	11941134	A	n	GG	2.8396e-75	64	BSR/Beta.Satellite.Satellite	21	rs35444686	single	+	AT
chrY	11941155	G	n	CC	8.5237e-46	55	BSR/Beta.Satellite.Satellite	21	rs35444686	single	+	AT
chrY	11941183	G	n	TT	8.9435e-16	41	BSR/Beta.Satellite.Satellite	28	rs35444686	single	+	AT
chrY	11941226	A	n	GG	1.4556e-157	103	BSR/Beta.Satellite.Satellite	27	rs35444686	single	+	AT
chrY	11941253	C	n	GG	1.7615e-05	30	BSR/Beta.Satellite.Satellite	27	rs35444686	single	+	AT
chrY	11941362	C	n	AA	9.2054e-19	73	BSR/Beta.Satellite.Satellite	23	rs71297008	mnp	+	ATGAGTGT
chrY	11941385	A	n	CC	0.043159	6	BSR/Beta.Satellite.Satellite	23	rs71297008	mnp	+	ATGAGTGT
chrY	11941452	C	n	TT	1.0592e-31	31	BSR/Beta.Satellite.Satellite	10	rs71297008	mnp	+	ATGAGTGT
chrY	11941462	A	n	GG	7.302e-87	56	BSR/Beta.Satellite.Satellite	10	rs71297008	mnp	+	ATGAGTGT
chrY	11941507	T	n	AA	4.6674e-206	191	BSR/Beta.Satellite.Satellite	5	rs71297008	mnp	+	ATGAGTGT
chrY	11941512	G	n	TT	0	196	BSR/Beta.Satellite.Satellite	1	rs71297008	mnp	+	ATGAGTGT
chrY	11941513	C	n	GG	0	194	BSR/Beta.Satellite.Satellite	1	rs71297008	mnp	+	ATGAGTGT
chrY	11941572	T	n	CC	0	506	BSR/Beta.Satellite.Satellite	22	rs71297008	mnp	+	ATGAGTGT
chrY	11941594	T	n	CC	4.8338e-104	77	BSR/Beta.Satellite.Satellite	22	rs71297008	mnp	+	ATGAGTGT
chrY	11941649	T	n	GG	1.4666e-83	84	BSR/Beta.Satellite.Satellite	55	rs71297008	mnp	+	ATGAGTGT
chrY	11941713	A	n	GG	4.9877e-63	68	BSR/Beta.Satellite.Satellite	9	rs71297008	mnp	+	ATGAGTGT
chrY	11941722	A	n	CC	3.7204e-22	26	BSR/Beta.Satellite.Satellite	9	rs71297008	mnp	+	ATGAGTGT
chrY	11941811	A	n	GG	0	587	BSR/Beta.Satellite.Satellite	88	rs71297008	mnp	+	ATGAGTGT
chrY	11941899	G	n	CC	4.0358e-132	63	BSR/Beta.Satellite.Satellite	7	rs71297008	mnp	+	ATGAGTGT
chrY	11941906	T	n	GG	2.3333e-194	86	BSR/Beta.Satellite.Satellite	7	rs71297008	mnp	+	ATGAGTGT
chrY	11941960	T	n	GG	2.8365e-34	40	BSR/Beta.Satellite.Satellite	12	rs71297008	mnp	+	ATGAGTGT
chrY	11941972	A	n	GG	2.5912e-38	43	BSR/Beta.Satellite.Satellite	12	rs71297008	mnp	+	ATGAGTGT
chrY	11942162	C	n	TT	3.9336e-284	320	BSR/Beta.Satellite.Satellite	36	rs71297008	mnp	+	ATGAGTGT
chrY	11942198	A	n	CC	1.2806e-13	10	BSR/Beta.Satellite.Satellite	36	rs71297008	mnp	+	ATGAGTGT
chrY	11942372	A	n	CC	0	468	BSR/Beta.Satellite.Satellite	44	rs71297008	mnp	+	ATGAGTGT
chrY	11942416	A	n	GG	0.46517	78	BSR/Beta.Satellite.Satellite	24	rs71297008	mnp	+	ATGAGTGT
chrY	11942440	A	n	CC	1.1425e-12	10	BSR/Beta.Satellite.Satellite	3	rs71297008	mnp	+	ATGAGTGT
chrY	11942443	A	n	CC	1.6413e-15	12	BSR/Beta.Satellite.Satellite	3	rs71297008	mnp	+	ATGAGTGT
chrY	11942510	A	n	CC	0	190	BSR/Beta.Satellite.Satellite	37	rs71297008	mnp	+	ATGAGTGT
chrY	11942547	C	n	TT	9.4455e-84	78	BSR/Beta.Satellite.Satellite	37	rs71297008	mnp	+	ATGAGTGT
chrY	11942653	T	n	AA	0	152	BSR/Beta.Satellite.Satellite	69	rs71297008	mnp	+	ATGAGTGT
chrY	11942722	A	n	TT	2.7259e-80	37	BSR/Beta.Satellite.Satellite	35	rs71297008	mnp	+	ATGAGTGT
chrY	11942757	T	n	CC	5.4511e-27	36	BSR/Beta.Satellite.Satellite	35	rs71297008	mnp	+	ATGAGTGT
chrY	11942805	A	n	TT	1.6718e-89	82	BSR/Beta.Satellite.Satellite	12	rs71297008	mnp	+	ATGAGTGT
chrY	11942817	A	n	CC	1.2046e-60	44	BSR/Beta.Satellite.Satellite	6	rs71297008	mnp	+	ATGAGTGT
chrY	11942823	G	n	AA	1.8598e-33	38	BSR/Beta.Satellite.Satellite	6	rs71297008	mnp	+	ATGAGTGT
chrY	11942881	C	n	AA	1.8089e-190	106	BSR/Beta.Satellite.Satellite	44	rs71297008	mnp	+	ATGAGTGT
chrY	11942925	C	n	TT	9.984e-42	24	BSR/Beta.Satellite.Satellite	1	rs71297008	mnp	+	ATGAGTGT
chrY	11942926	A	n	GG	3.6413e-43	25	BSR/Beta.Satellite.Satellite	1	rs71297008	mnp	+	ATGAGTGT
chrY	11943058	T	n	CC	8.0514e-317	206	BSR/Beta.Satellite.Satellite	22	rs71297008	mnp	+	ATGAGTGT
chrY	11943080	A	n	TT	3.9206e-10	28	BSR/Beta.Satellite.Satellite	3	rs71297008	mnp	+	ATGAGTGT
chrY	11943083	T	n	CC	1.6565e-16	28	BSR/Beta.Satellite.Satellite	3	rs71297008	mnp	+	ATGAGTGT
chrY	11943174	A	n	CC	9.2387e-19	29	BSR/Beta.Satellite.Satellite	91	rs71297008	mnp	+	ATGAGTGT
chrY	11943694	C	n	GG	9.8297e-288	196	BSR/Beta.Satellite.Satellite	14	rs71297008	mnp	+	ATGAGTGT
chrY	11943708	A	n	CC	0	260	BSR/Beta.Satellite.Satellite	14	rs71297008	mnp	+	ATGAGTGT
chrY	11943762	T	n	AA	2.1894e-71	70	BSR/Beta.Satellite.Satellite	54	rs71297008	mnp	+	ATGAGTGT
chrY	11943859	A	n	GG	1.0253e-280	216	BSR/Beta.Satellite.Satellite	19	rs35452803	single	+	AG
chrY	11943878	T	n	CC	0	187	BSR/Beta.Satellite.Satellite	19	rs35452803	single	+	AG
chrY	11943917	G	n	CC	7.9736e-255	156	BSR/Beta.Satellite.Satellite	3	rs35452803	single	+	AG
chrY	11943920	A	n	TT	5.8205e-313	157	BSR/Beta.Satellite.Satellite	3	rs35452803	single	+	AG
chrY	11943952	T	n	CC	1.5528e-112	231	BSR/Beta.Satellite.Satellite	32	rs35452803	single	+	AG
chrY	11943991	A	n	GG	1.9605e-21	281	BSR/Beta.Satellite.Satellite	11	rs35452803	single	+	AG
chrY	11944002	A	n	TT	6.962e-61	60	BSR/Beta.Satellite.Satellite	4	rs35452803	single	+	AG
chrY	11944006	C	n	AA	1.6594e-34	34	BSR/Beta.Satellite.Satellite	4	rs35452803	single	+	AG
chrY	11944016	T	n	CC	0.020969	29	BSR/Beta.Satellite.Satellite	10	rs35452803	single	+	AG
chrY	11944084	T	n	CC	3.791e-104	94	BSR/Beta.Satellite.Satellite	21	rs35452803	single	+	AG
chrY	11944105	C	n	GG	1.2496e-24	25	BSR/Beta.Satellite.Satellite	5	rs71297009	in-del	+	lengthTooLong
chrY	11944110	T	n	CC	1.0168e-40	26	BSR/Beta.Satellite.Satellite	5	rs71297009	in-del	+	lengthTooLong
chrY	11944225	A	n	CC	0.048541	5	BSR/Beta.Satellite.Satellite	85	rs71297009	in-del	+	lengthTooLong
chrY	11944310	T	n	AA	6.645e-38	32	BSR/Beta.Satellite.Satellite	18	rs71297009	in-del	+	lengthTooLong
chrY	11944328	G	n	CC	3.9646e-55	45	BSR/Beta.Satellite.Satellite	18	rs71297009	in-del	+	lengthTooLong
chrY	11944442	A	n	TT	8.4928e-138	70	BSR/Beta.Satellite.Satellite	15	rs71297009	in-del	+	lengthTooLong
chrY	11944457	T	n	CC	1.954e-142	82	BSR/Beta.Satellite.Satellite	15	rs71297009	in-del	+	lengthTooLong
chrY	11944492	T	n	GG	1.0271e-225	137	BSR/Beta.Satellite.Satellite	35	rs71297009	in-del	+	lengthTooLong
chrY	11944548	A	n	TT	3.0044e-25	119	BSR/Beta.Satellite.Satellite	22	rs71297009	in-del	+	lengthTooLong
chrY	11944570	A	n	GG	0	417	BSR/Beta.Satellite.Satellite	22	rs71297009	in-del	+	lengthTooLong
chrY	11944621	A	n	CC	0	163	BSR/Beta.Satellite.Satellite	5	rs71297009	in-del	+	lengthTooLong
chrY	11944626	C	n	GG	4.7061e-276	129	BSR/Beta.Satellite.Satellite	5	rs71297009	in-del	+	lengthTooLong
chrY	11944639	T	n	GG	1.1187e-70	49	BSR/Beta.Satellite.Satellite	13	rs71297009	in-del	+	lengthTooLong
chrY	11944726	A	n	GG	4.3547e-105	67	BSR/Beta.Satellite.Satellite	4	rs71297009	in-del	+	lengthTooLong
chrY	11944730	A	n	CC	1.8534e-175	70	BSR/Beta.Satellite.Satellite	4	rs71297009	in-del	+	lengthTooLong
chrY	11944840	T	n	GG	0	268	BSR/Beta.Satellite.Satellite	110	rs71297009	in-del	+	lengthTooLong
chrY	11944954	G	n	CC	7.734e-133	237	BSR/Beta.Satellite.Satellite	86	rs71297009	in-del	+	lengthTooLong
chrY	11945040	G	n	CC	7.4036e-66	42	BSR/Beta.Satellite.Satellite	86	rs71297009	in-del	+	lengthTooLong
chrY	11945333	T	n	AA	0.0010938	57	BSR/Beta.Satellite.Satellite	44	rs71297009	in-del	+	lengthTooLong
chrY	11945377	A	n	TT	7.6736e-246	255	BSR/Beta.Satellite.Satellite	40	rs71297009	in-del	+	lengthTooLong
chrY	11945417	A	n	GG	0	4806	BSR/Beta.Satellite.Satellite	40	rs71297009	in-del	+	lengthTooLong
chrY	11945457	A	n	CC	0	1304	BSR/Beta.Satellite.Satellite	21	rs71297009	in-del	+	lengthTooLong
chrY	11945478	A	n	TT	0	438	BSR/Beta.Satellite.Satellite	21	rs71297009	in-del	+	lengthTooLong
chrY	11945578	C	n	AA	1.5236e-161	321	BSR/Beta.Satellite.Satellite	100	-	-	-	-
chrY	11945767	A	n	GG	7.9432e-33	90	BSR/Beta.Satellite.Satellite	37	rs71230226	single	-	CT
chrY	11945804	G	n	AA	9.987e-29	47	BSR/Beta.Satellite.Satellite	5	-	-	-	-
chrY	11945809	A	n	TT	3.1932e-35	47	BSR/Beta.Satellite.Satellite	5	-	-	-	-
chrY	11945816	A	n	CC	1.9659e-09	50	BSR/Beta.Satellite.Satellite	7	-	-	-	-
chrY	11946003	A	n	TT	7.1781e-195	111	BSR/Beta.Satellite.Satellite	1	rs62612968	single	+	AT
chrY	11946004	A	n	CC	1.0407e-192	106	BSR/Beta.Satellite.Satellite	1	rs62612969	single	+	AC
chrY	11946018	A	n	GG	1.6899e-68	95	BSR/Beta.Satellite.Satellite	14	-	-	-	-
chrY	11946047	C	n	AA	0	379	BSR/Beta.Satellite.Satellite	29	rs62612970	single	+	AC
chrY	11946092	C	n	AA	1.8995e-227	141	BSR/Beta.Satellite.Satellite	10	-	-	-	-
chrY	11946102	T	n	AA	3.907e-31	83	BSR/Beta.Satellite.Satellite	10	-	-	-	-
chrY	11946154	A	n	GG	6.243e-08	31	BSR/Beta.Satellite.Satellite	52	-	-	-	-
chrY	11946242	T	n	CC	9.9511e-28	35	BSR/Beta.Satellite.Satellite	14	-	-	-	-
chrY	11946256	C	n	GG	1.1785e-18	34	BSR/Beta.Satellite.Satellite	14	-	-	-	-
chrY	11946302	T	n	CC	0	490	BSR/Beta.Satellite.Satellite	35	-	-	-	-
chrY	11946337	G	n	CC	0	367	BSR/Beta.Satellite.Satellite	10	rs62612973	single	+	CG
chrY	11946347	G	n	AA	0	366	BSR/Beta.Satellite.Satellite	10	rs62612975	single	+	AG
chrY	11946544	T	n	GG	0.00010775	66	BSR/Beta.Satellite.Satellite	12	-	-	-	-
chrY	11946556	G	n	AA	1.0849e-64	50	BSR/Beta.Satellite.Satellite	12	-	-	-	-
chrY	11946611	A	n	GG	0	244	BSR/Beta.Satellite.Satellite	55	rs62612976	single	+	AG
chrY	11946742	T	n	CC	4.9228e-58	33	BSR/Beta.Satellite.Satellite	100	rs62612978	single	+	CT
chrY	11946842	A	n	TT	2.2602e-06	41	BSR/Beta.Satellite.Satellite	27	-	-	-	-
chrY	11946869	A	n	TT	0.027425	4	BSR/Beta.Satellite.Satellite	27	-	-	-	-
chrY	11947283	C	n	GG	1.7814e-125	230	-	3	-	-	-	-
chrY	11947286	T	n	CC	1.9e-186	494	-	3	-	-	-	-
chrY	11947414	G	n	CC	1.4822e-71	88	-	16	-	-	-	-
chrY	11947430	A	n	GG	4.4516e-52	41	-	16	-	-	-	-
chrY	11947634	T	n	CC	2.4929e-60	84	-	3	-	-	-	-
chrY	11947637	T	n	GG	5.6016e-71	90	-	3	-	-	-	-
chrY	11947724	G	n	CC	0	773	C-rich.Low_complexity.Low_complexity	30	-	-	-	-
chrY	11947754	A	n	CC	4.3542e-34	111	C-rich.Low_complexity.Low_complexity	30	-	-	-	-
chrY	11947804	T	n	GG	2.0294e-234	808	-	45	-	-	-	-
chrY	11947849	T	n	CC	0	197	-	25	rs73618454	single	+	CT
chrY	11947874	T	n	CC	1.1545e-96	134	-	25	-	-	-	-
chrY	11947905	G	n	CC	2.3962e-309	548	LSAU.Satellite.Satellite	31	-	-	-	-
chrY	11948266	A	n	GG	2.5344e-306	588	-	39	-	-	-	-
chrY	11948305	G	n	CC	5.3843e-17	233	-	39	rs36173597	single	+	CT
chrY	11948384	G	n	CC	2.4674e-54	791	-	44	-	-	-	-
chrY	11948428	A	n	GG	1.8246e-76	130	-	24	-	-	-	-
chrY	11948452	G	n	CC	5.1002e-69	128	-	24	-	-	-	-
chrY	11948562	T	n	GG	1.3633e-285	426	-	38	-	-	-	-
chrY	11948600	A	n	CC	8.9859e-152	324	-	20	-	-	-	-
chrY	11948620	A	n	GG	8.4727e-104	149	-	20	-	-	-	-
chrY	11948932	T	n	GG	8.0029e-32	457	-	59	-	-	-	-
chrY	11948991	T	n	CC	3.9032e-76	193	-	59	-	-	-	-
chrY	11949068	A	n	CC	1.4344e-109	196	-	8	-	-	-	-
chrY	11949076	T	n	CC	9.3231e-164	260	-	8	-	-	-	-
chrY	11949233	T	n	CC	2.5665e-30	117	-	66	-	-	-	-
chrY	11949299	A	n	GG	1.3049e-127	454	-	56	-	-	-	-
chrY	11949355	T	n	GG	0	285	-	11	-	-	-	-
chrY	11949366	T	n	CC	2.2077e-40	239	-	11	-	-	-	-
chrY	11949556	T	n	GG	2.0785e-74	546	LSAU.Satellite.Satellite	78	-	-	-	-
chrY	11949634	A	n	CC	1.1081e-12	58	LSAU.Satellite.Satellite	63	-	-	-	-
chrY	11949697	T	n	GG	1.2105e-33	171	LSAU.Satellite.Satellite	36	-	-	-	-
chrY	11949733	C	n	GG	0	610	LSAU.Satellite.Satellite	32	-	-	-	-
chrY	11949765	A	n	CC	2.0432e-28	174	LSAU.Satellite.Satellite	32	rs36161448	in-del	-	-C
chrY	11949803	C	n	AA	1.221e-312	390	LSAU.Satellite.Satellite	38	rs36172865	single	-	AT
chrY	11949886	A	n	CC	1.673e-191	303	LSAU.Satellite.Satellite	19	-	-	-	-
chrY	11949905	A	n	CC	3.7717e-143	275	LSAU.Satellite.Satellite	7	-	-	-	-
chrY	11949912	T	n	GG	1.3691e-216	567	LSAU.Satellite.Satellite	7	-	-	-	-
chrY	11949953	T	n	GG	7.8501e-288	442	LSAU.Satellite.Satellite	41	-	-	-	-
chrY	11950096	T	n	AA	2.6023e-104	67	BSR/Beta.Satellite.Satellite	143	-	-	-	-
chrY	11951906	T	n	CC	0.21364	12	-	164	-	-	-	-
chrY	11952070	G	n	CC	0.042375	2	-	164	-	-	-	-
chrY	11956914	C	n	TT	0.0090931	7	MIRb.SINE.MIR	4844	-	-	-	-
chrY	11963470	A	n	GG	3.9828e-08	8	(TA)n.Simple_repeat.Simple_repeat	3821	rs62604900	single	+	AG
chrY	11967291	A	n	GG	0.0059278	4	-	3821	rs73618466	single	+	AG
chrY	11973411	C	n	TT	0.0027835	2	L1M4c.LINE.L1	543	rs62604928	single	+	CT
chrY	11973954	A	n	TT	2.2403e-06	11	L1M3.LINE.L1	543	-	-	-	-
chrY	11977093	A	n	GG	0.00033205	4	L1PA6.LINE.L1	342	-	-	-	-
chrY	11977435	C	n	AA	1.2222e-05	3	L1PA6.LINE.L1	342	-	-	-	-
chrY	11979082	T	n	CC	7.74e-06	5	L1PA6.LINE.L1	1647	rs62604931	single	+	CT
chrY	11981514	T	n	CC	0.00061094	7	MLT2A2.LTR.ERVL	2032	-	-	-	-
chrY	11983546	C	n	TT	7.6178e-07	17	AluY.SINE.Alu	1391	rs72607972	single	+	CT
chrY	11984937	A	n	GG	2.4092e-19	15	-	583	-	-	-	-
chrY	11985520	A	n	CC	2.7254e-05	3	LTR16A1.LTR.ERVL	583	rs72607974	single	+	AC
chrY	12011565	T	n	GG	5.5491e-07	17	-	1403	-	-	-	-
chrY	12012968	C	n	TT	0.0014969	4	-	1403	-	-	-	-
chrY	12027253	A	n	CC	2.3649e-10	16	AluSx.SINE.Alu	14285	-	-	-	-
chrY	12046978	A	n	GG	2.2924e-17	37	AluJo.SINE.Alu	5239	rs62603882	single	+	AG
chrY	12052217	T	n	CC	4.4177e-37	14	(CCCTG)n.Simple_repeat.Simple_repeat	4805	-	-	-	-
chrY	12057022	T	n	CC	0.0065154	2	(CCCTG)n.Simple_repeat.Simple_repeat	3514	rs67063010	single	+	CT
chrY	12060536	T	n	CC	0.0078873	2	(AAATG)n.Simple_repeat.Simple_repeat	3386	-	-	-	-
chrY	12063922	C	n	TT	0.0038871	16	-	3386	-	-	-	-
chrY	12067549	C	n	TT	5.9944e-104	47	AluY.SINE.Alu	3627	-	-	-	-
chrY	12075321	T	n	CC	1.6936e-14	8	-	109	-	-	-	-
chrY	12075430	T	n	CC	2.0815e-06	22	-	109	-	-	-	-
chrY	12094694	T	n	CC	7.7953e-06	13	-	812	-	-	-	-
chrY	12095506	C	n	TT	0.010053	13	MER4D1.LTR.ERV1	524	-	-	-	-
chrY	12096030	G	n	TT	0.00069084	16	-	524	-	-	-	-
chrY	12096744	G	n	CC	1.2021e-10	15	-	714	rs4117122	single	+	CG
chrY	12101544	A	n	CC	3.6011e-07	8	L1MB4.LINE.L1	1785	-	-	-	-
chrY	12103329	A	n	CC	3.0516e-31	46	HSATII.Satellite.Satellite	706	-	-	-	-
chrY	12104035	T	n	CC	1.3695e-11	10	HSATII.Satellite.Satellite	706	-	-	-	-
chrY	12107788	A	n	TT	4.2474e-14	8	(GAATG)n.Satellite.Satellite	1	-	-	-	-
chrY	12107789	A	n	GG	1.2865e-14	8	(GAATG)n.Satellite.Satellite	1	-	-	-	-
chrY	12108741	C	n	AA	7.104e-68	57	(GAATG)n.Satellite.Satellite	167	rs62641821	single	+	AC
chrY	12108908	C	n	GG	3.0489e-12	40	(GAATG)n.Satellite.Satellite	167	-	-	-	-
chrY	12109698	C	n	TT	2.2487e-99	80	(GAATG)n.Satellite.Satellite	10	-	-	-	-
chrY	12109708	C	n	TT	6.0926e-18	18	(GAATG)n.Satellite.Satellite	2	-	-	-	-
chrY	12109710	T	n	GG	3.4478e-05	14	(GAATG)n.Satellite.Satellite	2	-	-	-	-
chrY	12109830	A	n	GG	6.0132e-06	9	(GAATG)n.Satellite.Satellite	4	-	-	-	-
chrY	12109834	A	n	GG	9.0753e-12	9	(GAATG)n.Satellite.Satellite	4	-	-	-	-
chrY	12110595	G	n	AA	5.5933e-289	220	(GAATG)n.Satellite.Satellite	396	-	-	-	-
chrY	12110991	G	n	TT	1.9947e-34	67	(GAATG)n.Satellite.Satellite	10	-	-	-	-
chrY	12111001	A	n	CC	1.3763e-302	226	(GAATG)n.Satellite.Satellite	10	-	-	-	-
chrY	12111117	A	n	GG	4.3107e-49	79	(GAATG)n.Satellite.Satellite	116	-	-	-	-
chrY	12111661	C	n	GG	0.039831	8	(GAATG)n.Satellite.Satellite	544	-	-	-	-
chrY	12115615	T	n	GG	2.9031e-87	45	(GAATG)n.Satellite.Satellite	830	-	-	-	-
chrY	12116445	A	n	GG	9.1823e-11	18	(GAATG)n.Satellite.Satellite	142	-	-	-	-
chrY	12116587	A	n	CC	0.014291	16	(GAATG)n.Satellite.Satellite	2	-	-	-	-
chrY	12116589	G	n	CC	9.2068e-06	17	(GAATG)n.Satellite.Satellite	2	-	-	-	-
chrY	12116659	A	n	GG	1.2568e-14	6	(GAATG)n.Satellite.Satellite	70	rs35859391	single	+	AG
chrY	12116778	C	n	TT	0.013706	4	(GAATG)n.Satellite.Satellite	1	-	-	-	-
chrY	12116779	A	n	GG	0.093472	4	(GAATG)n.Satellite.Satellite	1	-	-	-	-
chrY	12116781	C	n	AA	3.7061e-05	3	(GAATG)n.Satellite.Satellite	2	-	-	-	-
chrY	12117028	C	n	TT	1.0876e-14	18	(GAATG)n.Satellite.Satellite	247	-	-	-	-
chrY	12118039	A	n	TT	5.8181e-08	6	(GAATG)n.Satellite.Satellite	247	-	-	-	-
chrY	12118286	A	n	GG	1.2747e-251	147	(GAATG)n.Satellite.Satellite	247	-	-	-	-
chrY	12118824	T	n	AA	2.5356e-263	498	(GAATG)n.Satellite.Satellite	8	-	-	-	-
chrY	12118832	A	n	TT	4.8906e-207	464	(GAATG)n.Satellite.Satellite	8	-	-	-	-
chrY	12118856	C	n	GG	2.4093e-09	48	(GAATG)n.Satellite.Satellite	24	-	-	-	-
chrY	12119258	A	n	GG	8.0853e-171	206	(GAATG)n.Satellite.Satellite	92	-	-	-	-
chrY	12119350	T	n	GG	0	287	(GAATG)n.Satellite.Satellite	4	-	-	-	-
chrY	12119354	T	n	AA	0	236	(GAATG)n.Satellite.Satellite	4	-	-	-	-
chrY	12119363	A	n	GG	0.0066306	58	(GAATG)n.Satellite.Satellite	9	-	-	-	-
chrY	12120680	C	n	GG	0.0050085	15	(GAATG)n.Satellite.Satellite	1317	-	-	-	-
chrY	12122032	A	n	GG	0	236	(GAATG)n.Satellite.Satellite	448	-	-	-	-
chrY	12122480	A	n	GG	3.0644e-21	41	(GAATG)n.Satellite.Satellite	448	-	-	-	-
chrY	12124272	A	n	GG	1.1589e-07	17	(GAATG)n.Satellite.Satellite	116	-	-	-	-
chrY	12124388	C	n	GG	4.0944e-10	59	(GAATG)n.Satellite.Satellite	116	-	-	-	-
chrY	12125108	A	n	GG	5.7805e-64	49	(GAATG)n.Satellite.Satellite	720	-	-	-	-
chrY	12126080	G	n	AA	4.6909e-10	30	(GAATG)n.Satellite.Satellite	972	-	-	-	-
chrY	12127352	G	n	AA	3.2189e-70	55	(GAATG)n.Satellite.Satellite	5	-	-	-	-
chrY	12127357	A	n	GG	3.8752e-82	57	(GAATG)n.Satellite.Satellite	5	-	-	-	-
chrY	12128052	G	n	CC	4.108e-59	81	(GAATG)n.Satellite.Satellite	16	-	-	-	-
chrY	12128068	A	n	GG	2.4395e-75	72	(GAATG)n.Satellite.Satellite	16	-	-	-	-
chrY	12129205	A	n	GG	4.7507e-36	91	(GAATG)n.Satellite.Satellite	6	-	-	-	-
chrY	12129211	T	n	GG	0.0018316	56	(GAATG)n.Satellite.Satellite	6	-	-	-	-
chrY	12129462	C	n	AA	0.039762	6	(GAATG)n.Satellite.Satellite	20	-	-	-	-
chrY	12129482	G	n	CC	0	198	(GAATG)n.Satellite.Satellite	20	-	-	-	-
chrY	12129581	C	n	GG	9.9756e-165	111	(GAATG)n.Satellite.Satellite	99	-	-	-	-
chrY	12130193	C	n	GG	4.5135e-05	92	(GAATG)n.Satellite.Satellite	5	-	-	-	-
chrY	12130198	C	n	GG	1.191e-15	83	(GAATG)n.Satellite.Satellite	5	-	-	-	-
chrY	12130441	A	n	TT	0.0059613	6	(GAATG)n.Satellite.Satellite	243	-	-	-	-
chrY	12130957	C	n	TT	0.00034445	22	(GAATG)n.Satellite.Satellite	370	-	-	-	-
chrY	12131327	C	n	AA	0.010912	2	(GAATG)n.Satellite.Satellite	34	-	-	-	-
chrY	12131361	A	n	TT	2.1233e-05	7	(GAATG)n.Satellite.Satellite	29	-	-	-	-
chrY	12131390	T	n	GG	4.2011e-14	13	(GAATG)n.Satellite.Satellite	29	rs62602563	single	+	GT
chrY	12131787	A	n	GG	1.9515e-259	114	(GAATG)n.Satellite.Satellite	397	-	-	-	-
chrY	12133214	G	n	AA	2.6554e-07	26	(GAATG)n.Satellite.Satellite	771	-	-	-	-
chrY	12133985	C	n	AA	9.9166e-65	48	(GAATG)n.Satellite.Satellite	169	-	-	-	-
chrY	12134154	C	n	AA	0.01257	18	(GAATG)n.Satellite.Satellite	144	-	-	-	-
chrY	12134298	G	n	AA	1.2192e-73	39	-	144	-	-	-	-
chrY	12134802	T	n	GG	0.00089053	20	(GAATG)n.Satellite.Satellite	504	-	-	-	-
chrY	12135707	A	n	GG	8.0912e-37	80	(GAATG)n.Satellite.Satellite	124	-	-	-	-
chrY	12135831	C	n	GG	0.01422	12	(GAATG)n.Satellite.Satellite	124	-	-	-	-
chrY	12136466	T	n	CC	3.608e-27	42	(GAATG)n.Satellite.Satellite	635	-	-	-	-
chrY	12137796	T	n	GG	8.0897e-205	433	(GAATG)n.Satellite.Satellite	16	-	-	-	-
chrY	12137812	T	n	GG	3.3829e-118	159	(GAATG)n.Satellite.Satellite	16	-	-	-	-
chrY	12137917	A	n	GG	0.0041418	21	(GAATG)n.Satellite.Satellite	4	-	-	-	-
chrY	12137921	T	n	CC	0.046882	19	(GAATG)n.Satellite.Satellite	4	-	-	-	-
chrY	12138461	A	n	TT	0	289	(GAATG)n.Satellite.Satellite	6	-	-	-	-
chrY	12138467	A	n	GG	0	281	(GAATG)n.Satellite.Satellite	6	-	-	-	-
chrY	12141004	G	n	CC	1.7409e-157	421	(GAATG)n.Satellite.Satellite	1	-	-	-	-
chrY	12141005	A	n	GG	0	315	(GAATG)n.Satellite.Satellite	1	rs62602616	single	+	AG
chrY	12141012	G	n	AA	0.001237	53	(GAATG)n.Satellite.Satellite	7	-	-	-	-
chrY	12141412	A	n	TT	0.027522	4	(GAATG)n.Satellite.Satellite	4	-	-	-	-
chrY	12141416	G	n	AA	0.014515	4	(GAATG)n.Satellite.Satellite	4	-	-	-	-
chrY	12142925	G	n	TT	3.1319e-58	90	(GAATG)n.Satellite.Satellite	1	rs62602629	single	+	GT
chrY	12142926	A	n	CC	3.9326e-68	92	(GAATG)n.Satellite.Satellite	1	rs62602630	single	+	AC
chrY	12142939	A	n	GG	3.8616e-77	121	(GAATG)n.Satellite.Satellite	13	rs62602632	single	+	AG
chrY	12142962	G	n	AA	7.6659e-112	77	(GAATG)n.Satellite.Satellite	4	rs62602634	single	+	AG
chrY	12142966	A	n	GG	2.0963e-114	74	(GAATG)n.Satellite.Satellite	4	rs62602635	single	+	AG
chrY	12142976	A	n	GG	1.6502e-16	64	(GAATG)n.Satellite.Satellite	10	-	-	-	-
chrY	12143782	A	n	GG	1.1038e-11	20	(GAATG)n.Satellite.Satellite	806	-	-	-	-
chrY	12145395	T	n	AA	2.4967e-44	51	(GAATG)n.Satellite.Satellite	3	-	-	-	-
chrY	12145398	A	n	GG	1.1487e-26	51	(GAATG)n.Satellite.Satellite	3	-	-	-	-
chrY	12145718	C	n	GG	7.2761e-150	84	(GAATG)n.Satellite.Satellite	320	-	-	-	-
chrY	12146652	T	n	GG	2.9312e-10	21	(GAATG)n.Satellite.Satellite	310	-	-	-	-
chrY	12146962	C	n	GG	9.1023e-82	134	-	84	-	-	-	-
chrY	12147046	T	n	CC	1.1958e-63	35	(GAATG)n.Satellite.Satellite	5	-	-	-	-
chrY	12147051	G	n	TT	1.3062e-24	43	(GAATG)n.Satellite.Satellite	1	-	-	-	-
chrY	12147052	G	n	TT	1.7289e-19	44	(GAATG)n.Satellite.Satellite	1	-	-	-	-
chrY	12147105	T	n	CC	1.2264e-38	28	(GAATG)n.Satellite.Satellite	6	-	-	-	-
chrY	12147111	G	n	AA	4.0828e-15	27	(GAATG)n.Satellite.Satellite	6	-	-	-	-
chrY	12147127	A	n	GG	2.2783e-07	12	(GAATG)n.Satellite.Satellite	16	-	-	-	-
chrY	12147156	A	n	GG	1.6665e-10	11	(GAATG)n.Satellite.Satellite	29	-	-	-	-
chrY	12147185	T	n	GG	1.5151e-56	30	(GAATG)n.Satellite.Satellite	11	-	-	-	-
chrY	12147196	A	n	CC	1.7922e-83	41	(GAATG)n.Satellite.Satellite	11	-	-	-	-
chrY	12147267	A	n	TT	1.506e-62	31	-	2	-	-	-	-
chrY	12147269	G	n	CC	4.4791e-47	24	-	2	-	-	-	-
chrY	12147278	G	n	TT	1.2752e-19	14	-	9	-	-	-	-
chrY	12147377	A	n	TT	7.0953e-74	35	(GAATG)n.Satellite.Satellite	37	-	-	-	-
chrY	12147414	C	n	TT	2.1799e-12	17	(GAATG)n.Satellite.Satellite	18	-	-	-	-
chrY	12147432	A	n	TT	5.9631e-07	14	(GAATG)n.Satellite.Satellite	18	-	-	-	-
chrY	12147569	A	n	TT	1.0147e-233	95	(GAATG)n.Satellite.Satellite	21	-	-	-	-
chrY	12147590	T	n	GG	1.859e-33	46	(GAATG)n.Satellite.Satellite	10	rs71248433	single	-	CG
chrY	12147600	A	n	GG	5.4619e-33	30	(GAATG)n.Satellite.Satellite	10	-	-	-	-
chrY	12147614	T	n	CC	8.0891e-11	23	(GAATG)n.Satellite.Satellite	12	-	-	-	-
chrY	12147626	A	n	CC	9.9295e-23	25	(GAATG)n.Satellite.Satellite	2	-	-	-	-
chrY	12147628	T	n	AA	1.172e-22	25	(GAATG)n.Satellite.Satellite	2	-	-	-	-
chrY	12147695	A	n	CC	1.4964e-303	117	(GAATG)n.Satellite.Satellite	1	rs62602637	single	+	AC
chrY	12147696	T	n	CC	9.7461e-300	118	(GAATG)n.Satellite.Satellite	1	rs62602638	single	+	CT
chrY	12147739	A	n	TT	7.199e-240	99	(GAATG)n.Satellite.Satellite	7	rs62641177	single	+	AT
chrY	12147746	C	n	GG	1.2266e-285	117	(GAATG)n.Satellite.Satellite	7	rs62641178	single	+	CG
chrY	12147806	T	n	GG	3.2039e-210	95	(GAATG)n.Satellite.Satellite	19	rs62602640	single	+	GT
chrY	12147825	A	n	GG	2.7701e-214	85	(GAATG)n.Satellite.Satellite	19	rs62602641	single	+	AG
chrY	12148139	C	n	TT	8.2216e-55	54	(GAATG)n.Satellite.Satellite	185	-	-	-	-
chrY	12148324	A	n	CC	2.855e-05	5	(GAATG)n.Satellite.Satellite	81	-	-	-	-
chrY	12148405	A	n	GG	1.0086e-16	9	(GAATG)n.Satellite.Satellite	81	-	-	-	-
chrY	12148545	A	n	CC	1.8156e-21	21	(GAATG)n.Satellite.Satellite	19	-	-	-	-
chrY	12148564	A	n	GG	8.5024e-105	52	(GAATG)n.Satellite.Satellite	2	-	-	-	-
chrY	12148566	A	n	GG	6.0875e-32	56	(GAATG)n.Satellite.Satellite	2	-	-	-	-
chrY	12148624	T	n	CC	1.6001e-25	16	-	58	-	-	-	-
chrY	12148705	T	n	GG	5.9329e-27	13	(GAATG)n.Satellite.Satellite	42	-	-	-	-
chrY	12148747	G	n	AA	5.3169e-20	10	-	42	-	-	-	-
chrY	12148824	C	n	GG	3.2342e-168	185	(GAATG)n.Satellite.Satellite	77	-	-	-	-
chrY	12149209	C	n	GG	7.2142e-06	25	(GAATG)n.Satellite.Satellite	1	-	-	-	-
chrY	12149210	A	n	GG	7.9267e-17	28	(GAATG)n.Satellite.Satellite	1	-	-	-	-
chrY	12149213	A	n	TT	2.7239e-20	35	(GAATG)n.Satellite.Satellite	3	-	-	-	-
chrY	12149265	G	n	CC	2.4183e-300	280	(GAATG)n.Satellite.Satellite	10	-	-	-	-
chrY	12149275	C	n	GG	0	262	(GAATG)n.Satellite.Satellite	10	-	-	-	-
chrY	12149367	A	n	CC	5.5339e-191	89	(GAATG)n.Satellite.Satellite	39	-	-	-	-
chrY	12149406	T	n	AA	4.6742e-119	70	(GAATG)n.Satellite.Satellite	4	-	-	-	-
chrY	12149410	T	n	GG	6.9135e-131	65	(GAATG)n.Satellite.Satellite	4	-	-	-	-
chrY	12149446	A	n	CC	0	131	(GAATG)n.Satellite.Satellite	36	-	-	-	-
chrY	12149482	T	n	AA	6.7195e-39	17	(GAATG)n.Satellite.Satellite	36	-	-	-	-
chrY	12149633	T	n	CC	1.3815e-82	82	(GAATG)n.Satellite.Satellite	34	-	-	-	-
chrY	12149667	C	n	GG	1.0214e-147	110	(GAATG)n.Satellite.Satellite	34	-	-	-	-
chrY	12149754	G	n	CC	0	547	(GAATG)n.Satellite.Satellite	87	rs62603779	single	+	CG
chrY	12149915	C	n	GG	0	285	(GAATG)n.Satellite.Satellite	22	rs62603780	single	+	CG
chrY	12149937	G	n	AA	1.532e-116	98	(GAATG)n.Satellite.Satellite	11	rs62603783	single	+	AG
chrY	12149948	G	n	TT	6.324e-06	70	(GAATG)n.Satellite.Satellite	11	rs62603785	single	+	GT
chrY	12150153	G	n	CC	3.5642e-303	150	(GAATG)n.Satellite.Satellite	205	rs62603787	single	+	CG
chrY	12150985	A	n	TT	6.1109e-19	14	-	15	-	-	-	-
chrY	12151000	C	n	TT	9.0024e-18	11	(GAATG)n.Satellite.Satellite	15	-	-	-	-
chrY	12151233	C	n	GG	2.566e-148	90	-	177	-	-	-	-
chrY	12151410	G	n	TT	1.7332e-29	40	(GAATG)n.Satellite.Satellite	8	-	-	-	-
chrY	12151418	T	n	GG	4.4056e-19	44	-	4	-	-	-	-
chrY	12151422	T	n	GG	3.9256e-18	46	-	4	-	-	-	-
chrY	12151660	C	n	TT	5.2401e-06	9	(GAATG)n.Satellite.Satellite	6	-	-	-	-
chrY	12151666	A	n	GG	4.5181e-12	10	(GAATG)n.Satellite.Satellite	6	-	-	-	-
chrY	12151729	C	n	GG	1.1724e-99	56	(GAATG)n.Satellite.Satellite	63	rs62603790	single	+	CG
chrY	12152254	C	n	GG	0.0076535	18	-	69	-	-	-	-
chrY	12152323	G	n	AA	3.7228e-49	24	(GAATG)n.Satellite.Satellite	66	rs62603796	single	+	AG
chrY	12152389	C	n	GG	1.0265e-96	49	(GAATG)n.Satellite.Satellite	50	-	-	-	-
chrY	12152439	G	n	CC	3.4713e-05	13	(GAATG)n.Satellite.Satellite	15	-	-	-	-
chrY	12152454	G	n	CC	1.6547e-13	10	(GAATG)n.Satellite.Satellite	15	-	-	-	-
chrY	12152912	T	n	CC	4.4307e-25	25	(GAATG)n.Satellite.Satellite	7	-	-	-	-
chrY	12152919	T	n	GG	1.4232e-21	23	(GAATG)n.Satellite.Satellite	3	-	-	-	-
chrY	12152922	A	n	TT	6.1796e-14	21	(GAATG)n.Satellite.Satellite	3	-	-	-	-
chrY	12152952	A	n	TT	4.9401e-09	40	(GAATG)n.Satellite.Satellite	30	-	-	-	-
chrY	12153200	A	n	CC	8.3935e-100	62	(GAATG)n.Satellite.Satellite	4	-	-	-	-
chrY	12153204	A	n	GG	5.6039e-145	62	-	4	-	-	-	-
chrY	12153256	G	n	AA	5.2233e-114	68	(GAATG)n.Satellite.Satellite	52	-	-	-	-
chrY	12153426	A	n	TT	2.8303e-24	24	-	7	-	-	-	-
chrY	12153433	C	n	GG	3.1876e-89	46	-	7	-	-	-	-
chrY	12153544	T	n	AA	2.4062e-105	52	(GAATG)n.Satellite.Satellite	69	-	-	-	-
chrY	12153613	T	n	GG	3.6655e-112	108	(GAATG)n.Satellite.Satellite	12	-	-	-	-
chrY	12153625	A	n	TT	0.00077996	57	(GAATG)n.Satellite.Satellite	12	-	-	-	-
chrY	12153811	T	n	CC	0.0067515	2	-	186	rs72607999	single	+	CT
chrY	12154138	T	n	AA	6.8001e-40	20	-	20	-	-	-	-
chrY	12154158	G	n	CC	4.1051e-40	20	-	20	-	-	-	-
chrY	12154515	T	n	GG	9.2852e-12	111	(GAATG)n.Satellite.Satellite	103	-	-	-	-
chrY	12154618	C	n	GG	8.9178e-25	108	(GAATG)n.Satellite.Satellite	51	-	-	-	-
chrY	12154669	A	n	CC	4.3503e-73	99	-	3	-	-	-	-
chrY	12154672	A	n	CC	1.5294e-54	92	-	3	-	-	-	-
chrY	12154726	A	n	CC	0.014032	43	(GAATG)n.Satellite.Satellite	54	-	-	-	-
chrY	12154811	A	n	GG	1.4991e-72	43	(GAATG)n.Satellite.Satellite	3	-	-	-	-
chrY	12154814	G	n	TT	2.4687e-85	43	(GAATG)n.Satellite.Satellite	2	-	-	-	-
chrY	12154816	G	n	CC	0.0031331	46	(GAATG)n.Satellite.Satellite	2	-	-	-	-
chrY	12154918	A	n	CC	2.6497e-267	382	(GAATG)n.Satellite.Satellite	10	rs62603800	single	+	AC
chrY	12154928	G	n	AA	0	423	(GAATG)n.Satellite.Satellite	10	rs62603801	single	+	AG
chrY	12154982	T	n	AA	0	704	-	54	rs62603802	single	+	AT
chrY	12155050	T	n	GG	0	482	(GAATG)n.Satellite.Satellite	68	-	-	-	-
chrY	12155203	G	n	CC	8.9599e-210	109	(GAATG)n.Satellite.Satellite	4	-	-	-	-
chrY	12155207	T	n	AA	1.1681e-214	98	(GAATG)n.Satellite.Satellite	4	-	-	-	-
chrY	12155218	C	n	GG	8.4771e-15	72	(GAATG)n.Satellite.Satellite	11	-	-	-	-
chrY	12163998	C	n	AA	0.050737	2	(GAATG)n.Satellite.Satellite	394	-	-	-	-
chrY	12164392	A	n	CC	4.1645e-08	92	(GAATG)n.Satellite.Satellite	394	-	-	-	-
chrY	12164948	A	n	CC	1.8769e-45	33	(GAATG)n.Satellite.Satellite	342	rs62601097	single	+	AC
chrY	12165290	A	n	CC	8.6484e-44	36	(GAATG)n.Satellite.Satellite	9	-	-	-	-
chrY	12165299	C	n	TT	2.0717e-20	19	(GAATG)n.Satellite.Satellite	9	-	-	-	-
chrY	12166082	G	n	CC	1.9404e-47	236	(GAATG)n.Satellite.Satellite	783	-	-	-	-
chrY	12166866	T	n	GG	3.2702e-31	37	(GAATG)n.Satellite.Satellite	398	-	-	-	-
chrY	12167264	A	n	CC	3.3192e-12	23	(GAATG)n.Satellite.Satellite	398	-	-	-	-
chrY	12167691	T	n	GG	2.7356e-37	18	(GAATG)n.Satellite.Satellite	427	-	-	-	-
chrY	12169714	C	n	GG	2.002e-08	8	(GAATG)n.Satellite.Satellite	8	-	-	-	-
chrY	12169722	A	n	TT	2.2659e-05	5	(GAATG)n.Satellite.Satellite	8	-	-	-	-
chrY	12170459	A	n	TT	2.0324e-26	26	(GAATG)n.Satellite.Satellite	737	-	-	-	-
chrY	12171867	A	n	GG	0.021164	6	-	33	rs71210542	mnp	-	CATTATATTT
chrY	12171900	C	n	TT	9.8873e-06	14	-	33	rs71210542	mnp	-	CATTATATTT
chrY	12172778	A	n	CC	2.7587e-299	533	(GAATG)n.Satellite.Satellite	88	rs71210542	mnp	-	CATTATATTT
chrY	12172866	G	n	TT	6.0697e-58	47	(GAATG)n.Satellite.Satellite	2	rs71210542	mnp	-	CATTATATTT
chrY	12172868	G	n	CC	0.0043567	33	(GAATG)n.Satellite.Satellite	2	rs71210542	mnp	-	CATTATATTT
chrY	12173541	G	n	AA	1.4704e-72	46	(GAATG)n.Satellite.Satellite	673	rs71210542	mnp	-	CATTATATTT
chrY	12174799	C	n	TT	3.6566e-08	16	-	1258	rs71210542	mnp	-	CATTATATTT
chrY	12176738	A	n	GG	7.7952e-91	81	(GAATG)n.Satellite.Satellite	17	rs71210542	mnp	-	CATTATATTT
chrY	12176755	G	n	AA	1.5471e-06	36	(GAATG)n.Satellite.Satellite	17	rs71210542	mnp	-	CATTATATTT
chrY	12176963	G	n	AA	0.030327	5	(GAATG)n.Satellite.Satellite	2	rs71210542	mnp	-	CATTATATTT
chrY	12176965	T	n	GG	0.016882	4	(GAATG)n.Satellite.Satellite	2	rs71210542	mnp	-	CATTATATTT
chrY	12177343	C	n	TT	1.4817e-60	146	(GAATG)n.Satellite.Satellite	13	rs71210542	mnp	-	CATTATATTT
chrY	12177356	C	n	AA	2.0778e-212	96	(GAATG)n.Satellite.Satellite	13	rs71210542	mnp	-	CATTATATTT
chrY	12177472	G	n	TT	0.025568	2	(GAATG)n.Satellite.Satellite	27	rs71210542	mnp	-	CATTATATTT
chrY	12177499	G	n	TT	3.6601e-07	4	(GAATG)n.Satellite.Satellite	1	rs71210542	mnp	-	CATTATATTT
chrY	12177500	T	n	CC	2.4948e-07	4	(GAATG)n.Satellite.Satellite	1	rs71210542	mnp	-	CATTATATTT
chrY	12177812	T	n	CC	3.219e-55	29	(GAATG)n.Satellite.Satellite	312	rs71210542	mnp	-	CATTATATTT
chrY	12179135	T	n	GG	5.6071e-41	52	(GAATG)n.Satellite.Satellite	353	rs71210542	mnp	-	CATTATATTT
chrY	12179488	A	n	TT	5.0619e-122	118	(GAATG)n.Satellite.Satellite	1	rs71210542	mnp	-	CATTATATTT
chrY	12179489	T	n	AA	1.8855e-237	121	(GAATG)n.Satellite.Satellite	1	rs71210542	mnp	-	CATTATATTT
chrY	12179564	T	n	AA	1.3787e-16	45	(GAATG)n.Satellite.Satellite	75	rs71210542	mnp	-	CATTATATTT
chrY	12180486	G	n	TT	0.026592	5	(GAATG)n.Satellite.Satellite	2	rs71210542	mnp	-	CATTATATTT
chrY	12180488	T	n	GG	2.1961e-05	5	(GAATG)n.Satellite.Satellite	2	rs71210542	mnp	-	CATTATATTT
chrY	12182275	G	n	AA	0.00019123	6	(GAATG)n.Satellite.Satellite	1787	rs71210542	mnp	-	CATTATATTT
chrY	12185096	T	n	AA	0.00082635	14	(GAATG)n.Satellite.Satellite	2821	rs71210542	mnp	-	CATTATATTT
chrY	12207895	C	n	GG	3.5143e-21	21	(GAATG)n.Satellite.Satellite	6	-	-	-	-
chrY	12207901	T	n	GG	3.0548e-09	14	(GAATG)n.Satellite.Satellite	6	-	-	-	-
chrY	12310222	A	n	TT	2.534e-08	19	(GAATG)n.Satellite.Satellite	859	-	-	-	-
chrY	12311081	T	n	AA	7.2177e-300	173	(GAATG)n.Satellite.Satellite	2	rs62602333	single	+	AT
chrY	12311083	G	n	TT	0	190	(GAATG)n.Satellite.Satellite	2	rs62602334	single	+	GT
chrY	12311478	T	n	GG	4.3293e-253	150	(GAATG)n.Satellite.Satellite	4	-	-	-	-
chrY	12311482	C	n	GG	1.2202e-182	141	(GAATG)n.Satellite.Satellite	1	-	-	-	-
chrY	12311483	A	n	GG	3.7857e-210	137	(GAATG)n.Satellite.Satellite	1	-	-	-	-
chrY	12312257	A	n	TT	7.1719e-06	55	(GAATG)n.Satellite.Satellite	29	rs62602336	single	+	AT
chrY	12312286	A	n	GG	1.0571e-135	63	(GAATG)n.Satellite.Satellite	29	rs62602338	single	+	AG
chrY	12313124	C	n	AA	0	213	(GAATG)n.Satellite.Satellite	17	-	-	-	-
chrY	12313141	C	n	TT	6.2574e-64	76	(GAATG)n.Satellite.Satellite	17	-	-	-	-
chrY	12313244	T	n	AA	2.3963e-157	77	(GAATG)n.Satellite.Satellite	11	-	-	-	-
chrY	12313255	A	n	TT	3.0993e-76	67	(GAATG)n.Satellite.Satellite	11	-	-	-	-
chrY	12314770	T	n	GG	2.4686e-132	78	(GAATG)n.Satellite.Satellite	131	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12314901	C	n	GG	0.013571	6	(GAATG)n.Satellite.Satellite	131	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12316192	A	n	GG	0.0022629	14	(GAATG)n.Satellite.Satellite	72	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12316264	T	n	AA	6.9051e-193	90	(GAATG)n.Satellite.Satellite	22	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12316286	T	n	CC	0.031599	29	(GAATG)n.Satellite.Satellite	22	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12318129	A	n	GG	1.293e-14	33	(GAATG)n.Satellite.Satellite	259	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12318388	C	n	TT	2.034e-46	59	(GAATG)n.Satellite.Satellite	259	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12319518	G	n	TT	1.5264e-67	223	(GAATG)n.Satellite.Satellite	1	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12319519	A	n	TT	5.7459e-65	227	(GAATG)n.Satellite.Satellite	1	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12319521	A	n	CC	5.7823e-44	235	(GAATG)n.Satellite.Satellite	2	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12320003	C	n	GG	1.3483e-293	190	(GAATG)n.Satellite.Satellite	12	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12320015	A	n	GG	1.5806e-71	132	(GAATG)n.Satellite.Satellite	12	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12320103	T	n	GG	2.1096e-36	75	(GAATG)n.Satellite.Satellite	88	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12320277	C	n	TT	1.6717e-82	55	(GAATG)n.Satellite.Satellite	174	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12321817	G	n	AA	8.8866e-182	194	(GAATG)n.Satellite.Satellite	1334	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12323151	C	n	GG	0	561	(GAATG)n.Satellite.Satellite	339	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12323490	G	n	CC	2.0646e-40	107	(GAATG)n.Satellite.Satellite	12	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12323502	A	n	TT	1.4946e-05	31	(GAATG)n.Satellite.Satellite	12	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12323819	T	n	AA	0.1296	87	(GAATG)n.Satellite.Satellite	317	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12325722	C	n	GG	3.8851e-71	76	(GAATG)n.Satellite.Satellite	1605	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12327327	C	n	GG	0.13775	15	(GAATG)n.Satellite.Satellite	269	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12327596	C	n	GG	0.18962	19	(GAATG)n.Satellite.Satellite	269	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12327910	A	n	TT	3.6567e-14	134	(GAATG)n.Satellite.Satellite	34	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12327944	G	n	AA	1.0471e-171	570	(GAATG)n.Satellite.Satellite	34	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12328252	A	n	TT	6.6395e-07	183	(GAATG)n.Satellite.Satellite	308	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12329127	C	n	GG	0.00033461	20	(GAATG)n.Satellite.Satellite	402	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12329529	C	n	AA	2.2144e-132	91	(GAATG)n.Satellite.Satellite	12	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12329541	A	n	GG	1.9545e-09	32	(GAATG)n.Satellite.Satellite	12	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12330473	A	n	GG	0.003669	4	(GAATG)n.Satellite.Satellite	270	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12330743	A	n	GG	9.8438e-13	24	(GAATG)n.Satellite.Satellite	270	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12332059	G	n	AA	0.003784	28	(GAATG)n.Satellite.Satellite	176	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12332235	A	n	TT	4.8979e-93	65	(GAATG)n.Satellite.Satellite	1	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12332236	T	n	GG	2.5267e-97	64	(GAATG)n.Satellite.Satellite	1	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12332630	A	n	TT	1.0794e-213	143	(GAATG)n.Satellite.Satellite	21	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12332651	G	n	CC	3.1225e-125	114	(GAATG)n.Satellite.Satellite	21	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12332832	T	n	GG	0.022282	2	(GAATG)n.Satellite.Satellite	181	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12333083	C	n	AA	7.0287e-09	8	(GAATG)n.Satellite.Satellite	3	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12333086	T	n	GG	4.787e-23	14	(GAATG)n.Satellite.Satellite	3	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12333705	A	n	GG	7.4411e-09	6	(GAATG)n.Satellite.Satellite	619	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12334417	T	n	AA	4.2276e-08	5	(GAATG)n.Satellite.Satellite	64	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12334481	C	n	GG	6.3871e-07	17	(GAATG)n.Satellite.Satellite	64	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12334698	T	n	AA	3.3454e-12	49	(GAATG)n.Satellite.Satellite	7	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12334705	T	n	GG	0.00028423	38	(GAATG)n.Satellite.Satellite	7	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12335183	A	n	TT	0.016552	8	(GAATG)n.Satellite.Satellite	34	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12335217	A	n	GG	3.604e-31	26	(GAATG)n.Satellite.Satellite	1	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12335218	C	n	AA	1.2996e-16	28	(GAATG)n.Satellite.Satellite	1	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12338253	C	n	AA	0.017957	5	(GAATG)n.Satellite.Satellite	1418	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12339671	T	n	AA	8.7706e-10	29	(GAATG)n.Satellite.Satellite	596	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12340267	T	n	GG	9.7919e-71	153	(GAATG)n.Satellite.Satellite	589	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12340856	T	n	AA	1.0561e-06	56	(GAATG)n.Satellite.Satellite	8	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12340864	A	n	GG	2.7491e-20	37	(GAATG)n.Satellite.Satellite	8	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12341728	A	n	GG	1.1561e-25	30	(GAATG)n.Satellite.Satellite	558	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12342286	T	n	AA	1.048e-76	44	(GAATG)n.Satellite.Satellite	12	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12342298	A	n	GG	9.7722e-27	29	(GAATG)n.Satellite.Satellite	12	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12343028	C	n	AA	5.2214e-80	38	(GAATG)n.Satellite.Satellite	62	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12343090	T	n	CC	2.2439e-26	14	-	5	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12343095	G	n	TT	1.7213e-05	3	-	5	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12343348	A	n	GG	0	430	(GAATG)n.Satellite.Satellite	5	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12343353	C	n	AA	0	385	(GAATG)n.Satellite.Satellite	5	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12344001	G	n	TT	0.0004318	6	(GAATG)n.Satellite.Satellite	7	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12344008	T	n	AA	1.8739e-21	14	(GAATG)n.Satellite.Satellite	2	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12344010	T	n	CC	2.535e-22	28	(GAATG)n.Satellite.Satellite	2	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12344066	A	n	GG	0.0020349	99	(GAATG)n.Satellite.Satellite	56	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12346007	T	n	GG	2.6133e-56	40	(GAATG)n.Satellite.Satellite	25	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12346032	T	n	GG	4.7266e-11	11	(GAATG)n.Satellite.Satellite	5	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12346037	A	n	GG	1.7801e-05	13	(GAATG)n.Satellite.Satellite	5	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12346272	A	n	GG	1.3304e-42	46	(GAATG)n.Satellite.Satellite	235	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12347611	C	n	GG	3.1004e-05	16	(GAATG)n.Satellite.Satellite	1339	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12349535	A	n	GG	2.9917e-11	14	(GAATG)n.Satellite.Satellite	514	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12350049	G	n	CC	1.389e-05	11	-	1	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12350050	G	n	AA	4.8303e-12	11	-	1	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12350051	G	n	AA	1.1084e-09	12	-	1	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12352717	G	n	CC	0	10885	(GAATG)n.Satellite.Satellite	291	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12353008	G	n	AA	8.3574e-08	19	(GAATG)n.Satellite.Satellite	2	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12353010	C	n	GG	4.5371e-11	16	(GAATG)n.Satellite.Satellite	2	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12354598	C	n	GG	2.1554e-21	109	(GAATG)n.Satellite.Satellite	1041	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12355639	A	n	TT	0.00060428	13	(GAATG)n.Satellite.Satellite	475	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12356114	A	n	GG	0.18228	86	(GAATG)n.Satellite.Satellite	475	rs71312640	mnp	-	ACACTGTCCACTGC
chrY	12357704	A	n	GG	5.9715e-70	136	(GAATG)n.Satellite.Satellite	6	-	-	-	-
chrY	12357710	T	n	GG	4.7007e-38	137	(GAATG)n.Satellite.Satellite	6	-	-	-	-
chrY	12358434	C	n	AA	0.00088892	37	-	117	-	-	-	-
chrY	12358551	C	n	GG	3.1818e-23	26	(GAATG)n.Satellite.Satellite	1	-	-	-	-
chrY	12358552	A	n	GG	2.0996e-26	26	(GAATG)n.Satellite.Satellite	1	-	-	-	-
chrY	12359253	G	n	CC	2.1205e-22	51	(GAATG)n.Satellite.Satellite	512	-	-	-	-
chrY	12359765	C	n	GG	8.258e-21	30	(GAATG)n.Satellite.Satellite	1	-	-	-	-
chrY	12359766	T	n	GG	1.5889e-31	29	(GAATG)n.Satellite.Satellite	1	-	-	-	-
chrY	12360474	A	n	GG	1.6949e-49	44	(GAATG)n.Satellite.Satellite	573	-	-	-	-
chrY	12361047	G	n	AA	1.2399e-31	38	(GAATG)n.Satellite.Satellite	328	-	-	-	-
chrY	12361375	A	n	CC	9.8746e-17	170	(GAATG)n.Satellite.Satellite	270	-	-	-	-
chrY	12361645	A	n	GG	0.034378	9	(GAATG)n.Satellite.Satellite	9	rs62617860	single	+	AG
chrY	12361654	A	n	TT	0.012843	12	(GAATG)n.Satellite.Satellite	9	rs62617861	single	+	AT
chrY	12361667	A	n	TT	2.2204e-31	18	(GAATG)n.Satellite.Satellite	13	rs62617862	single	+	AT
chrY	12361694	A	n	TT	0.0037732	8	(GAATG)n.Satellite.Satellite	2	rs62617863	single	+	AT
chrY	12361696	A	n	GG	0.0036325	8	(GAATG)n.Satellite.Satellite	2	rs62617864	single	+	AG
chrY	12362528	C	n	AA	6.0617e-19	28	(GAATG)n.Satellite.Satellite	832	-	-	-	-
chrY	12363717	C	n	GG	2.8587e-38	93	(GAATG)n.Satellite.Satellite	293	-	-	-	-
chrY	12364010	T	n	AA	0	332	(GAATG)n.Satellite.Satellite	12	-	-	-	-
chrY	12364022	C	n	GG	0	332	(GAATG)n.Satellite.Satellite	12	-	-	-	-
chrY	12364337	G	n	TT	9.7714e-11	12	(GAATG)n.Satellite.Satellite	45	rs62617868	single	+	GT
chrY	12364382	T	n	GG	7.0363e-138	70	(GAATG)n.Satellite.Satellite	10	rs62617869	single	+	GT
chrY	12364392	A	n	GG	6.213e-21	27	(GAATG)n.Satellite.Satellite	10	-	-	-	-
chrY	12365352	G	n	AA	0.0056677	24	(GAATG)n.Satellite.Satellite	244	-	-	-	-
chrY	12365596	A	n	TT	0.24696	107	-	244	-	-	-	-
chrY	12366455	G	n	CC	1.3605e-72	75	(GAATG)n.Satellite.Satellite	239	-	-	-	-
chrY	12366694	T	n	AA	8.8644e-115	118	(GAATG)n.Satellite.Satellite	6	-	-	-	-
chrY	12366700	T	n	AA	2.4596e-84	100	(GAATG)n.Satellite.Satellite	6	-	-	-	-
chrY	12367330	A	n	GG	0.0064142	2	(GAATG)n.Satellite.Satellite	365	rs72608002	single	+	AG
chrY	12367695	C	n	GG	1.0483e-57	33	(GAATG)n.Satellite.Satellite	14	-	-	-	-
chrY	12367709	A	n	GG	7.3595e-64	33	(GAATG)n.Satellite.Satellite	14	-	-	-	-
chrY	12368027	T	n	AA	1.9071e-104	183	(GAATG)n.Satellite.Satellite	318	-	-	-	-
chrY	12369983	A	n	GG	0.49069	10	(GAATG)n.Satellite.Satellite	30	-	-	-	-
chrY	12370013	G	n	TT	2.9341e-65	322	(GAATG)n.Satellite.Satellite	5	-	-	-	-
chrY	12370018	A	n	CC	1.7716e-282	509	(GAATG)n.Satellite.Satellite	5	-	-	-	-
chrY	12370078	A	n	CC	2.4946e-116	145	(GAATG)n.Satellite.Satellite	60	-	-	-	-
chrY	12370520	G	n	AA	1.1199e-11	29	(GAATG)n.Satellite.Satellite	442	-	-	-	-
chrY	12371526	T	n	CC	8.8788e-26	12	(GAATG)n.Satellite.Satellite	1	-	-	-	-
chrY	12371527	A	n	TT	3.3829e-23	13	(GAATG)n.Satellite.Satellite	1	-	-	-	-
chrY	12371899	A	n	CC	0.018056	4	-	14	-	-	-	-
chrY	12371913	C	n	TT	0.00035179	18	-	14	-	-	-	-
chrY	12371954	C	n	TT	5.4536e-10	30	(GAATG)n.Satellite.Satellite	41	-	-	-	-
chrY	12372356	C	n	AA	9.2888e-101	59	(GAATG)n.Satellite.Satellite	2	-	-	-	-
chrY	12372358	T	n	GG	2.4373e-94	54	(GAATG)n.Satellite.Satellite	2	-	-	-	-
chrY	12372723	G	n	TT	1.8362e-70	57	(GAATG)n.Satellite.Satellite	3	-	-	-	-
chrY	12372726	A	n	CC	2.3601e-143	104	(GAATG)n.Satellite.Satellite	3	-	-	-	-
chrY	12372729	A	n	GG	6.6981e-298	130	(GAATG)n.Satellite.Satellite	3	-	-	-	-
chrY	12372758	G	n	CC	0.0018799	16	-	29	-	-	-	-
chrY	12373097	T	n	GG	4.9273e-14	19	(GAATG)n.Satellite.Satellite	123	rs62642009	single	+	GT
chrY	12373220	T	n	GG	1.0802e-37	51	(GAATG)n.Satellite.Satellite	2	-	-	-	-
chrY	12373222	A	n	GG	1.2168e-44	50	(GAATG)n.Satellite.Satellite	2	-	-	-	-
chrY	12374854	T	n	CC	0.13934	34	(GAATG)n.Satellite.Satellite	709	-	-	-	-
chrY	12375563	T	n	GG	0.4771	12	(GAATG)n.Satellite.Satellite	215	-	-	-	-
chrY	12375778	C	n	GG	4.1583e-78	209	(GAATG)n.Satellite.Satellite	215	-	-	-	-
chrY	12376308	A	n	GG	1.858e-22	19	(GAATG)n.Satellite.Satellite	530	-	-	-	-
chrY	12376949	A	n	GG	6.916e-47	106	(GAATG)n.Satellite.Satellite	28	-	-	-	-
chrY	12376977	T	n	CC	0	1618	(GAATG)n.Satellite.Satellite	28	rs62617879	single	+	CT
chrY	12377010	T	n	AA	2.7276e-47	192	(GAATG)n.Satellite.Satellite	33	-	-	-	-
chrY	12377238	C	n	AA	1.1388e-09	26	(GAATG)n.Satellite.Satellite	112	-	-	-	-
chrY	12377350	T	n	AA	4.2242e-11	274	(GAATG)n.Satellite.Satellite	3	-	-	-	-
chrY	12377353	G	n	AA	0	275	-	3	-	-	-	-
chrY	12377379	A	n	GG	9.0379e-161	108	(GAATG)n.Satellite.Satellite	2	-	-	-	-
chrY	12377381	T	n	GG	6.0082e-183	104	(GAATG)n.Satellite.Satellite	2	-	-	-	-
chrY	12377386	A	n	GG	1.0011e-166	101	(GAATG)n.Satellite.Satellite	5	-	-	-	-
chrY	12378466	A	n	CC	0.3505	40	-	37	-	-	-	-
chrY	12378503	A	n	CC	1.2679e-10	22	(GAATG)n.Satellite.Satellite	37	-	-	-	-
chrY	12379482	T	n	CC	0	1018	(GAATG)n.Satellite.Satellite	6	-	-	-	-
chrY	12379488	A	n	CC	0	498	(GAATG)n.Satellite.Satellite	1	-	-	-	-
chrY	12379489	T	n	GG	0	427	(GAATG)n.Satellite.Satellite	1	-	-	-	-
chrY	12379801	A	n	TT	3.1494e-89	53	(GAATG)n.Satellite.Satellite	312	-	-	-	-
chrY	12384858	G	n	CC	6.4e-05	5	L1MEe.LINE.L1	5057	-	-	-	-
chrY	12409766	T	n	CC	6.7343e-09	4	L1ME3B.LINE.L1	24908	-	-	-	-
chrY	12444513	C	n	TT	0.29681	5	-	4859	-	-	-	-
chrY	12449372	T	n	CC	0.0058245	2	AT_rich.Low_complexity.Low_complexity	4859	rs13304189	single	+	CT
chrY	12489710	T	n	GG	3.0173e-05	3	L1HS.LINE.L1	16432	-	-	-	-
chrY	12506142	G	n	AA	1.4669e-19	8	MLT1B.LTR.MaLR	9636	-	-	-	-
chrY	12515778	A	n	GG	4.9883e-14	8	AluSq.SINE.Alu	9636	rs9785673	single	+	AG
chrY	12581347	A	n	TT	4.3491e-06	4	-	3	rs7892986	single	+	AT
chrY	12581350	C	n	TT	5.0377e-08	4	-	3	rs7892905	single	+	CT
chrY	12602226	G	n	CC	1.8865e-05	9	-	10364	-	-	-	-
chrY	12612590	A	n	TT	7.8638e-29	12	MER20.DNA.MER1_type	10364	-	-	-	-
chrY	12624633	A	n	TT	0.21745	2	L1PA2.LINE.L1	3625	-	-	-	-
chrY	12628258	C	n	TT	0.0036671	2	-	1795	-	-	-	-
chrY	12630053	T	n	AA	0.025274	2	L1PA4.LINE.L1	1795	-	-	-	-
chrY	12646290	A	n	GG	2.0234e-61	25	L1PA5.LINE.L1	8350	rs12238953	single	+	AG
chrY	12654640	G	n	TT	1.9558e-05	3	-	8350	rs9785657	single	+	GT
chrY	12703383	A	n	GG	2.6807e-24	10	-	11918	rs9786774	single	+	AG
chrY	12715301	A	n	CC	0.086952	2	L1PA6.LINE.L1	11918	rs67762750	single	+	AC
chrY	12736691	A	n	TT	3.3066e-39	16	MER4B.LTR.ERV1	4600	rs725082	single	-	AT
chrY	12741291	A	n	GG	6.3841e-06	3	-	4600	rs7067305	single	+	AG
chrY	12768439	C	n	TT	5.8768e-05	3	L1PA3.LINE.L1	86	-	-	-	-
chrY	12768525	A	n	CC	0.00015273	3	L1PA3.LINE.L1	86	-	-	-	-
chrY	12774474	C	n	AA	2.0239e-08	5	-	5949	-	-	-	-
chrY	12782988	G	n	AA	0.0037066	2	Harlequin.LTR.ERV1	114	-	-	-	-
chrY	12783102	G	n	TT	0.014016	2	Harlequin.LTR.ERV1	114	rs2083586	single	+	GT
chrY	12785582	G	n	AA	1.3882e-14	9	AluSp.SINE.Alu	2480	-	-	-	-
chrY	12795880	C	n	TT	7.3271e-09	4	-	8107	-	-	-	-
chrY	12803987	A	n	CC	0.037963	4	L1PA3.LINE.L1	18	-	-	-	-
chrY	12804005	T	n	CC	1.0418e-08	6	L1PA3.LINE.L1	18	-	-	-	-
chrY	12806375	A	n	GG	2.1313e-16	7	AluJo.SINE.Alu	2370	-	-	-	-
chrY	12810457	T	n	CC	4.2218e-33	42	AluSx.SINE.Alu	2	-	-	-	-
chrY	12810459	G	n	CC	9.0287e-53	42	AluSx.SINE.Alu	2	-	-	-	-
chrY	12810469	G	n	AA	5.8175e-05	36	AluSx.SINE.Alu	10	-	-	-	-
chrY	12821582	G	n	AA	0.41626	6	LTR64.LTR.ERV1	5972	-	-	-	-
chrY	12827554	A	n	GG	0.012581	2	LTR76.LTR.ERV1	5972	rs9786911	single	+	AG
chrY	12835978	A	n	TT	0.017053	2	-	5293	-	-	-	-
chrY	12841271	G	n	AA	9.4043e-11	5	-	5293	rs62617921	single	+	AG
chrY	12876723	T	n	CC	8.5748e-73	34	Harlequin.LTR.ERV1	35452	rs9786462	single	+	CT
chrY	12929049	G	n	AA	7.8484e-09	4	AluJo.SINE.Alu	4814	-	-	-	-
chrY	12933863	A	n	GG	2.1132e-33	17	AluSx.SINE.Alu	4814	rs9786460	single	+	AG
chrY	12942935	A	n	GG	3.5406e-40	15	HERV15.LTR.ERV1	172	rs2740980	single	+	AG
chrY	12943107	G	n	AA	3.4053e-74	28	HERV15.LTR.ERV1	172	rs2740981	single	+	AG
chrY	12945789	A	n	GG	0.0064142	2	HERV15.LTR.ERV1	2682	rs2713251	single	+	AG
chrY	12979418	A	n	CC	0.00015949	5	-	4173	rs2713254	single	+	AC
chrY	12983591	C	n	AA	0.012502	4	SVA.Other.Other	4173	-	-	-	-
chrY	13022011	A	n	GG	2.2521e-13	11	AluJo.SINE.Alu	38420	-	-	-	-
chrY	13095331	C	n	TT	8.0576e-35	16	Harlequin.LTR.ERV1	13484	rs7893102	single	+	CT
chrY	13108815	T	n	CC	5.6261e-17	8	-	13355	rs6530605	single	+	CT
chrY	13122170	A	n	GG	0.025538	2	MER20.DNA.MER1_type	8	-	-	-	-
chrY	13122178	T	n	AA	0.078173	2	MER20.DNA.MER1_type	2	-	-	-	-
chrY	13122180	A	n	GG	0.014905	2	-	2	-	-	-	-
chrY	13134261	C	n	TT	4.5518e-06	3	(CA)n.Simple_repeat.Simple_repeat	12081	rs9786068	single	+	CT
chrY	13189381	C	n	AA	8.6766e-11	5	LTR2.LTR.ERV1	19566	rs13303504	single	+	AC
chrY	13208947	T	n	CC	2.3708e-28	11	MER20.DNA.MER1_type	2092	rs9786706	single	+	CT
chrY	13211039	T	n	CC	2.667e-31	19	AluSx.SINE.Alu	2092	rs7892925	single	+	CT
chrY	13220404	G	n	AA	1.7671e-35	17	HERVFH21.LTR.ERV1	9365	-	-	-	-
chrY	13255689	T	n	CC	7.4472e-06	3	-	35285	-	-	-	-
chrY	13297173	G	n	AA	4.8142e-05	5	(TA)n.Simple_repeat.Simple_repeat	24969	-	-	-	-
chrY	13322142	G	n	AA	5.2574e-09	4	LTR27B.LTR.ERV1	24969	-	-	-	-
chrY	13418214	T	n	CC	0.11666	3	MER41A.LTR.ERV1	24850	-	-	-	-
chrY	13443064	C	n	AA	1.9241e-53	24	AluSx.SINE.Alu	24850	rs34630819	single	+	AC
chrY	13473197	A	n	GG	2.1911e-12	7	L1PA6.LINE.L1	17946	-	-	-	-
chrY	13491143	T	n	CC	1.1422e-53	20	AluSg.SINE.Alu	11608	rs62614585	single	+	CT
chrY	13502751	G	n	AA	2.7198e-42	16	AluSg.SINE.Alu	11608	rs11799152	single	+	AG
chrY	13527975	C	n	TT	9.283e-06	3	-	8947	rs8179021	single	+	CT
chrY	13536922	T	n	GG	0.029797	2	-	8947	rs2032636	single	+	GT
chrY	13550500	A	n	GG	7.2188e-10	73	AluSx.SINE.Alu	6059	-	-	-	-
chrY	13556559	C	n	AA	0.014821	2	-	6059	-	-	-	-
chrY	13562681	G	n	TT	7.8434e-119	77	-	8	-	-	-	-
chrY	13562689	T	n	CC	1.2128e-194	105	-	8	-	-	-	-
chrY	13568271	G	n	AA	2.4576e-32	13	AluSx.SINE.Alu	5582	rs9785956	single	+	AG
chrY	13603792	T	n	CC	6.0542e-67	27	L1P4a.LINE.L1	1	rs9786878	single	+	CT
chrY	13603793	G	n	TT	1.6164e-69	27	L1P4a.LINE.L1	1	rs9785906	single	+	GT
chrY	13620541	G	n	CC	1.6024e-60	24	HERVKC4.LTR.ERVK	16748	rs34083601	single	+	CG
chrY	13638808	A	n	GG	3.8157e-24	10	L1PA15.LINE.L1	12915	rs9786316	single	+	AG
chrY	13651723	T	n	CC	6.2521e-09	4	L1PA5.LINE.L1	1917	rs11799153	single	+	CT
chrY	13653640	C	n	TT	0.0033037	2	L1MDa.LINE.L1	1917	-	-	-	-
chrY	13661710	A	n	GG	4.0252e-14	7	MSTB1.LTR.MaLR	8070	rs35304448	single	+	AG
chrY	13681908	C	n	GG	2.1055e-05	3	L1PA11.LINE.L1	13349	rs11799198	single	+	CG
chrY	13695257	T	n	AA	0.00021748	3	L1PA6.LINE.L1	5	-	-	-	-
chrY	13695262	G	n	CC	0.022345	4	L1PA6.LINE.L1	5	-	-	-	-
chrY	13695273	A	n	GG	0.0060785	4	L1PA6.LINE.L1	11	-	-	-	-
chrY	13709920	T	n	AA	5.4942e-05	3	MER51B-int.LTR.ERV1	2081	-	-	-	-
chrY	13712001	G	n	CC	0.10301	10	AluSq.SINE.Alu	2081	rs2191146	single	-	CG
chrY	13724842	A	n	CC	5.2225e-05	5	L1PA3.LINE.L1	12841	-	-	-	-
chrY	13750154	G	n	AA	7.1919e-06	3	MLT1A0.LTR.MaLR	6445	-	-	-	-
chrY	13756599	A	n	GG	4.1304e-08	6	L1PA3.LINE.L1	6445	-	-	-	-
chrY	13763128	G	n	AA	1.1683e-40	22	AluJb.SINE.Alu	6529	-	-	-	-
chrY	13784593	G	n	CC	2.1766e-42	16	LTR10G.LTR.ERV1	19882	rs1125978	single	-	CG
chrY	13804475	G	n	AA	1.283e-08	6	L1PA2.LINE.L1	28	-	-	-	-
chrY	13804503	G	n	AA	0.10695	2	L1PA2.LINE.L1	28	-	-	-	-
chrY	13833853	A	n	GG	1.9048e-28	11	AluSx.SINE.Alu	29350	-	-	-	-
chrY	13907186	T	n	GG	3.2484e-22	9	Harlequin.LTR.ERV1	42275	-	-	-	-
chrY	13949461	T	n	CC	1.3513e-61	35	AluSp.SINE.Alu	42275	-	-	-	-
chrY	14099735	T	n	GG	3.389e-05	3	-	43793	rs17307070	single	+	GT
chrY	14143528	C	n	TT	3.1559e-11	5	-	9311	-	-	-	-
chrY	14152839	G	n	CC	5.4002e-11	9	L1PA7.LINE.L1	1	-	-	-	-
chrY	14152840	T	n	CC	4.2972e-12	9	L1PA7.LINE.L1	1	-	-	-	-
chrY	14176601	C	n	GG	8.0729e-14	6	LTR25-int.LTR.ERV1	2730	rs28765173	single	+	CG
chrY	14179331	C	n	TT	3.7486e-35	14	AluY.SINE.Alu	2730	-	-	-	-
chrY	14242179	C	n	TT	3.1586e-20	9	THE1B-int.LTR.MaLR	7654	rs9786267	single	+	CT
chrY	14249833	G	n	AA	2.0393e-18	8	HERV9.LTR.ERV1	7654	rs72609674	single	+	AG
chrY	14312808	A	n	GG	1.111e-11	7	L1PA3.LINE.L1	2521	rs2319532	single	+	AG
chrY	14315329	T	n	AA	0.037545	2	L1PA3.LINE.L1	1266	-	-	-	-
chrY	14316595	T	n	CC	0.16329	6	L1PA3.LINE.L1	1266	-	-	-	-
chrY	14327802	G	n	AA	1.5563e-05	3	-	6809	rs9786230	single	+	AG
chrY	14334611	C	n	GG	1.806e-20	12	LTR1.LTR.ERV1	6809	-	-	-	-
chrY	14343874	G	n	AA	2.1678e-05	10	L1PA4.LINE.L1	9263	-	-	-	-
chrY	14372522	G	n	AA	9.9024e-46	18	AluSc.SINE.Alu	11116	-	-	-	-
chrY	14383638	T	n	CC	2.5989e-35	16	AluSc.SINE.Alu	11116	-	-	-	-
chrY	14397382	C	n	AA	8.634e-12	6	L1PA2.LINE.L1	13744	rs7067534	single	+	AC
chrY	14471705	T	n	GG	5.3892e-05	3	L1PA3.LINE.L1	18774	-	-	-	-
chrY	14490479	C	n	TT	0.0079256	2	-	18774	-	-	-	-
chrY	14514531	C	n	AA	9.1984e-06	4	HERV9.LTR.ERV1	3889	rs9786660	single	+	AC
chrY	14518420	A	n	GG	6.096e-61	23	LTR12C.LTR.ERV1	3889	-	-	-	-
chrY	14532858	G	n	AA	0.010739	2	L1PA3.LINE.L1	6	-	-	-	-
chrY	14532864	A	n	GG	0.076966	2	L1PA3.LINE.L1	6	-	-	-	-
chrY	14591823	C	n	GG	0.018321	2	L1PA3.LINE.L1	58959	-	-	-	-
chrY	14692805	A	n	CC	7.6387e-24	10	-	18545	rs4141961	single	+	AC
chrY	14711350	C	n	TT	0.0072499	2	-	18545	-	-	-	-
chrY	14831175	A	n	CC	0.020433	2	L1PA6.LINE.L1	72707	-	-	-	-
chrY	14903882	G	n	TT	1.5233e-34	16	L1PA4.LINE.L1	16231	rs60714711	single	+	GT
chrY	14920113	C	n	TT	0.0089955	2	L1PA7.LINE.L1	16231	-	-	-	-
chrY	14997067	G	n	AA	3.009e-20	8	HERVK11.LTR.ERVK	3157	-	-	-	-
chrY	15000224	T	n	CC	3.1078e-07	18	HERVK11.LTR.ERVK	1716	-	-	-	-
chrY	15001940	T	n	CC	9.9635e-23	10	MER11A.LTR.ERVK	1716	rs2082033	single	+	CT
chrY	15035998	T	n	AA	4.0849e-19	8	AluSx.SINE.Alu	34058	-	-	-	-
chrY	15085960	G	n	AA	0.0032099	2	-	31363	-	-	-	-
chrY	15117323	T	n	GG	1.3897e-16	7	AluSq.SINE.Alu	3987	rs34204299	single	+	GT
chrY	15121310	C	n	TT	4.9816e-09	5	AluSx.SINE.Alu	3987	-	-	-	-
chrY	15229406	T	n	CC	7.9644e-06	3	L1PA8.LINE.L1	7028	rs28819996	single	+	CT
chrY	15236434	T	n	GG	0.01883	2	L1PA6.LINE.L1	7028	-	-	-	-
chrY	15251617	G	n	AA	7.4118e-09	4	MLT1D.LTR.MaLR	9601	rs7067486	single	+	AG
chrY	15261218	A	n	GG	3.195e-25	10	-	9601	rs67643699	single	+	AG
chrY	15283263	G	n	AA	0.013292	2	-	22045	rs9786824	single	+	AG
chrY	15357889	C	n	TT	1.4099e-10	6	THE1C.LTR.MaLR	48985	-	-	-	-
chrY	15406874	A	n	CC	5.4649e-20	49	AluY.SINE.Alu	2	-	-	-	-
chrY	15406876	A	n	CC	2.7435e-20	51	AluY.SINE.Alu	2	-	-	-	-
chrY	15448799	C	n	AA	2.4019e-28	16	AluJb.SINE.Alu	4647	rs4565648	single	+	AC
chrY	15453446	C	n	TT	2.8763e-30	12	-	4647	rs28639779	single	+	CT
chrY	15481041	G	n	TT	1.797e-28	13	L1PA7.LINE.L1	27595	rs28800485	single	+	GT
chrY	15523123	A	n	GG	6.4885e-17	7	-	42082	rs9786685	single	+	AG
chrY	15594317	A	n	TT	0.023411	2	L1PA4.LINE.L1	23	-	-	-	-
chrY	15594340	A	n	GG	0.0059286	2	L1PA4.LINE.L1	23	-	-	-	-
chrY	15622400	T	n	GG	0.48545	5	-	28060	-	-	-	-
chrY	15713667	A	n	GG	1.7231e-30	12	AluSc.SINE.Alu	18632	-	-	-	-
chrY	15732299	G	n	TT	1.4901e-40	17	L1PA10.LINE.L1	18632	rs67476937	single	+	GT
chrY	15770580	G	n	AA	0.0068551	2	L1PA3.LINE.L1	14516	-	-	-	-
chrY	15785096	A	n	GG	4.8799e-52	21	AluSg.SINE.Alu	14516	rs12116396	single	+	AG
chrY	15844087	T	n	GG	1.8611e-52	20	AluJo.SINE.Alu	58991	rs9785876	single	+	GT
chrY	15910178	A	n	GG	6.11e-46	19	AluJo.SINE.Alu	60693	rs9786532	single	+	AG
chrY	15970871	C	n	TT	2.2293e-06	5	-	60693	rs7067281	single	+	CT
chrY	16052793	A	n	CC	0.022416	2	L1PA3.LINE.L1	1	-	-	-	-
chrY	16052794	C	n	TT	0.0072499	2	L1PA3.LINE.L1	1	-	-	-	-
chrY	16052795	T	n	AA	0.027583	2	L1PA3.LINE.L1	1	-	-	-	-
chrY	16104359	G	n	CC	1.3803e-37	16	-	21948	rs9785996	single	+	CG
chrY	16126307	C	n	TT	0.0036671	2	L1PA7.LINE.L1	8211	-	-	-	-
chrY	16134518	C	n	TT	1.7363e-16	7	HERVH.LTR.ERV1	8211	-	-	-	-
chrY	16225644	T	n	CC	4.5599e-17	7	MLT-int.LTR.MaLR	6551	rs1118473	single	-	AG
chrY	16232195	A	n	GG	1.4286e-50	20	L1PA4.LINE.L1	1048	rs9786180	single	+	AG
chrY	16233243	T	n	CC	4.326e-22	9	L1PA4.LINE.L1	1048	rs9786098	single	+	CT
chrY	16244625	A	n	GG	0.008475	2	L1PA8.LINE.L1	11382	-	-	-	-
chrY	16296411	C	n	TT	4.5103e-09	4	L1PA7.LINE.L1	26523	-	-	-	-
chrY	16322934	T	n	CC	1.9906e-70	27	L1PA5.LINE.L1	3531	rs7067497	single	+	CT
chrY	16326465	T	n	CC	7.5573e-31	12	MLT2B2.LTR.ERVL	3531	-	-	-	-
chrY	16336835	C	n	TT	0.003195	2	L1PA4.LINE.L1	10370	-	-	-	-
chrY	16349374	A	n	GG	1.4272e-25	10	L1PA3.LINE.L1	12539	rs9786903	single	+	AG
chrY	16370122	A	n	GG	1.1281e-22	9	-	20748	rs9786171	single	+	AG
chrY	16430022	C	n	AA	2.0274e-27	11	-	21514	-	-	-	-
chrY	16451536	A	n	GG	0.068101	2	AluSq.SINE.Alu	9124	rs66583294	single	+	AG
chrY	16460660	C	n	AA	3.928e-14	6	-	2372	rs9786021	single	+	AC
chrY	16463032	T	n	AA	0.015396	4	L1PA3.LINE.L1	2372	-	-	-	-
chrY	16510563	G	n	AA	0.0032099	2	L1PA2.LINE.L1	904	-	-	-	-
chrY	16511467	A	n	GG	0.012484	2	L1PA2.LINE.L1	603	rs9786913	single	+	AG
chrY	16512070	A	n	GG	8.5764e-06	3	L1PA2.LINE.L1	5	-	-	-	-
chrY	16512075	A	n	CC	0.013464	4	L1PA2.LINE.L1	5	-	-	-	-
chrY	16526921	T	n	GG	1.6638e-16	7	-	9327	rs9786821	single	+	GT
chrY	16536248	A	n	GG	0.0079732	2	-	9327	rs9786582	single	+	AG
chrY	16568144	C	n	GG	1.1518e-10	8	L1PA5.LINE.L1	31896	-	-	-	-
chrY	16618574	C	n	AA	0.0015394	11	AluSq.SINE.Alu	28650	-	-	-	-
chrY	16647224	C	n	TT	0.0037918	2	L1M5.LINE.L1	28650	rs67558859	single	+	CT
chrY	16676796	T	n	CC	0.00019352	3	-	20548	rs9786876	single	+	CT
chrY	16697344	G	n	TT	0.072693	2	HERVFH19.LTR.ERV1	20548	-	-	-	-
chrY	16721667	G	n	AA	4.7732e-05	3	L1P3.LINE.L1	15290	-	-	-	-
chrY	16736957	G	n	AA	5.0159e-09	6	L1PA3.LINE.L1	15290	-	-	-	-
chrY	16758091	G	n	AA	3.5584e-45	20	LTR8A.LTR.ERV1	21134	rs9785659	single	+	AG
chrY	16891128	G	n	AA	1.3239e-50	19	LTR13.LTR.ERVK	25876	rs9786121	single	+	AG
chrY	16917004	T	n	CC	0.0077457	2	L1P3.LINE.L1	892	rs4535945	single	+	CT
chrY	16917896	C	n	TT	0.00010139	5	L1PA4.LINE.L1	892	-	-	-	-
chrY	16920174	G	n	AA	0.0039673	2	L1P3.LINE.L1	2278	-	-	-	-
chrY	16964252	C	n	TT	0.0027835	2	(TTTC)n.Simple_repeat.Simple_repeat	3	-	-	-	-
chrY	16964255	T	n	CC	0.0044234	2	(TTTC)n.Simple_repeat.Simple_repeat	3	-	-	-	-
chrY	17074440	G	n	AA	5.7278e-06	3	AluY.SINE.Alu	46597	-	-	-	-
chrY	17121037	T	n	AA	0.028929	2	AluJb.SINE.Alu	5952	rs67208810	single	+	AT
chrY	17126989	T	n	CC	1.1548e-17	8	AluJb.SINE.Alu	5952	rs9786772	single	+	CT
chrY	17175030	C	n	AA	0.031139	2	-	44959	-	-	-	-
chrY	17219989	T	n	CC	1.1808e-08	12	L1PA4.LINE.L1	44959	-	-	-	-
chrY	17294944	C	n	AA	0.01251	2	-	1	-	-	-	-
chrY	17294945	A	n	CC	0.018329	2	-	1	-	-	-	-
chrY	17374691	T	n	CC	1.3059e-15	7	L1PA7.LINE.L1	6369	rs980893	single	+	CT
chrY	17381060	T	n	GG	0.01883	2	GA-rich.Low_complexity.Low_complexity	6369	rs9786680	single	+	GT
chrY	17395919	A	n	GG	5.2727e-25	11	-	14859	-	-	-	-
chrY	17416629	C	n	AA	2.0681e-19	8	L2.LINE.L2	5007	rs9786283	single	+	AC
chrY	17421636	G	n	CC	3.5928e-05	3	-	5007	-	-	-	-
chrY	17485792	C	n	TT	0.003195	2	L1PA4.LINE.L1	1536	-	-	-	-
chrY	17487328	T	n	GG	0.00072507	4	(ATG)n.Simple_repeat.Simple_repeat	1536	-	-	-	-
chrY	17491980	G	n	AA	4.8872e-13	32	AluSx.SINE.Alu	8	-	-	-	-
chrY	17491988	G	n	AA	0.057217	21	AluSx.SINE.Alu	8	-	-	-	-
chrY	17495507	G	n	TT	0.01459	2	AluSc.SINE.Alu	3519	-	-	-	-
chrY	17529733	C	n	GG	2.3309e-08	4	THE1C.LTR.MaLR	24784	rs9786439	single	+	CG
chrY	17554517	C	n	TT	9.7579e-20	8	AluJo.SINE.Alu	428	rs13304804	single	+	CT
chrY	17554945	T	n	CC	7.8026e-09	4	LTR8.LTR.ERV1	428	rs7892920	single	+	CT
chrY	17564282	T	n	CC	4.7786e-08	4	-	6460	rs9786111	single	+	CT
chrY	17570742	T	n	GG	1.5207e-65	25	L1P3.LINE.L1	6460	rs9786684	single	+	GT
chrY	17594176	A	n	GG	5.7862e-07	6	L1PA3.LINE.L1	27	-	-	-	-
chrY	17594203	A	n	GG	3.091e-39	17	L1PA3.LINE.L1	27	-	-	-	-
chrY	17607802	A	n	GG	0.21361	2	L1PA3.LINE.L1	178	-	-	-	-
chrY	17607980	T	n	CC	0.13125	2	L1PA3.LINE.L1	178	-	-	-	-
chrY	17611665	A	n	GG	0.0055755	8	L1PA3.LINE.L1	3685	-	-	-	-
chrY	17719118	C	n	GG	0.038411	14	L1PA2.LINE.L1	35342	-	-	-	-
chrY	17754460	C	n	AA	1.6314e-51	20	LTR17.LTR.ERV1	35342	-	-	-	-
chrY	17803530	C	n	GG	0.07878	2	CT-rich.Low_complexity.Low_complexity	4184	-	-	-	-
chrY	17807714	A	n	GG	2.3668e-14	7	HERV9.LTR.ERV1	4184	rs67464913	single	+	AG
chrY	17812385	C	n	TT	0.00010352	4	HERV9.LTR.ERV1	4271	-	-	-	-
chrY	17816656	C	n	TT	3.0687e-52	27	AluSc.SINE.Alu	4271	-	-	-	-
chrY	17886891	G	n	AA	0.0033191	2	(GAAA)n.Simple_repeat.Simple_repeat	39896	-	-	-	-
chrY	17926787	C	n	AA	2.2535e-15	7	L1PA10.LINE.L1	14534	rs4568775	single	+	AC
chrY	17941321	C	n	AA	0.03061	2	-	4772	-	-	-	-
chrY	17946093	G	n	AA	0.012859	2	(GAAA)n.Simple_repeat.Simple_repeat	3002	-	-	-	-
chrY	17949095	T	n	CC	1.5418e-30	18	AluY.SINE.Alu	3002	-	-	-	-
chrY	17964836	G	n	AA	3.3192e-21	9	-	5200	-	-	-	-
chrY	17970036	A	n	GG	0.0061727	4	HERV9.LTR.ERV1	8	-	-	-	-
chrY	17970044	T	n	CC	8.0217e-06	3	HERV9.LTR.ERV1	8	-	-	-	-
chrY	18014314	G	n	CC	1.8941e-05	7	(TC)n.Simple_repeat.Simple_repeat	30528	-	-	-	-
chrY	18044842	G	n	CC	2.3785e-11	8	HERV30.LTR.ERV1	30528	-	-	-	-
chrY	18975867	G	n	AA	0.007951	3	(CA)n.Simple_repeat.Simple_repeat	294827	-	-	-	-
chrY	19270694	A	n	GG	9.8053e-43	17	-	5950	rs67053054	single	+	AG
chrY	19276644	G	n	AA	7.504e-06	3	-	5950	-	-	-	-
chrY	19288182	A	n	GG	1.6936e-62	23	LTR14C.LTR.ERVK	9429	rs9786501	single	+	AG
chrY	19297611	G	n	AA	0.0039673	2	L1MC1.LINE.L1	9429	rs67497980	single	+	AG
chrY	19555279	T	n	AA	0.019869	2	(TA)n.Simple_repeat.Simple_repeat	21996	-	-	-	-
chrY	19577275	C	n	TT	4.0744e-06	3	-	21996	rs9786197	single	+	CT
chrY	19612249	C	n	AA	0.027844	5	-	6	rs7893092	single	+	AC
chrY	19612255	T	n	GG	0.034	5	-	6	rs7893001	single	+	GT
chrY	19612846	A	n	GG	1.2849e-38	73	AluSx.SINE.Alu	15	rs6530600	single	+	AG
chrY	19612861	A	n	GG	5.1496e-36	62	AluSx.SINE.Alu	15	rs1136210	single	-	CT
chrY	19613710	G	n	AA	0.49059	17	-	280	rs10465459	single	+	AG
chrY	19613990	A	n	CC	3.8246e-26	119	-	176	-	-	-	-
chrY	19614166	C	n	GG	1.0914e-06	120	-	176	rs4554659	single	+	CG
chrY	19631459	A	n	CC	0.069517	9	L1PA2.LINE.L1	17293	-	-	-	-
chrY	19662740	G	n	AA	1.743e-15	8	HERVIP10FH.LTR.ERV1	19515	-	-	-	-
chrY	19682255	G	n	CC	0.027975	2	L1ME1.LINE.L1	19515	rs7067491	single	+	CG
chrY	19722416	A	n	GG	9.0396e-09	4	HERV9.LTR.ERV1	12774	rs9786254	single	+	AG
chrY	19735190	C	n	TT	0.0036671	2	L1PA3.LINE.L1	12774	-	-	-	-
chrY	19755549	C	n	GG	2.9957e-16	7	HERV9.LTR.ERV1	5030	-	-	-	-
chrY	19760579	C	n	TT	4.8067e-31	13	HERV9.LTR.ERV1	5030	-	-	-	-
chrY	19773969	A	n	GG	2.3045e-25	11	AluSq.SINE.Alu	13390	-	-	-	-
chrY	19808907	G	n	TT	0.014016	2	L1P1.LINE.L1	9033	-	-	-	-
chrY	19817940	A	n	GG	2.0016e-05	4	(TGGA)n.Simple_repeat.Simple_repeat	9033	rs73626933	single	+	AG
chrY	19869093	C	n	GG	6.1639e-07	4	L1P2.LINE.L1	38138	rs4481791	single	+	CG
chrY	19907231	T	n	AA	6.4826e-11	5	L1PA4.LINE.L1	7567	rs9785773	single	+	AT
chrY	19914798	C	n	TT	6.7462e-06	3	MER9.LTR.ERVK	7567	-	-	-	-
chrY	19943783	C	n	GG	3.5263e-35	14	HUERS-P3.LTR.ERV1	17757	-	-	-	-
chrY	19961540	A	n	GG	0.0057332	4	L1PA4.LINE.L1	17757	-	-	-	-
chrY	19987644	C	n	TT	0.0027835	2	L1M.LINE.L1	26104	rs9786101	single	+	CT
chrY	20020798	T	n	CC	0.005157	2	L1PREC2.LINE.L1	19653	-	-	-	-
chrY	20040451	T	n	CC	5.5066e-14	7	HERVH.LTR.ERV1	19653	rs9786508	single	+	CT
chrY	20121063	G	n	TT	0.011829	2	AluSx.SINE.Alu	76835	rs9785684	single	+	GT
chrY	20197898	T	n	CC	0.0064837	2	L1PA7.LINE.L1	22764	-	-	-	-
chrY	20220662	G	n	TT	2.2032e-07	5	AluSg.SINE.Alu	22764	rs7067374	single	+	GT
chrY	20266327	G	n	AA	0.060556	4	L1P2.LINE.L1	22454	-	-	-	-
chrY	20288781	A	n	GG	1.6196e-05	3	L1P.LINE.L1	13696	rs72613048	single	+	AG
chrY	20302477	G	n	CC	4.246e-08	4	-	13696	rs891407	single	+	CG
chrY	20402815	A	n	GG	6.3876e-06	11	L1PA5.LINE.L1	5610	-	-	-	-
chrY	20408425	G	n	AA	0.0032099	2	L1PA7.LINE.L1	14	-	-	-	-
chrY	20408439	T	n	CC	5.6478e-06	3	L1PA7.LINE.L1	14	-	-	-	-
chrY	20433193	G	n	AA	6.8267e-28	13	HERVI.LTR.ERV1	20038	-	-	-	-
chrY	20453231	A	n	GG	9.0762e-52	22	LTR13.LTR.ERVK	4155	rs66510527	single	+	AG
chrY	20457386	A	n	GG	0.019467	7	L1PA4.LINE.L1	3259	-	-	-	-
chrY	20460645	G	n	AA	1.3811e-24	10	L1PA4.LINE.L1	3259	-	-	-	-
chrY	20471563	C	n	AA	2.9894e-15	9	L1PA3.LINE.L1	10918	-	-	-	-
chrY	20614984	G	n	AA	1.1685e-08	4	L1PA4.LINE.L1	1714	-	-	-	-
chrY	20616698	A	n	CC	8.14e-31	12	-	1714	rs34276300	single	+	AC
chrY	20626691	G	n	TT	7.8393e-08	4	AluSg.SINE.Alu	9993	-	-	-	-
chrY	20658832	G	n	AA	3.3853e-21	9	AluY.SINE.Alu	22675	-	-	-	-
chrY	20681507	T	n	GG	9.751e-06	6	LTR12B.LTR.ERV1	6051	-	-	-	-
chrY	20687558	A	n	CC	0.024272	2	LTR12B.LTR.ERV1	25	rs62617674	single	+	AC
chrY	20687583	C	n	TT	0.0037918	2	LTR12B.LTR.ERV1	4	rs71202146	single	-	AG
chrY	20687587	A	n	CC	0.020991	2	LTR12B.LTR.ERV1	4	-	-	-	-
chrY	20688949	A	n	GG	0.0061298	2	LTR12B.LTR.ERV1	160	rs72613059	single	+	AG
chrY	20689109	T	n	AA	1.0135e-13	6	LTR12B.LTR.ERV1	143	rs2690774	single	-	AT
chrY	20689252	A	n	GG	3.4718e-14	10	LTR12B.LTR.ERV1	3	rs2704697	single	+	AG
chrY	20689255	A	n	CC	6.9065e-16	10	LTR12B.LTR.ERV1	3	rs2690773	single	-	GT
chrY	20693119	C	n	GG	1.1557e-20	9	LTR12B.LTR.ERV1	1247	rs13305741	single	+	CG
chrY	20694366	C	n	AA	0.01413	2	LTR12B.LTR.ERV1	10	-	-	-	-
chrY	20694376	G	n	AA	0.0032099	2	LTR12B.LTR.ERV1	10	-	-	-	-
chrY	20694613	C	n	TT	5.9836e-09	4	LTR12B.LTR.ERV1	237	-	-	-	-
chrY	20697018	C	n	AA	1.4024e-05	3	LTR12B.LTR.ERV1	3	rs71248859	mnp	-	GTAAAGGAGTTATATTAAAGGTGTTATG
chrY	20697021	G	n	CC	1.5371e-05	3	LTR12B.LTR.ERV1	3	rs71248859	mnp	-	GTAAAGGAGTTATATTAAAGGTGTTATG
chrY	20698515	G	n	CC	1.3095e-11	6	LTR12B.LTR.ERV1	263	rs9786047	single	+	CG
chrY	20698778	A	n	CC	0.022566	4	LTR12B.LTR.ERV1	263	-	-	-	-
chrY	20699395	T	n	CC	2.4327e-05	11	LTR12B.LTR.ERV1	617	rs2704702	single	+	CT
chrY	20701305	A	n	TT	0.33271	6	LTR12B.LTR.ERV1	11	-	-	-	-
chrY	20701316	T	n	GG	9.8532e-05	5	LTR12B.LTR.ERV1	1	-	-	-	-
chrY	20701317	A	n	CC	0.00075919	5	LTR12B.LTR.ERV1	1	-	-	-	-
chrY	20704264	A	n	GG	0.0059286	2	LTR12B.LTR.ERV1	1322	-	-	-	-
chrY	20705586	G	n	AA	2.66e-18	8	LTR12B.LTR.ERV1	470	rs2704711	single	+	AG
chrY	20706056	A	n	GG	0.021415	2	LTR12B.LTR.ERV1	470	-	-	-	-
chrY	20712477	G	n	TT	0.014016	2	LTR12B.LTR.ERV1	2205	rs71248755	mnp	+	AAGT
chrY	20714682	A	n	GG	1.6623e-11	5	LTR12B.LTR.ERV1	2205	rs71248755	mnp	+	AAGT
chrY	20717446	A	n	TT	0.019012	6	LTR12B.LTR.ERV1	104	-	-	-	-
chrY	20717550	A	n	TT	3.8013e-05	3	LTR12B.LTR.ERV1	5	-	-	-	-
chrY	20717555	G	n	CC	0.00079332	3	LTR12B.LTR.ERV1	5	-	-	-	-
chrY	20718609	G	n	CC	0.00019975	4	LTR12B.LTR.ERV1	122	rs71248874	mnp	+	lengthTooLong
chrY	20718731	T	n	GG	0.0045579	12	LTR12B.LTR.ERV1	122	rs71248874	mnp	+	lengthTooLong
chrY	20720548	G	n	AA	9.7482e-06	3	LTR12B.LTR.ERV1	527	rs71248874	mnp	+	lengthTooLong
chrY	20721075	G	n	AA	0.0070693	2	LTR12B.LTR.ERV1	527	rs71248874	mnp	+	lengthTooLong
chrY	20721889	A	n	GG	0.0036511	8	LTR12B.LTR.ERV1	43	rs71248874	mnp	+	lengthTooLong
chrY	20721932	T	n	AA	0.035523	2	LTR12B.LTR.ERV1	43	rs71248874	mnp	+	lengthTooLong
chrY	20722909	C	n	AA	0.017418	2	LTR12B.LTR.ERV1	2	rs71248874	mnp	+	lengthTooLong
chrY	20722911	T	n	CC	0.0069784	2	LTR12B.LTR.ERV1	2	rs71248874	mnp	+	lengthTooLong
chrY	20729138	T	n	AA	0.00052267	3	LTR12B.LTR.ERV1	6227	rs71248885	mnp	+	lengthTooLong
chrY	20737847	G	n	CC	4.7048e-19	18	LTR12B.LTR.ERV1	8709	rs71303387	mnp	+	lengthTooLong
chrY	20746802	G	n	CC	0.019532	2	LTR12B.LTR.ERV1	1253	rs71248796	mnp	+	GTGTTATTTGTTAG
chrY	20748055	A	n	TT	6.628e-11	5	LTR12B.LTR.ERV1	229	rs71248796	mnp	+	GTGTTATTTGTTAG
chrY	20748284	T	n	CC	3.7044e-06	4	LTR12B.LTR.ERV1	229	rs71248796	mnp	+	GTGTTATTTGTTAG
chrY	20753013	T	n	GG	5.3341e-05	5	LTR12B.LTR.ERV1	50	-	-	-	-
chrY	20753063	T	n	GG	1.2577e-16	7	LTR12B.LTR.ERV1	50	rs56407838	single	+	GT
chrY	20753368	C	n	GG	0.016841	2	LTR12B.LTR.ERV1	305	rs71248758	deletion	+	CAGAGTTTAGTGTTTG
chrY	20755780	T	n	CC	9.1791e-25	10	LTR12B.LTR.ERV1	2412	rs71248758	deletion	+	CAGAGTTTAGTGTTTG
chrY	20758663	T	n	CC	3.0076e-11	5	LTR12D.LTR.ERV1	2	rs71248758	deletion	+	CAGAGTTTAGTGTTTG
chrY	20758665	C	n	TT	1.5593e-11	5	LTR12D.LTR.ERV1	1	rs71248758	deletion	+	CAGAGTTTAGTGTTTG
chrY	20758666	G	n	CC	8.4257e-08	6	LTR12D.LTR.ERV1	1	rs71248758	deletion	+	CAGAGTTTAGTGTTTG
chrY	20758849	G	n	TT	0.029249	2	LTR12D.LTR.ERV1	183	rs71248758	deletion	+	CAGAGTTTAGTGTTTG
chrY	20759231	T	n	CC	1.8467e-05	3	LTR12D.LTR.ERV1	382	rs71248758	deletion	+	CAGAGTTTAGTGTTTG
chrY	20761663	G	n	TT	0.049572	2	LTR12B.LTR.ERV1	2432	rs71248758	deletion	+	CAGAGTTTAGTGTTTG
chrY	20776034	C	n	GG	7.9529e-30	12	LTR12B.LTR.ERV1	2331	rs71248775	mnp	+	lengthTooLong
chrY	20778365	T	n	CC	2.6492e-11	5	LTR12B.LTR.ERV1	21	rs2704689	single	+	CT
chrY	20778386	T	n	GG	0.023187	2	LTR12B.LTR.ERV1	21	rs11799250	single	+	GT
chrY	20778648	T	n	GG	4.7197e-18	8	LTR12B.LTR.ERV1	262	rs2704692	single	+	GT
chrY	20800781	A	n	TT	1.2567e-06	5	LTR12B.LTR.ERV1	4	rs71248879	mnp	+	AGATGTGTCTGATGTGTA
chrY	20800785	C	n	GG	0.0037354	4	LTR12B.LTR.ERV1	4	rs71248879	mnp	+	AGATGTGTCTGATGTGTA
chrY	20800967	C	n	TT	3.9639e-06	3	LTR12B.LTR.ERV1	182	rs71248879	mnp	+	AGATGTGTCTGATGTGTA
chrY	20802019	T	n	CC	4.8457e-06	7	LTR12B.LTR.ERV1	983	rs71248879	mnp	+	AGATGTGTCTGATGTGTA
chrY	20803002	A	n	GG	0.0090105	2	LTR12B.LTR.ERV1	983	rs71248879	mnp	+	AGATGTGTCTGATGTGTA
chrY	20805401	A	n	CC	8.9072e-13	7	LTR12B.LTR.ERV1	154	rs71248879	mnp	+	AGATGTGTCTGATGTGTA
chrY	20805555	A	n	TT	1.2031e-63	24	LTR12B.LTR.ERV1	154	rs71248879	mnp	+	AGATGTGTCTGATGTGTA
chrY	20805747	C	n	GG	2.6369e-08	4	LTR12B.LTR.ERV1	1	rs71248879	mnp	+	AGATGTGTCTGATGTGTA
chrY	20805748	A	n	TT	3.5857e-08	4	LTR12B.LTR.ERV1	1	rs71248879	mnp	+	AGATGTGTCTGATGTGTA
chrY	20812424	T	n	GG	0.033577	2	LTR12B.LTR.ERV1	408	-	-	-	-
chrY	20812832	A	n	CC	0.023054	2	LTR12B.LTR.ERV1	8	-	-	-	-
chrY	20812840	G	n	CC	0.0159	2	LTR12B.LTR.ERV1	8	-	-	-	-
chrY	20820299	T	n	CC	1.1783e-05	3	LTR12B.LTR.ERV1	7459	rs34233180	deletion	-	-G
chrY	20832800	G	n	AA	0.012905	2	LTR12B.LTR.ERV1	7638	rs71248792	mnp	+	CACAGCACTACAGCAT
chrY	20840438	G	n	CC	0.012128	6	LTR12B.LTR.ERV1	1317	rs71250669	mnp	+	ACTTCCTC
chrY	20841755	G	n	CC	2.8454e-25	11	LTR12B.LTR.ERV1	1317	rs71250669	mnp	+	ACTTCCTC
chrY	20847131	T	n	GG	2.5331e-08	4	LTR12B.LTR.ERV1	2498	rs4573472	single	+	AG
chrY	20849629	C	n	AA	3.5042e-06	6	LTR12B.LTR.ERV1	1176	rs4573472	single	+	AG
chrY	20850805	T	n	CC	0.0011658	4	LTR12B.LTR.ERV1	1176	rs4573472	single	+	AG
chrY	20852861	G	n	AA	2.0878e-05	3	LTR12B.LTR.ERV1	1185	rs4573472	single	+	AG
chrY	20854046	A	n	TT	0.019533	2	LTR12B.LTR.ERV1	1185	rs4573472	single	+	AG
chrY	20856246	G	n	CC	1.3497e-05	11	LTR12B.LTR.ERV1	302	-	-	-	-
chrY	20856548	G	n	TT	6.5945e-14	8	LTR12B.LTR.ERV1	302	-	-	-	-
chrY	20866708	A	n	CC	0.098577	2	LTR12B.LTR.ERV1	26	-	-	-	-
chrY	20866734	A	n	CC	0.025073	2	LTR12B.LTR.ERV1	26	-	-	-	-
chrY	20867480	T	n	GG	1.1003e-24	14	LTR12B.LTR.ERV1	130	-	-	-	-
chrY	20867610	C	n	AA	2.5422e-15	7	LTR12B.LTR.ERV1	130	-	-	-	-
chrY	20868046	T	n	GG	0.00053283	4	LTR12B.LTR.ERV1	436	-	-	-	-
chrY	20869867	G	n	TT	0.013559	2	LTR12B.LTR.ERV1	90	-	-	-	-
chrY	20869957	T	n	CC	0.0058598	2	LTR12B.LTR.ERV1	90	rs9786427	single	+	CT
chrY	20870961	G	n	AA	4.861e-06	3	LTR12B.LTR.ERV1	1004	-	-	-	-
chrY	20874315	T	n	CC	6.2742e-20	9	LTR12B.LTR.ERV1	3354	-	-	-	-
chrY	20881024	C	n	GG	1.9548e-05	3	LTR12B.LTR.ERV1	265	-	-	-	-
chrY	20881289	C	n	AA	1.9737e-12	6	LTR12B.LTR.ERV1	265	-	-	-	-
chrY	20883430	G	n	TT	0.015486	4	LTR12B.LTR.ERV1	1481	-	-	-	-
chrY	20884911	A	n	CC	1.5911e-29	26	LTR12B.LTR.ERV1	339	-	-	-	-
chrY	20885250	A	n	CC	0.026955	2	LTR12B.LTR.ERV1	339	-	-	-	-
chrY	20893108	T	n	CC	8.425e-06	3	LTR12B.LTR.ERV1	270	-	-	-	-
chrY	20893378	C	n	TT	7.7656e-44	23	LTR12B.LTR.ERV1	270	-	-	-	-
chrY	20895940	G	n	TT	6.1549e-05	3	LTR12B.LTR.ERV1	1	-	-	-	-
chrY	20895941	G	n	TT	0.46029	3	LTR12B.LTR.ERV1	1	-	-	-	-
chrY	20896527	G	n	CC	0.00012752	7	LTR12B.LTR.ERV1	2	-	-	-	-
chrY	20896529	C	n	GG	3.2279e-05	7	LTR12B.LTR.ERV1	2	-	-	-	-
chrY	20896602	A	n	GG	2.3634e-17	7	LTR12B.LTR.ERV1	73	rs9786444	single	+	AG
chrY	20909272	C	n	AA	0.013956	2	LTR12B.LTR.ERV1	2995	-	-	-	-
chrY	20912267	T	n	GG	0.058462	2	LTR12B.LTR.ERV1	2995	-	-	-	-
chrY	20915557	A	n	CC	0.01302	3	LTR12B.LTR.ERV1	2270	-	-	-	-
chrY	20917827	T	n	CC	7.6695e-32	19	LTR12B.LTR.ERV1	2270	rs71274808	mnp	+	ACAGGTTCGTGGGCAGGTTCATGC
chrY	20920361	C	n	GG	0.014924	2	LTR12B.LTR.ERV1	20	rs34233180	deletion	-	-G
chrY	20920381	T	n	CC	0.01106	2	LTR12B.LTR.ERV1	2	rs34233180	deletion	-	-G
chrY	20920383	C	n	AA	0.019015	2	LTR12B.LTR.ERV1	2	rs34233180	deletion	-	-G
chrY	20940217	T	n	CC	6.571e-31	14	L1PA2.LINE.L1	9575	rs9782855	single	+	CT
chrY	20949792	G	n	AA	7.9198e-47	19	AluY.SINE.Alu	4513	-	-	-	-
chrY	20954305	G	n	CC	0.014415	3	L1PA3.LINE.L1	4513	-	-	-	-
chrY	20975614	A	n	GG	5.9158e-05	3	LTR25-int.LTR.ERV1	21309	-	-	-	-
chrY	21002222	A	n	GG	0.0057341	2	L1PA5.LINE.L1	26608	-	-	-	-
chrY	21030866	A	n	TT	2.5323e-05	3	L1PA5.LINE.L1	4	-	-	-	-
chrY	21030870	G	n	AA	4.0934e-06	3	L1PA5.LINE.L1	4	-	-	-	-
chrY	21040223	T	n	CC	2.7581e-13	6	MER61A-int.LTR.ERV1	9353	-	-	-	-
chrY	21096934	T	n	AA	2.3767e-110	41	MER61A-int.LTR.ERV1	35033	rs58156847	single	+	AT
chrY	21131967	C	n	TT	7.9725e-46	20	AluSc.SINE.Alu	11178	rs67045710	single	+	CT
chrY	21143145	G	n	CC	4.3773e-08	5	THE1D.LTR.MaLR	11178	rs9786138	single	+	CG
chrY	21159970	A	n	CC	0.029974	2	-	16825	rs1558843	single	+	AC
chrY	21177760	C	n	TT	1.2348e-17	9	L1PA14.LINE.L1	17790	-	-	-	-
chrY	21206084	C	n	TT	1.7814e-19	8	MER4-int.LTR.ERV1	21637	rs9785897	single	+	CT
chrY	21227721	T	n	CC	2.9696e-14	6	L1PBa.LINE.L1	19901	rs67211246	single	+	CT
chrY	21247622	T	n	CC	0.016536	2	L1PA6.LINE.L1	12	-	-	-	-
chrY	21247634	T	n	GG	0.026609	2	L1PA6.LINE.L1	12	-	-	-	-
chrY	21293798	T	n	CC	1.422e-11	5	L1PA6.LINE.L1	4607	-	-	-	-
chrY	21298405	A	n	GG	1.0975e-69	28	-	4607	rs7893073	single	+	AG
chrY	21314003	G	n	AA	0.0035847	2	-	15598	-	-	-	-
chrY	21343496	G	n	AA	5.0531e-11	5	AluJb.SINE.Alu	8308	rs9786516	single	+	AG
chrY	21351804	C	n	TT	7.6061e-12	5	-	8308	-	-	-	-
chrY	21393453	T	n	AA	0.00017623	7	L1PA4.LINE.L1	36	-	-	-	-
chrY	21393489	G	n	CC	3.1358e-08	19	L1PA4.LINE.L1	36	-	-	-	-
chrY	21485666	T	n	CC	3.814e-05	16	L1PA2.LINE.L1	2201	rs9786328	single	+	CT
chrY	21487867	C	n	TT	0.0035673	4	L1PA2.LINE.L1	2201	-	-	-	-
chrY	21499648	C	n	TT	5.6604e-06	3	L1M3f.LINE.L1	11781	-	-	-	-
chrY	21515621	G	n	AA	1.4266e-05	3	L1PA2.LINE.L1	15973	-	-	-	-
chrY	21533754	T	n	GG	3.1334e-53	21	-	18133	rs17316372	single	+	GT
chrY	21556188	T	n	CC	7.5512e-14	6	L1PA8.LINE.L1	22434	-	-	-	-
chrY	21652322	C	n	GG	4.081e-11	5	BSR/Beta.Satellite.Satellite	4420	rs56065197	single	+	CG
chrY	21656742	C	n	TT	4.4385e-07	4	BSR/Beta.Satellite.Satellite	4420	-	-	-	-
chrY	21699603	T	n	CC	0.014645	2	L1PA5.LINE.L1	38563	-	-	-	-
chrY	21738166	A	n	CC	5.9741e-05	4	-	26130	-	-	-	-
chrY	21764296	A	n	CC	8.3231e-14	6	-	24345	rs9786198	single	+	AC
chrY	21788641	A	n	GG	2.9032e-14	6	L1M1.LINE.L1	24345	rs7893080	single	+	AG
chrY	21886323	T	n	GG	0.037338	2	AluJo.SINE.Alu	97682	rs1987290	single	-	AC
chrY	22015892	C	n	GG	1.1334e-06	4	-	25124	-	-	-	-
chrY	22041016	A	n	CC	8.9326e-05	3	-	25124	rs9785974	single	+	AC
chrY	22254796	C	n	TT	1.9936e-24	10	MLT2A1.LTR.ERVL	35965	rs9786747	single	+	CT
chrY	22290761	T	n	CC	0.27494	2	HUERS-P3.LTR.ERV1	35965	-	-	-	-
chrY	22382981	G	n	TT	5.7245e-17	8	-	10462	rs2178500	single	+	GT
chrY	22393443	A	n	GG	8.0685e-06	3	-	8706	rs1276034	single	-	CT
chrY	22402149	A	n	CC	1.3048e-16	7	HERVK14C.LTR.ERVK	4850	rs1276033	single	-	GT
chrY	22406999	C	n	TT	5.1946e-23	10	LTR14C.LTR.ERVK	4850	-	-	-	-
chrY	22459685	G	n	AA	0.0051376	20	-	20524	rs162865	single	+	AG
chrY	22480209	T	n	CC	3.9685e-10	13	AluSx.SINE.Alu	20524	-	-	-	-
chrY	22770351	A	n	GG	3.7284e-31	12	AluJo.SINE.Alu	33648	rs55904672	single	+	AG
chrY	22803999	A	n	GG	2.1573e-25	10	LTR22.LTR.ERVK	11250	rs67462087	single	+	AG
chrY	22815249	T	n	CC	4.9152e-45	17	HERV9.LTR.ERV1	11250	rs34173183	single	-	AG
chrY	22830266	A	n	TT	7.9812e-35	24	-	14569	-	-	-	-
chrY	22844835	G	n	TT	1.101e-08	14	L1PA2.LINE.L1	9174	-	-	-	-
chrY	22854009	T	n	CC	3.119e-45	17	-	3367	rs7893048	single	+	CT
chrY	22857376	A	n	CC	3.1215e-07	4	L1PA17.LINE.L1	3367	rs6530626	single	+	AC
chrY	22863229	G	n	TT	1.7151e-61	35	-	5853	rs72492783	in-del	+	-AACA
chrY	22898458	T	n	GG	0.04608	2	L1PA2.LINE.L1	35229	rs72492783	in-del	+	-AACA
chrY	24211858	C	n	TT	0.0097456	2	L1PA5.LINE.L1	1313400	-	-	-	-
chrY	26870773	T	n	CC	0.0058598	2	-	24834	rs4115245	single	-	AG
chrY	26895607	C	n	AA	6.9663e-39	17	L1HS.LINE.L1	24834	-	-	-	-
chrY	26928280	T	n	CC	0.006271	2	-	31325	-	-	-	-
chrY	26959605	T	n	CC	0.0061473	18	(CTAGGG)n.Simple_repeat.Simple_repeat	6422	-	-	-	-
chrY	26966027	A	n	GG	0.005135	4	-	1749	-	-	-	-
chrY	26967776	C	n	GG	0.013215	2	-	1749	-	-	-	-
chrY	26992103	A	n	GG	5.4797e-17	10	-	5	-	-	-	-
chrY	26992108	T	n	CC	2.79e-27	14	-	5	-	-	-	-
chrY	26992250	A	n	GG	6.6353e-20	8	-	2	rs4008408	single	+	AG
chrY	26992252	A	n	GG	2.6096e-20	8	-	2	rs4008409	single	+	AG
chrY	26994915	A	n	GG	4.8318e-56	25	-	139	-	-	-	-
chrY	26995054	C	n	GG	3.1458e-08	10	-	2	-	-	-	-
chrY	26995056	G	n	AA	7.3322e-09	10	-	2	-	-	-	-
chrY	26995346	T	n	CC	5.5917e-23	11	-	290	-	-	-	-
chrY	26995890	C	n	TT	0.00099998	15	AluSx.SINE.Alu	21	-	-	-	-
chrY	26995911	T	n	AA	4.2324e-34	20	AluSx.SINE.Alu	21	rs73628934	single	+	AT
chrY	26996073	T	n	GG	2.9024e-12	44	AluSx.SINE.Alu	8	-	-	-	-
chrY	26996081	T	n	CC	7.0931e-20	38	-	8	-	-	-	-
chrY	26996162	C	n	TT	8.1705e-152	78	FLAM_A.SINE.Alu	1	rs62614539	single	+	CT
chrY	26996163	A	n	GG	5.3697e-152	78	FLAM_A.SINE.Alu	1	rs62614541	single	+	AG
chrY	26996169	G	n	AA	1.6196e-132	72	FLAM_A.SINE.Alu	6	rs62614542	single	+	AG
chrY	26996619	T	n	CC	4.7466e-28	41	-	227	rs62614543	single	+	CT
chrY	26996846	T	n	CC	0.0032182	6	-	227	-	-	-	-
chrY	26997733	G	n	AA	1.2833e-08	4	-	9	-	-	-	-
chrY	26997742	A	n	TT	3.3289e-08	4	-	9	-	-	-	-
chrY	26998031	T	n	CC	3.8305e-31	28	-	1	-	-	-	-
chrY	26998032	G	n	AA	2.5219e-34	27	-	1	-	-	-	-
chrY	26998044	A	n	GG	4.2843e-31	22	-	12	-	-	-	-
chrY	26999665	A	n	GG	1.2408e-42	19	AluSx.SINE.Alu	1621	rs9785699	single	+	AG
chrY	27002726	C	n	TT	0.056165	2	-	2067	-	-	-	-
chrY	27004793	A	n	GG	2.1943e-75	92	AluSg.SINE.Alu	2067	-	-	-	-
chrY	27013801	A	n	TT	2.6196e-05	17	-	4780	rs73628939	single	+	AT
chrY	27018581	C	n	TT	0.0031087	2	AluJo.SINE.Alu	4780	rs28715531	single	+	CT
chrY	27049982	G	n	TT	0.014155	2	-	31401	-	-	-	-
chrY	27090545	A	n	CC	0.0092021	3	L1MA2.LINE.L1	9418	-	-	-	-
chrY	27099963	T	n	CC	4.6334e-13	14	L1M2b.LINE.L1	1	-	-	-	-
chrY	27099964	G	n	AA	3.1147e-07	16	L1M2b.LINE.L1	1	-	-	-	-
chrY	27103237	A	n	GG	2.3004e-06	16	L1PA12.LINE.L1	2999	-	-	-	-
chrY	27106236	T	n	CC	7.4683e-06	17	L1PA11.LINE.L1	1670	-	-	-	-
chrY	27107906	C	n	TT	4.014e-06	3	L1MEe.LINE.L1	1670	-	-	-	-
chrY	27118730	A	n	GG	0.00024225	17	L1PA15-16.LINE.L1	10824	-	-	-	-
chrY	27136320	G	n	TT	2.2101e-11	35	AluJb.SINE.Alu	928	-	-	-	-
chrY	27137248	T	n	CC	0.0050761	2	-	928	-	-	-	-
chrY	27142488	G	n	CC	1.138e-07	4	-	5240	rs1358368	single	+	CG
chrY	27170665	G	n	TT	1.1389e-06	9	AluY.SINE.Alu	9838	-	-	-	-
chrY	27180503	G	n	CC	6.5902e-48	19	LTR49.LTR.ERV1	9838	rs66802889	single	+	CG
chrY	27193537	C	n	GG	2.5956e-08	4	(GAATG)n.Satellite.Satellite	1768	-	-	-	-
chrY	27195305	C	n	AA	3.4616e-09	27	(GAATG)n.Simple_repeat.Simple_repeat	10	-	-	-	-
chrY	27195315	A	n	GG	9.2159e-14	57	(GAATG)n.Simple_repeat.Simple_repeat	10	-	-	-	-
chrY	27196514	G	n	AA	0.005127	2	(GAATG)n.Satellite.Satellite	14	-	-	-	-
chrY	27196528	C	n	GG	0.014741	2	(GAATG)n.Satellite.Satellite	14	rs72615088	single	+	CG
chrY	27196713	T	n	AA	1.9143e-40	131	(GAATG)n.Satellite.Satellite	185	-	-	-	-
chrY	27198030	G	n	TT	1.59e-34	17	(GAGTG)n.Simple_repeat.Simple_repeat	52	rs35733966	single	+	GT
chrY	27198082	T	n	AA	4.5559e-06	24	(GAGTG)n.Simple_repeat.Simple_repeat	52	rs34303901	single	+	AT
chrY	27200203	C	n	AA	7.6442e-05	8	(GAATG)n.Satellite.Satellite	68	-	-	-	-
chrY	27200271	T	n	GG	2.5101e-11	75	(GAGTG)n.Simple_repeat.Simple_repeat	21	-	-	-	-
chrY	27200292	C	n	AA	1.3e-29	50	(GAGTG)n.Simple_repeat.Simple_repeat	14	-	-	-	-
chrY	27200306	A	n	GG	8.49e-06	17	(GAGTG)n.Simple_repeat.Simple_repeat	14	-	-	-	-
chrY	27201652	C	n	GG	7.5524e-145	129	(GAGTG)n.Simple_repeat.Simple_repeat	79	-	-	-	-
chrY	27201731	C	n	GG	3.8483e-88	80	(CGAAT)n.Simple_repeat.Simple_repeat	79	-	-	-	-
chrY	27201869	T	n	GG	2.3303e-10	5	-	5	rs9786651	single	+	GT
chrY	27201874	T	n	CC	3.5347e-14	6	-	5	rs9786665	single	+	CT
chrY	27202164	A	n	GG	5.8774e-17	18	-	272	-	-	-	-
chrY	27202436	T	n	GG	0.028525	2	-	3	-	-	-	-
chrY	27202439	T	n	GG	0.040369	2	-	3	-	-	-	-
chrY	27204848	A	n	GG	1.6077e-94	81	(GAGTG)n.Simple_repeat.Simple_repeat	91	-	-	-	-
chrY	27204939	T	n	AA	2.4653e-26	33	(GAGTG)n.Simple_repeat.Simple_repeat	91	rs62614555	single	+	AT
chrY	27205271	T	n	GG	2.7164e-05	5	(GAATG)n.Satellite.Satellite	25	-	-	-	-
chrY	27205296	G	n	CC	3.5289e-05	3	(GAATG)n.Satellite.Satellite	10	-	-	-	-
chrY	27205306	A	n	CC	0.00016569	3	(GAATG)n.Satellite.Satellite	10	-	-	-	-
chrY	27205765	T	n	GG	1.1742e-91	75	(GAATG)n.Satellite.Satellite	459	rs62614558	single	+	GT
chrY	27206695	T	n	AA	2.4224e-29	22	(GAATG)n.Simple_repeat.Simple_repeat	1	-	-	-	-
chrY	27206696	A	n	TT	1.3978e-53	24	(GAATG)n.Simple_repeat.Simple_repeat	1	-	-	-	-
chrY	27206765	A	n	GG	0.13068	4	(GAATG)n.Simple_repeat.Simple_repeat	44	-	-	-	-
chrY	27206809	A	n	TT	9.2281e-77	32	(GAATG)n.Simple_repeat.Simple_repeat	44	rs9785919	single	+	AT
chrY	27206853	G	n	TT	3.0252e-36	14	(GAGTG)n.Simple_repeat.Simple_repeat	44	rs9786128	single	+	GT
chrY	27207018	A	n	GG	1.3389e-22	62	(GAATG)n.Simple_repeat.Simple_repeat	23	-	-	-	-
chrY	27207041	G	n	AA	1.08e-20	18	(GAATG)n.Simple_repeat.Simple_repeat	23	-	-	-	-
chrY	27207383	G	n	TT	1.0734e-08	38	(GAGTG)n.Simple_repeat.Simple_repeat	342	-	-	-	-
chrY	27208612	G	n	AA	6.7196e-05	70	(GAATG)n.Simple_repeat.Simple_repeat	1229	-	-	-	-
chrY	27210541	G	n	AA	1.0377e-08	4	(CGAAT)n.Simple_repeat.Simple_repeat	1929	-	-	-	-
chrY	27214267	T	n	GG	0	259	(GAGTG)n.Simple_repeat.Simple_repeat	29	-	-	-	-
chrY	27214296	G	n	TT	3.09e-07	56	-	29	-	-	-	-
chrY	27214513	T	n	GG	3.2259e-43	39	(GAATG)n.Satellite.Satellite	10	rs62615403	single	+	GT
chrY	27214523	T	n	GG	1.8126e-112	80	(GAATG)n.Satellite.Satellite	10	-	-	-	-
chrY	27215185	T	n	GG	3.5697e-21	51	(GAATG)n.Satellite.Satellite	662	rs62642019	single	+	GT
chrY	27216234	T	n	GG	6.4743e-05	25	(GAGTG)n.Simple_repeat.Simple_repeat	259	-	-	-	-
chrY	27216493	C	n	GG	0.025646	4	(GAATG)n.Satellite.Satellite	243	-	-	-	-
chrY	27216736	A	n	TT	1.9395e-216	218	(GAGTG)n.Simple_repeat.Simple_repeat	69	-	-	-	-
chrY	27216805	C	n	GG	1.7825e-45	66	(GAGTG)n.Simple_repeat.Simple_repeat	69	-	-	-	-
chrY	27217287	T	n	AA	2.7208e-38	19	-	32	-	-	-	-
chrY	27217319	A	n	GG	0.0061727	4	-	32	-	-	-	-
chrY	27219182	C	n	GG	0	153	(GAGTG)n.Simple_repeat.Simple_repeat	50	-	-	-	-
chrY	27219232	T	n	GG	4.2569e-285	142	(GAGTG)n.Simple_repeat.Simple_repeat	14	-	-	-	-
chrY	27219246	T	n	GG	6.6489e-122	84	(GAGTG)n.Simple_repeat.Simple_repeat	5	-	-	-	-
chrY	27219251	T	n	AA	3.1662e-119	78	(GAGTG)n.Simple_repeat.Simple_repeat	5	-	-	-	-
chrY	27219269	A	n	GG	2.4261e-119	108	(GAGTG)n.Simple_repeat.Simple_repeat	18	-	-	-	-
chrY	27219321	A	n	GG	3.0826e-31	19	-	52	-	-	-	-
chrY	27219492	A	n	CC	6.0015e-49	27	(GAGTG)n.Simple_repeat.Simple_repeat	2	-	-	-	-
chrY	27219494	A	n	GG	1.3401e-49	27	(GAGTG)n.Simple_repeat.Simple_repeat	2	-	-	-	-
chrY	27219599	G	n	TT	4.546e-259	337	(GAGTG)n.Simple_repeat.Simple_repeat	48	-	-	-	-
chrY	27219647	C	n	AA	3.4391e-180	157	(GAGTG)n.Simple_repeat.Simple_repeat	48	-	-	-	-
chrY	27219778	C	n	GG	0.00019478	22	-	131	-	-	-	-
chrY	27219938	A	n	GG	3.2351e-64	75	(GAGTG)n.Simple_repeat.Simple_repeat	2	-	-	-	-
chrY	27219940	T	n	AA	6.6089e-111	88	(GAGTG)n.Simple_repeat.Simple_repeat	2	-	-	-	-
chrY	27220220	C	n	TT	9.5291e-13	21	(GAATG)n.Satellite.Satellite	15	-	-	-	-
chrY	27220235	G	n	TT	3.1972e-28	25	(GAATG)n.Satellite.Satellite	11	rs34312364	single	+	GT
chrY	27220246	A	n	GG	2.5824e-43	26	(GAATG)n.Satellite.Satellite	11	rs34007408	single	+	AG
chrY	27220292	G	n	CC	3.1302e-85	92	(GAATG)n.Satellite.Satellite	20	rs9786339	single	+	CG
chrY	27220312	G	n	CC	1.715e-54	53	(GAATG)n.Satellite.Satellite	20	-	-	-	-
chrY	27220885	T	n	GG	7.2112e-62	51	(GAATG)n.Satellite.Satellite	2	-	-	-	-
chrY	27220887	G	n	AA	1.5847e-71	49	(GAATG)n.Satellite.Satellite	2	-	-	-	-
chrY	27222120	T	n	GG	4.5233e-19	10	-	2	-	-	-	-
chrY	27222122	A	n	GG	9.2549e-26	10	-	2	-	-	-	-
chrY	27222146	C	n	AA	2.0727e-20	11	(GAGTG)n.Simple_repeat.Simple_repeat	24	-	-	-	-
chrY	27222258	G	n	TT	0.010261	4	(GAATG)n.Simple_repeat.Simple_repeat	50	-	-	-	-
chrY	27222308	A	n	GG	2.3008e-76	30	(GAATG)n.Simple_repeat.Simple_repeat	50	-	-	-	-
chrY	27222367	T	n	AA	3.7661e-10	7	(GAGTG)n.Simple_repeat.Simple_repeat	59	rs71265353	single	-	AT
chrY	27222464	A	n	GG	7.6705e-91	229	(GAGTG)n.Simple_repeat.Simple_repeat	9	-	-	-	-
chrY	27222473	A	n	GG	8.582e-308	118	(GAGTG)n.Simple_repeat.Simple_repeat	9	rs62615407	single	+	AG
chrY	27222509	C	n	GG	1.2146e-10	12	(GAGTG)n.Simple_repeat.Simple_repeat	36	-	-	-	-
chrY	27222725	T	n	GG	5.608e-30	12	-	5	rs71265352	single	-	AC
chrY	27222730	T	n	CC	8.7661e-29	12	-	5	-	-	-	-
chrY	27222918	G	n	AA	0.0062541	2	(GAGTG)n.Simple_repeat.Simple_repeat	188	-	-	-	-
chrY	27223160	A	n	GG	0.0087817	8	(GAATG)n.Satellite.Satellite	242	-	-	-	-
chrY	27223761	G	n	AA	1.0594e-141	127	(GAATG)n.Satellite.Satellite	7	-	-	-	-
chrY	27223768	A	n	GG	2.1275e-18	30	(GAATG)n.Satellite.Satellite	7	-	-	-	-
chrY	27223780	C	n	GG	0.017529	2	(GAATG)n.Satellite.Satellite	12	-	-	-	-
chrY	27224206	T	n	GG	5.8198e-63	54	(GAATG)n.Satellite.Satellite	307	-	-	-	-
chrY	27224513	G	n	CC	2.3101e-10	6	(GAGTG)n.Simple_repeat.Simple_repeat	307	-	-	-	-
chrY	27226257	T	n	GG	0	324	(GAGTG)n.Simple_repeat.Simple_repeat	8	rs7067333	single	+	GT
chrY	27226265	C	n	GG	4.1754e-38	459	(GAGTG)n.Simple_repeat.Simple_repeat	8	rs7067451	single	+	CG
chrY	27226335	C	n	GG	0	612	(GAGTG)n.Simple_repeat.Simple_repeat	51	rs7067291	single	+	CG
chrY	27226386	G	n	AA	4.8628e-102	37	(CGAAT)n.Simple_repeat.Simple_repeat	1	rs7067369	single	+	AG
chrY	27226387	C	n	AA	5.569e-100	37	(CGAAT)n.Simple_repeat.Simple_repeat	1	rs7067324	single	+	AC
chrY	27226946	T	n	GG	0	334	(GAATG)n.Satellite.Satellite	559	rs7067270	single	+	GT
chrY	57232672	C	n	TT	0.013571	5	(CATTC)n.Satellite.Satellite	1	rs71228622	deletion	+	-CCC
chrY	57232673	T	n	CC	9.3838e-09	6	(CATTC)n.Satellite.Satellite	1	rs71228622	deletion	+	-CCC
chrY	57238765	G	n	CC	1.3243e-157	59	-	6092	rs71228622	deletion	+	-CCC
chrY	57248017	G	n	CC	7.514e-213	339	(CATTC)n.Satellite.Satellite	4	rs71228622	deletion	+	-CCC
chrY	57248021	G	n	CC	4.3405e-283	532	(CATTC)n.Satellite.Satellite	4	rs71228622	deletion	+	-CCC
chrY	57250244	G	n	AA	4.3882e-194	84	(CATTC)n.Satellite.Satellite	1808	rs71228622	deletion	+	-CCC
chrY	57252052	G	n	AA	2.5232e-16	8	(CATTC)n.Satellite.Satellite	81	rs72050866	deletion	+	-CGATTCCATTCCATT
chrY	57252133	C	n	AA	0.074479	14	(CATTC)n.Satellite.Satellite	23	rs72050866	deletion	+	-CGATTCCATTCCATT
chrY	57252156	T	n	CC	1.5075e-18	38	(CATTC)n.Satellite.Satellite	23	rs72050866	deletion	+	-CGATTCCATTCCATT
chrY	57252484	G	n	TT	0	266	(CATTC)n.Satellite.Satellite	328	rs72050866	deletion	+	-CGATTCCATTCCATT
chrY	57253360	G	n	TT	0.00098623	10	(CATTC)n.Satellite.Satellite	876	rs72050866	deletion	+	-CGATTCCATTCCATT
chrY	57254851	C	n	AA	0.04357	79	(CATTC)n.Satellite.Satellite	1027	rs72050866	deletion	+	-CGATTCCATTCCATT
chrY	57255878	A	n	GG	5.1185e-08	5	(CATTC)n.Satellite.Satellite	1027	rs72050866	deletion	+	-CGATTCCATTCCATT
chrY	57265425	G	n	AA	0	1386	(CATTC)n.Satellite.Satellite	83	rs71224983	mnp	+	AACTCCGACTCT
chrY	57265508	A	n	CC	2.02073e-321	793	(CATTC)n.Satellite.Satellite	83	rs71224983	mnp	+	AACTCCGACTCT
chrY	57266262	G	n	CC	9.4904e-05	3	(CATTC)n.Satellite.Satellite	49	rs71224983	mnp	+	AACTCCGACTCT
chrY	57266311	A	n	TT	1.191e-11	23	(CATTC)n.Satellite.Satellite	49	rs71224983	mnp	+	AACTCCGACTCT
chrY	57266776	G	n	TT	2.5309e-43	27	(CATTC)n.Satellite.Satellite	465	rs71224983	mnp	+	AACTCCGACTCT
chrY	57268951	A	n	GG	1.0496e-05	3	(CATTC)n.Satellite.Satellite	2175	rs72496942	deletion	+	-CGT
chrY	57271354	T	n	AA	3.75e-06	9	-	399	rs72496942	deletion	+	-CGT
chrY	57271753	T	n	GG	2.7471e-55	64	-	394	rs72496942	deletion	+	-CGT
chrY	57272147	C	n	AA	0	1570	(CATTC)n.Satellite.Satellite	394	rs72496942	deletion	+	-CGT
chrY	57273166	A	n	GG	0.29125	5	(CATTC)n.Satellite.Satellite	2	rs72496942	deletion	+	-CGT
chrY	57273168	C	n	TT	0.0057691	3	(CATTC)n.Satellite.Satellite	2	rs72496942	deletion	+	-CGT
chrY	57278485	T	n	AA	1.102e-46	23	-	4	rs71274530	mnp	+	AACC
chrY	57278489	T	n	CC	5.9863e-89	36	-	4	rs71274530	mnp	+	AACC
chrY	57284137	C	n	TT	5.6515e-40	26	(CATTC)n.Satellite.Satellite	8	rs3042097	deletion	-	-GGA
chrY	57284145	G	n	CC	6.0653e-47	29	(CATTC)n.Satellite.Satellite	8	rs3042097	deletion	-	-GGA
chrY	57285954	A	n	TT	4.1903e-36	23	-	29	rs71213965	mnp	-	CTGG
chrY	57285983	G	n	AA	9.6594e-63	41	(CATTC)n.Satellite.Satellite	29	rs71213965	mnp	-	CTGG
chrY	57290978	A	n	CC	8.6645e-18	38	(CATTC)n.Satellite.Satellite	3	rs71303190	mnp	-	AGAATGGGATCAGGAATGGGATCG
chrY	57290981	G	n	TT	1.3548e-06	35	(CATTC)n.Satellite.Satellite	3	rs71303190	mnp	-	AGAATGGGATCAGGAATGGGATCG
chrY	57290991	A	n	TT	1.3193e-262	146	(CATTC)n.Satellite.Satellite	4	rs71303190	mnp	-	AGAATGGGATCAGGAATGGGATCG
chrY	57290995	C	n	AA	0	308	(CATTC)n.Satellite.Satellite	4	rs71303190	mnp	-	AGAATGGGATCAGGAATGGGATCG
chrY	57291787	G	n	TT	3.4262e-66	36	(CATTC)n.Satellite.Satellite	792	rs71303190	mnp	-	AGAATGGGATCAGGAATGGGATCG
chrY	57293638	C	n	TT	1.0402e-164	391	(CATTC)n.Satellite.Satellite	380	rs71303190	mnp	-	AGAATGGGATCAGGAATGGGATCG
chrY	57294018	T	n	CC	3.3315e-47	42	-	380	rs71303190	mnp	-	AGAATGGGATCAGGAATGGGATCG
chrY	57294550	A	n	TT	0	438	(CATTC)n.Satellite.Satellite	532	rs71303190	mnp	-	AGAATGGGATCAGGAATGGGATCG
chrY	57300365	T	n	CC	1.1508e-38	279	(CATTC)n.Satellite.Satellite	2618	rs71303190	mnp	-	AGAATGGGATCAGGAATGGGATCG
chrY	57302983	C	n	GG	7.1318e-28	11	-	31	rs71286154	mnp	+	CTTCGTTTCC
chrY	57303014	A	n	TT	0	299	(CATTC)n.Satellite.Satellite	31	rs71286154	mnp	+	CTTCGTTTCC
chrY	57304242	A	n	GG	3.6059e-14	18	(CATTC)n.Satellite.Satellite	453	rs71286154	mnp	+	CTTCGTTTCC
chrY	57304695	G	n	CC	5.6292e-10	5	(CATTC)n.Satellite.Satellite	453	rs71286154	mnp	+	CTTCGTTTCC
chrY	57307740	A	n	CC	1.0006e-06	15	(CATTC)n.Satellite.Satellite	1	rs71307785	mnp	+	GACTTACA
chrY	57307741	T	n	CC	8.1339e-11	14	(CATTC)n.Satellite.Satellite	1	rs71307785	mnp	+	GACTTACA
chrY	57320075	T	n	CC	7.5875e-05	58	(CATTC)n.Satellite.Satellite	271	rs72496944	deletion	+	-GTGTCCATTCCATTCCGTGG
chrY	57320346	G	n	CC	0.30921	15	(CATTC)n.Satellite.Satellite	271	rs72496944	deletion	+	-GTGTCCATTCCATTCCGTGG
chrY	57322228	C	n	TT	0	553	(CATTC)n.Satellite.Satellite	1882	rs71212151	mnp	-	CATT
chrY	57325296	C	n	TT	4.091e-26	14	(CATTC)n.Satellite.Satellite	1748	rs2138993	single	+	CT
chrY	57377252	T	n	CC	0.0050761	2	-	209	rs2527493	single	-	AG
chrY	57377461	G	n	AA	3.4157e-11	9	-	209	rs2641209	single	-	CT
chrY	57377891	T	n	AA	1.7347e-111	60	-	85	rs2641208	single	-	AT
chrY	57377976	C	n	AA	1.8533e-76	32	-	71	rs2641206	single	-	GT
chrY	57378047	G	n	TT	7.1005e-08	4	-	29	rs2641205	single	-	AC
chrY	57378076	T	n	GG	5.5908e-09	5	-	29	rs2527490	single	-	AC
chrY	57378111	T	n	CC	2.3911e-08	8	-	35	rs4893814	single	-	AG
chrY	57378203	T	n	GG	2.0622e-12	7	-	72	rs28374335	single	+	GT
chrY	57378275	A	n	GG	1.9195e-67	35	-	51	rs4576608	single	-	CT
chrY	57378326	G	n	AA	2.7518e-21	10	-	51	rs4636392	single	-	CT
chrY	57379031	G	n	CC	1.5396e-16	13	-	268	rs4893702	single	-	CG
chrY	57379299	G	n	AA	1.505e-17	17	-	65	rs7067468	single	-	CT
chrY	57379364	T	n	CC	0.0083417	10	-	65	rs7067403	single	-	AG
chrY	57379635	T	n	CC	1.1743e-08	4	-	52	rs2047088	single	-	AG
chrY	57379687	G	n	AA	6.377e-06	7	-	52	rs2334094	single	-	CT
chrY	57379870	T	n	CC	3.6203e-11	5	L1P3.LINE.L1	183	rs4047325	single	-	AG
chrY	57380569	A	n	TT	0.021194	2	L1P3.LINE.L1	178	rs2453027	single	-	AT
chrY	57380747	G	n	AA	4.2295e-05	11	L1P3.LINE.L1	178	rs7067228	single	-	CT
chrY	57380951	T	n	AA	0.043776	2	L1P3.LINE.L1	108	rs2527489	single	-	AT
chrY	57381059	C	n	TT	5.8325e-06	5	L1P3.LINE.L1	2	rs2641204	single	-	AG
chrY	57381061	T	n	CC	5.5792e-09	6	L1P3.LINE.L1	2	rs2527488	single	-	AG
chrY	57381186	G	n	CC	1.9379e-73	77	L1P3.LINE.L1	125	rs2527487	single	-	CG
chrY	57381340	A	n	GG	5.4517e-23	33	(CATTC)n.Satellite.Satellite	139	rs2878114	single	-	CT
chrY	57381479	A	n	GG	7.5077e-70	52	(CATTC)n.Satellite.Satellite	14	-	-	-	-
chrY	57381493	A	n	CC	2.2861e-94	55	(CATTC)n.Satellite.Satellite	14	rs58672290	single	+	AC
chrY	57381701	C	n	GG	1.0368e-33	70	(CATTC)n.Satellite.Satellite	208	rs12164443	single	+	CG
chrY	57382061	T	n	CC	4.4583e-272	129	(CATTC)n.Satellite.Satellite	180	-	-	-	-
chrY	57382241	A	n	TT	7.4231e-35	50	(CATTC)n.Satellite.Satellite	96	-	-	-	-
chrY	57382337	G	n	AA	1.2253e-152	592	(CATTC)n.Satellite.Satellite	96	-	-	-	-
chrY	57382750	C	n	AA	7.7437e-61	39	(CATTC)n.Satellite.Satellite	13	rs28971403	single	-	AG
chrY	57382763	C	n	TT	2.3051e-24	58	(CATTC)n.Satellite.Satellite	13	rs28971403	single	-	AG
chrY	57382779	A	n	TT	2.4118e-17	159	(CATTC)n.Satellite.Satellite	16	-	-	-	-
chrY	57382815	T	n	CC	5.1734e-90	40	-	36	rs2527486	single	-	AG
chrY	57382968	T	n	CC	3.8274e-114	125	(CATTC)n.Satellite.Satellite	53	rs2527485	single	-	AG
chrY	57383021	G	n	AA	4.0967e-110	102	(CATTC)n.Satellite.Satellite	53	rs2527484	single	-	CT
chrY	57383221	T	n	CC	3.6886e-23	57	-	30	rs7474496	single	-	AG
chrY	57383251	T	n	CC	1.4339e-42	32	(CATTC)n.Satellite.Satellite	30	rs7474490	single	-	AG
chrY	57383358	C	n	TT	0.37351	27	(CATTC)n.Satellite.Satellite	107	-	-	-	-
chrY	57383663	T	n	CC	1.3742e-186	142	(CATTC)n.Satellite.Satellite	305	-	-	-	-
chrY	57384086	T	n	GG	1.8205e-12	52	(CATTC)n.Satellite.Satellite	423	rs10449148	single	+	GT
chrY	57384554	A	n	TT	1.0857e-25	46	(CATTC)n.Satellite.Satellite	79	rs55885158	single	-	GT
chrY	57384633	T	n	GG	1.5746e-61	57	(CATTC)n.Satellite.Satellite	56	rs56267540	single	+	GT
chrY	57384689	T	n	AA	3.5387e-18	51	(CATTC)n.Satellite.Satellite	56	-	-	-	-
chrY	57384864	G	n	AA	6.2397e-55	49	(CATTC)n.Satellite.Satellite	52	rs62641836	single	+	AG
chrY	57384916	C	n	TT	1.7541e-15	89	(CATTC)n.Satellite.Satellite	2	-	-	-	-
chrY	57384918	C	n	GG	0.00021056	89	(CATTC)n.Satellite.Satellite	2	-	-	-	-
chrY	57384994	T	n	GG	9.8813e-39	30	(CATTC)n.Satellite.Satellite	76	rs28714597	single	+	GT
chrY	57385151	G	n	AA	1.091e-76	73	(CATTC)n.Satellite.Satellite	24	-	-	-	-
chrY	57385175	C	n	GG	0.02016	282	-	24	-	-	-	-
chrY	57385643	A	n	GG	2.0128e-294	140	(CACTC)n.Simple_repeat.Simple_repeat	76	rs72483748	in-del	-	-GAATG
chrY	57385719	T	n	CC	2.8677e-104	63	(CATTC)n.Satellite.Satellite	76	rs72483748	in-del	-	-GAATG
chrY	57385894	T	n	CC	3.6423e-101	226	(CATTC)n.Satellite.Satellite	72	rs72483748	in-del	-	-GAATG
chrY	57385966	C	n	GG	3.1723e-10	56	AluJ/FRAM.SINE.Alu	72	rs72483748	in-del	-	-GAATG
chrY	57386075	G	n	AA	0.016465	8	(CATTC)n.Simple_repeat.Simple_repeat	1	rs72483748	in-del	-	-GAATG
chrY	57386076	C	n	TT	0.003814	8	(CATTC)n.Simple_repeat.Simple_repeat	1	rs72483748	in-del	-	-GAATG
chrY	57386169	A	n	GG	0.0091515	24	(CATTC)n.Simple_repeat.Simple_repeat	22	rs72483748	in-del	-	-GAATG
chrY	57386191	T	n	CC	1.6097e-79	69	(CATTC)n.Simple_repeat.Simple_repeat	22	rs72483748	in-del	-	-GAATG
chrY	57386224	T	n	CC	1.9569e-250	143	(CACTC)n.Simple_repeat.Simple_repeat	33	rs72483748	in-del	-	-GAATG
chrY	57386273	T	n	CC	0	249	(CACTC)n.Simple_repeat.Simple_repeat	49	rs72483748	in-del	-	-GAATG
chrY	57386474	G	n	AA	0	176	-	201	rs72483748	in-del	-	-GAATG
chrY	57386852	G	n	AA	7.8392e-49	96	AluJ/FRAM.SINE.Alu	194	rs55707939	single	+	AG
chrY	57387046	C	n	TT	2.0286e-28	36	(CATTC)n.Simple_repeat.Simple_repeat	14	rs4893802	single	-	AG
chrY	57387060	G	n	CC	6.3517e-118	74	Alu.SINE.Alu	14	rs4893801	single	-	CG
chrY	57387116	C	n	TT	7.2676e-122	72	-	56	rs4893696	single	-	AG
chrY	57387175	G	n	CC	3.2083e-22	86	(CATTC)n.Simple_repeat.Simple_repeat	40	rs4893800	single	-	CG
chrY	57387215	G	n	CC	8.1925e-116	104	(CATTC)n.Simple_repeat.Simple_repeat	40	rs4893799	single	-	CG
chrY	57387279	T	n	CC	1.1871e-82	49	-	17	rs9803591	single	+	CT
chrY	57387296	T	n	AA	1.5024e-98	144	-	17	rs9803594	single	+	AT
chrY	57387474	T	n	CC	2.5241e-65	174	(CACTC)n.Simple_repeat.Simple_repeat	52	-	-	-	-
chrY	57387526	G	n	CC	0	259	(CACTC)n.Simple_repeat.Simple_repeat	48	rs9803589	single	+	CG
chrY	57387574	T	n	CC	1.0918e-39	242	(CACTC)n.Simple_repeat.Simple_repeat	48	rs13303386	single	+	CT
chrY	57387645	G	n	TT	6.7374e-33	66	(CACTC)n.Simple_repeat.Simple_repeat	43	rs13305078	single	+	GT
chrY	57387688	G	n	AA	1.1356e-43	26	-	43	rs10453801	single	+	AG/T
chrY	57387837	C	n	TT	2.4924e-80	208	(CATTC)n.Simple_repeat.Simple_repeat	149	rs4893797	single	-	AG
chrY	57388029	C	n	TT	8.0104e-286	160	(CATTC)n.Simple_repeat.Simple_repeat	39	rs72492060	in-del	+	-TTCCA
chrY	57388068	G	n	CC	0.078305	71	(CATTC)n.Simple_repeat.Simple_repeat	33	rs72492060	in-del	+	-TTCCA
chrY	57388101	A	n	CC	1.4659e-13	14	(CATTC)n.Simple_repeat.Simple_repeat	33	rs72492060	in-del	+	-TTCCA
chrY	57388245	G	n	CC	2.0602e-271	173	(CATTC)n.Simple_repeat.Simple_repeat	51	rs72492060	in-del	+	-TTCCA
chrY	57388296	G	n	TT	1.6894e-201	134	(CATTC)n.Simple_repeat.Simple_repeat	4	rs72492060	in-del	+	-TTCCA
chrY	57388300	A	n	CC	2.6229e-205	137	(CATTC)n.Simple_repeat.Simple_repeat	4	rs72492060	in-del	+	-TTCCA
chrY	57388494	C	n	AA	0.37904	51	(CATTC)n.Simple_repeat.Simple_repeat	83	rs72492060	in-del	+	-TTCCA
chrY	57388577	A	n	CC	8.5167e-109	62	-	19	rs72492060	in-del	+	-TTCCA
chrY	57388596	G	n	AA	5.5354e-94	58	(CATTC)n.Simple_repeat.Simple_repeat	19	rs72492060	in-del	+	-TTCCA
chrY	57388624	A	n	CC	4.8246e-107	74	(CATTC)n.Simple_repeat.Simple_repeat	28	rs72492060	in-del	+	-TTCCA
chrY	57388751	C	n	AA	6.6208e-204	124	(CACTC)n.Simple_repeat.Simple_repeat	127	rs72492060	in-del	+	-TTCCA
chrY	57389011	A	n	CC	3.1285e-133	51	(CATTC)n.Simple_repeat.Simple_repeat	2	rs72492060	in-del	+	-TTCCA
chrY	57389013	C	n	AA	4.2957e-130	50	(CATTC)n.Simple_repeat.Simple_repeat	2	rs72492060	in-del	+	-TTCCA
chrY	57389101	T	n	CC	0	264	(CACTC)n.Simple_repeat.Simple_repeat	26	rs72492060	in-del	+	-TTCCA
chrY	57389127	C	n	TT	4.8944e-75	136	(CACTC)n.Simple_repeat.Simple_repeat	1	rs72492060	in-del	+	-TTCCA
chrY	57389128	A	n	GG	1.7225e-86	134	(CACTC)n.Simple_repeat.Simple_repeat	1	rs72492060	in-del	+	-TTCCA
chrY	57389427	G	n	TT	6.3764e-246	165	(CATTC)n.Simple_repeat.Simple_repeat	256	rs36175713	in-del	+	-G
chrY	57389683	C	n	TT	2.7148e-98	63	(CACTC)n.Simple_repeat.Simple_repeat	256	rs9320074	single	+	CT
chrY	57390456	C	n	TT	7.1092e-06	28	(CATTC)n.Simple_repeat.Simple_repeat	380	rs55746109	single	+	CT
chrY	57390836	G	n	AA	7.6499e-83	204	AluJ/FRAM.SINE.Alu	33	rs2641192	single	-	CT
chrY	57390869	C	n	TT	4.8524e-12	24	-	33	rs2641191	single	-	AG
chrY	57391146	T	n	CC	1.6072e-80	83	-	195	-	-	-	-
chrY	57391341	G	n	CC	7.8242e-40	20	-	173	rs62607375	single	+	CG
chrY	57391514	G	n	AA	4.1216e-12	65	(CACTC)n.Simple_repeat.Simple_repeat	33	rs62607377	single	+	AG
chrY	57391547	G	n	TT	2.2153e-269	173	AluJ/FRAM.SINE.Alu	33	rs34061176	single	-	AC
chrY	57391666	G	n	AA	7.1134e-52	114	(CATTC)n.Simple_repeat.Simple_repeat	12	-	-	-	-
chrY	57391678	G	n	CC	8.456e-16	110	(CATTC)n.Simple_repeat.Simple_repeat	12	rs35075584	single	-	CG
chrY	57391878	C	n	GG	6.0669e-62	48	(CATTC)n.Satellite.Satellite	68	rs4893791	single	-	CG
chrY	57391946	A	n	CC	2.2919e-104	78	(CATTC)n.Satellite.Satellite	28	rs4893790	single	-	GT
chrY	57391974	G	n	AA	3.9923e-138	180	(CATTC)n.Satellite.Satellite	28	rs4893789	single	-	CT
chrY	57392701	T	n	GG	9.8828e-149	69	BSR/Beta.Satellite.Satellite	288	rs2641189	single	-	AC
chrY	57392989	G	n	CC	7.1748e-50	26	BSR/Beta.Satellite.Satellite	2	rs2527479	single	-	CG
chrY	57392991	A	n	GG	1.8158e-39	24	BSR/Beta.Satellite.Satellite	2	rs2527478	single	-	CT
chrY	57393091	T	n	CC	0	458	BSR/Beta.Satellite.Satellite	100	rs2527477	single	-	AG
chrY	57393196	A	n	GG	1.3025e-112	62	BSR/Beta.Satellite.Satellite	105	rs2527476	single	-	CT
chrY	57393596	A	n	CC	0.018371	55	BSR/Beta.Satellite.Satellite	24	rs10449157	single	+	AC
chrY	57393620	A	n	GG	2.1371e-56	39	BSR/Beta.Satellite.Satellite	24	rs2527472	single	-	CT
chrY	57393695	C	n	TT	6.3253e-70	38	BSR/Beta.Satellite.Satellite	75	rs2641187	single	-	AG
chrY	57394051	C	n	GG	3.1141e-71	357	BSR/Beta.Satellite.Satellite	10	-	-	-	-
chrY	57394061	T	n	CC	0	536	BSR/Beta.Satellite.Satellite	10	-	-	-	-
chrY	57394073	T	n	CC	0	561	BSR/Beta.Satellite.Satellite	12	-	-	-	-
chrY	57394253	T	n	GG	7.3473e-31	28	BSR/Beta.Satellite.Satellite	31	rs2641184	single	-	AC
chrY	57394284	A	n	CC	5.9751e-47	38	BSR/Beta.Satellite.Satellite	13	rs2527470	single	-	GT
chrY	57394297	T	n	GG	1.7927e-28	33	BSR/Beta.Satellite.Satellite	13	rs2641183	single	-	AC
chrY	57394324	T	n	CC	8.4449e-38	28	BSR/Beta.Satellite.Satellite	27	rs2527469	single	-	AG
chrY	57394769	T	n	AA	9.2927e-136	59	BSR/Beta.Satellite.Satellite	73	rs2527466	single	-	AT
chrY	57394842	A	n	GG	2.4002e-66	47	BSR/Beta.Satellite.Satellite	3	rs2527465	single	-	CT
chrY	57394845	A	n	TT	1.7125e-07	45	BSR/Beta.Satellite.Satellite	3	rs11799089	single	+	AT
chrY	57394935	A	n	TT	1.4906e-81	138	BSR/Beta.Satellite.Satellite	90	-	-	-	-
chrY	57395081	T	n	GG	4.4737e-41	42	BSR/Beta.Satellite.Satellite	2	rs2641182	single	-	AC
chrY	57395083	T	n	AA	8.0882e-32	39	BSR/Beta.Satellite.Satellite	2	rs2527464	single	-	AT
chrY	57395099	T	n	GG	1.3136e-102	74	BSR/Beta.Satellite.Satellite	16	rs9633275	single	-	AC
chrY	57395171	T	n	CC	9.3283e-111	92	BSR/Beta.Satellite.Satellite	41	rs57432818	single	+	CT
chrY	57395212	G	n	AA	1.4781e-124	259	BSR/Beta.Satellite.Satellite	41	-	-	-	-
chrY	57395385	T	n	GG	4.2994e-37	30	BSR/Beta.Satellite.Satellite	31	rs62605582	single	+	GT
chrY	57395416	G	n	AA	9.4024e-31	35	BSR/Beta.Satellite.Satellite	31	rs36083127	single	-	CT
chrY	57395637	A	n	CC	1.7472e-53	47	BSR/Beta.Satellite.Satellite	92	rs9633271	single	-	GT
chrY	57395729	A	n	CC	9.8831e-219	125	BSR/Beta.Satellite.Satellite	76	rs10449158	single	+	AC
chrY	57395805	T	n	GG	1.4841e-99	54	BSR/Beta.Satellite.Satellite	39	rs10449160	single	+	GT
chrY	57395844	A	n	TT	2.0686e-10	30	BSR/Beta.Satellite.Satellite	39	rs3965800	single	-	AT
chrY	57396175	G	n	AA	1.6206e-36	35	BSR/Beta.Satellite.Satellite	2	rs2641181	single	-	CT
chrY	57396177	C	n	TT	8.4841e-43	33	BSR/Beta.Satellite.Satellite	2	rs2527463	single	-	AG
chrY	57396230	C	n	TT	6.84e-19	21	BSR/Beta.Satellite.Satellite	53	rs2527462	single	-	AG
chrY	57396408	A	n	CC	3.799e-75	37	BSR/Beta.Satellite.Satellite	37	rs9633264	single	-	GT
chrY	57396445	A	n	GG	1.018e-37	18	BSR/Beta.Satellite.Satellite	26	rs9633263	single	-	CT
chrY	57396471	C	n	TT	9.4485e-71	48	BSR/Beta.Satellite.Satellite	26	rs9633262	single	-	AG
chrY	57396624	A	n	GG	1.1457e-69	47	BSR/Beta.Satellite.Satellite	43	rs62605584	single	+	AG
chrY	57396667	T	n	CC	4.3269e-40	50	BSR/Beta.Satellite.Satellite	22	-	-	-	-
chrY	57396689	A	n	GG	1.4867e-65	37	BSR/Beta.Satellite.Satellite	22	rs62605585	single	+	AG
chrY	57396772	T	n	CC	1.8683e-28	96	BSR/Beta.Satellite.Satellite	83	-	-	-	-
chrY	57396944	T	n	CC	4.6451e-31	18	BSR/Beta.Satellite.Satellite	3	rs62605586	single	+	CT
chrY	57396947	T	n	CC	4.8383e-31	18	BSR/Beta.Satellite.Satellite	3	rs8181268	single	-	AG
chrY	57397019	T	n	CC	2.4472e-171	119	BSR/Beta.Satellite.Satellite	32	-	-	-	-
chrY	57397051	C	n	TT	2.5863e-45	69	BSR/Beta.Satellite.Satellite	32	-	-	-	-
chrY	57397099	C	n	TT	0.00012547	24	BSR/Beta.Satellite.Satellite	48	rs8181275	single	-	AG
chrY	57397380	T	n	GG	3.9909e-178	81	BSR/Beta.Satellite.Satellite	78	rs8181269	single	-	AC
chrY	57397458	T	n	CC	6.9577e-35	21	BSR/Beta.Satellite.Satellite	58	rs8181276	single	-	AG
chrY	57397516	T	n	CC	4.5976e-44	28	BSR/Beta.Satellite.Satellite	45	rs8181270	single	-	AG
chrY	57397561	T	n	CC	1.2804e-11	10	BSR/Beta.Satellite.Satellite	45	rs10449126	single	+	CT
chrY	57397627	T	n	CC	2.5593e-84	55	BSR/Beta.Satellite.Satellite	66	rs10449127	single	+	CT
chrY	57397961	C	n	TT	7.2739e-66	64	BSR/Beta.Satellite.Satellite	154	rs2527457	single	-	AG
chrY	57398115	T	n	CC	0	210	BSR/Beta.Satellite.Satellite	83	rs2527456	single	-	AG
chrY	57398198	C	n	TT	1.7745e-117	127	BSR/Beta.Satellite.Satellite	83	rs2527455	single	-	AG
chrY	57398459	C	n	GG	3.4784e-90	39	BSR/Beta.Satellite.Satellite	261	rs2527453	single	-	CG
chrY	57398902	G	n	AA	2.8699e-192	109	BSR/Beta.Satellite.Satellite	173	rs2641177	single	-	CT
chrY	57399075	A	n	GG	1.717e-27	17	BSR/Beta.Satellite.Satellite	46	rs2527451	single	-	CT
chrY	57399121	T	n	CC	0	156	BSR/Beta.Satellite.Satellite	42	rs2527450	single	-	AG
chrY	57399163	T	n	CC	2.9343e-95	140	BSR/Beta.Satellite.Satellite	2	-	-	-	-
chrY	57399165	C	n	AA	1.005e-80	133	BSR/Beta.Satellite.Satellite	2	-	-	-	-
chrY	57399197	A	n	CC	2.3758e-15	125	BSR/Beta.Satellite.Satellite	6	-	-	-	-
chrY	57399203	A	n	GG	4.9164e-58	132	BSR/Beta.Satellite.Satellite	6	-	-	-	-
chrY	57399209	G	n	TT	1.008e-66	155	BSR/Beta.Satellite.Satellite	6	-	-	-	-
chrY	57399262	C	n	TT	5.0485e-05	88	BSR/Beta.Satellite.Satellite	53	-	-	-	-
chrY	57399444	C	n	TT	2.749e-103	69	BSR/Beta.Satellite.Satellite	3	-	-	-	-
chrY	57399447	T	n	CC	2.3692e-98	83	BSR/Beta.Satellite.Satellite	3	rs12560257	single	+	CT
chrY	57399506	T	n	CC	1.321e-148	80	BSR/Beta.Satellite.Satellite	59	rs9633259	single	-	AG
chrY	57399755	A	n	GG	0.00012759	26	BSR/Beta.Satellite.Satellite	58	rs9633257	single	-	CT
chrY	57399813	T	n	CC	3.5957e-135	88	BSR/Beta.Satellite.Satellite	58	rs9633256	single	-	AG
chrY	57399964	T	n	AA	8.34e-313	168	BSR/Beta.Satellite.Satellite	75	rs10453813	single	+	AT
chrY	57400039	C	n	TT	1.2951e-06	30	BSR/Beta.Satellite.Satellite	75	rs10453814	single	+	CT
chrY	57400493	G	n	CC	1.0012e-141	69	BSR/Beta.Satellite.Satellite	46	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57400539	T	n	GG	1.4093e-242	151	BSR/Beta.Satellite.Satellite	46	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57400602	T	n	CC	1.0672e-36	40	BSR/Beta.Satellite.Satellite	63	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57400802	C	n	GG	1.0837e-60	35	BSR/Beta.Satellite.Satellite	2	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57400804	T	n	CC	2.712e-55	32	BSR/Beta.Satellite.Satellite	2	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57400852	G	n	AA	1.4455e-40	85	BSR/Beta.Satellite.Satellite	48	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57400931	G	n	AA	1.3108e-11	31	BSR/Beta.Satellite.Satellite	79	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57401068	C	n	GG	4.915e-243	556	BSR/Beta.Satellite.Satellite	32	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57401100	A	n	TT	1.1115e-197	107	BSR/Beta.Satellite.Satellite	32	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57401141	A	n	GG	1.6462e-09	36	BSR/Beta.Satellite.Satellite	41	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57401199	C	n	TT	1.1455e-33	24	BSR/Beta.Satellite.Satellite	58	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57401329	T	n	AA	1.2823e-44	106	BSR/Beta.Satellite.Satellite	58	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57401387	G	n	CC	2.6797e-24	18	BSR/Beta.Satellite.Satellite	58	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57401469	G	n	CC	1.8174e-28	28	BSR/Beta.Satellite.Satellite	9	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57401478	G	n	CC	1.1173e-31	34	BSR/Beta.Satellite.Satellite	9	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57401525	C	n	AA	5.5481e-36	62	BSR/Beta.Satellite.Satellite	47	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57401603	A	n	TT	0.0079839	16	BSR/Beta.Satellite.Satellite	78	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57401814	C	n	TT	1.6367e-53	307	BSR/Beta.Satellite.Satellite	211	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57402102	T	n	GG	2.4657e-54	24	BSR/Beta.Satellite.Satellite	12	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57402114	A	n	CC	9.4555e-47	28	BSR/Beta.Satellite.Satellite	12	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57402178	A	n	GG	1.0068e-48	36	BSR/Beta.Satellite.Satellite	64	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57402363	A	n	TT	1.2529e-193	97	BSR/Beta.Satellite.Satellite	139	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57402502	A	n	GG	1.8738e-125	85	BSR/Beta.Satellite.Satellite	116	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57402618	A	n	CC	9.6548e-94	44	BSR/Beta.Satellite.Satellite	36	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57402654	A	n	GG	2.8057e-266	125	BSR/Beta.Satellite.Satellite	36	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57402831	T	n	CC	1.5098e-218	172	BSR/Beta.Satellite.Satellite	57	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57402888	A	n	CC	2.3998e-26	15	BSR/Beta.Satellite.Satellite	57	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57402961	A	n	GG	3.6149e-274	135	BSR/Beta.Satellite.Satellite	45	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57403006	A	n	CC	1.3204e-30	37	BSR/Beta.Satellite.Satellite	44	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57403050	A	n	TT	4.4194e-57	33	BSR/Beta.Satellite.Satellite	44	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57403212	T	n	GG	3.4297e-21	51	BSR/Beta.Satellite.Satellite	107	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57403319	A	n	CC	0	1268	BSR/Beta.Satellite.Satellite	3	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57403322	A	n	TT	0	1330	BSR/Beta.Satellite.Satellite	3	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57403329	T	n	AA	0	1560	BSR/Beta.Satellite.Satellite	7	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57403373	T	n	GG	0	704	BSR/Beta.Satellite.Satellite	44	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57403462	T	n	CC	7.5084e-178	98	BSR/Beta.Satellite.Satellite	89	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57403589	T	n	GG	1.8776e-254	292	BSR/Beta.Satellite.Satellite	101	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57403690	A	n	GG	5.3309e-94	44	BSR/Beta.Satellite.Satellite	89	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57403779	T	n	AA	1.1087e-125	72	BSR/Beta.Satellite.Satellite	89	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57403947	C	n	GG	1.5643e-187	208	BSR/Beta.Satellite.Satellite	168	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57404212	C	n	TT	5.2093e-231	121	BSR/Beta.Satellite.Satellite	214	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57404426	A	n	TT	1.0494e-77	37	BSR/Beta.Satellite.Satellite	201	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57404627	G	n	AA	1.0688e-57	69	BSR/Beta.Satellite.Satellite	155	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57404782	T	n	CC	3.1655e-198	101	BSR/Beta.Satellite.Satellite	1	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57404783	C	n	AA	4.2078e-194	102	BSR/Beta.Satellite.Satellite	1	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57404793	T	n	AA	8.989e-206	100	BSR/Beta.Satellite.Satellite	10	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57405024	T	n	AA	4.7766e-47	25	BSR/Beta.Satellite.Satellite	83	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57405107	T	n	AA	1.0937e-16	13	BSR/Beta.Satellite.Satellite	34	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57405141	C	n	TT	2.8661e-35	38	BSR/Beta.Satellite.Satellite	20	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57405161	G	n	CC	1.9808e-40	28	BSR/Beta.Satellite.Satellite	20	rs71293643	mnp	+	AGTGACTGTGAA
chrY	57405253	T	n	CC	2.3272e-123	67	BSR/Beta.Satellite.Satellite	55	rs71270491	mnp	+	ATAGTG
chrY	57405308	T	n	GG	1.9123e-61	38	BSR/Beta.Satellite.Satellite	49	rs71270491	mnp	+	ATAGTG
chrY	57405357	A	n	CC	2.7002e-86	46	BSR/Beta.Satellite.Satellite	49	rs71270491	mnp	+	ATAGTG
chrY	57405486	T	n	CC	0.00079666	97	BSR/Beta.Satellite.Satellite	65	rs71270491	mnp	+	ATAGTG
chrY	57405551	T	n	CC	1.0758e-06	17	BSR/Beta.Satellite.Satellite	65	rs71270491	mnp	+	ATAGTG
chrY	57405617	G	n	AA	3.1264e-30	24	BSR/Beta.Satellite.Satellite	14	rs71270491	mnp	+	ATAGTG
chrY	57405631	A	n	CC	6.0325e-15	53	BSR/Beta.Satellite.Satellite	14	rs71270491	mnp	+	ATAGTG
chrY	57405647	T	n	GG	4.0552e-111	74	BSR/Beta.Satellite.Satellite	16	rs71270491	mnp	+	ATAGTG
chrY	57405771	A	n	CC	7.9136e-33	29	BSR/Beta.Satellite.Satellite	43	rs71270491	mnp	+	ATAGTG
chrY	57405814	T	n	GG	0.00026507	32	BSR/Beta.Satellite.Satellite	9	rs71270491	mnp	+	ATAGTG
chrY	57405823	A	n	TT	6.1325e-44	37	BSR/Beta.Satellite.Satellite	9	rs71270491	mnp	+	ATAGTG
chrY	57406016	A	n	GG	5.2576e-43	33	BSR/Beta.Satellite.Satellite	87	rs71270491	mnp	+	ATAGTG
chrY	57406103	T	n	CC	8.7158e-191	133	BSR/Beta.Satellite.Satellite	87	rs71270491	mnp	+	ATAGTG
chrY	57406250	A	n	GG	2.7034e-253	136	BSR/Beta.Satellite.Satellite	147	rs71270491	mnp	+	ATAGTG
chrY	57406517	T	n	CC	1.714e-38	47	BSR/Beta.Satellite.Satellite	13	-	-	-	-
chrY	57406530	T	n	GG	5.1629e-39	42	BSR/Beta.Satellite.Satellite	13	rs2334092	single	-	AC
chrY	57406618	C	n	AA	5.1649e-69	76	BSR/Beta.Satellite.Satellite	88	rs10449186	single	+	AC
chrY	57406710	G	n	CC	2.5799e-77	57	BSR/Beta.Satellite.Satellite	75	rs62607193	single	+	CG
chrY	57406785	G	n	TT	7.0186e-49	28	BSR/Beta.Satellite.Satellite	75	rs11799171	single	+	GT
chrY	57407001	G	n	TT	3.2019e-136	72	BSR/Beta.Satellite.Satellite	24	rs2641165	single	-	AC
chrY	57407025	T	n	AA	1.941e-19	29	BSR/Beta.Satellite.Satellite	24	rs2527438	single	-	AT
chrY	57407054	A	n	CC	8.1238e-11	16	BSR/Beta.Satellite.Satellite	12	rs2641164	single	-	GT
chrY	57407066	C	n	GG	8.0418e-44	24	BSR/Beta.Satellite.Satellite	12	rs2527437	single	-	CG
chrY	57407131	A	n	CC	0	183	BSR/Beta.Satellite.Satellite	65	rs2641163	single	-	GT
chrY	57407497	G	n	TT	0.00070032	14	L1PA4.LINE.L1	366	rs2641162	single	-	AC
chrY	57407919	A	n	GG	2.1657e-15	13	L1PA4.LINE.L1	379	rs4893759	single	-	CT
chrY	57408298	T	n	AA	0.00038741	9	L1PA4.LINE.L1	304	rs4396069	single	-	AT
chrY	57408602	C	n	GG	2.0183e-08	6	L1PA4.LINE.L1	255	rs6568359	single	-	CG
chrY	57408857	A	n	TT	0.00072654	10	L1PA4.LINE.L1	255	rs6568357	single	-	AT
chrY	57409324	T	n	AA	5.4701e-23	11	L1PA4.LINE.L1	2	rs7892884	single	-	AT
chrY	57409326	G	n	CC	5.6653e-23	11	L1PA4.LINE.L1	2	rs7893083	single	-	CG
chrY	57409652	A	n	CC	0.028272	2	L1PA4.LINE.L1	326	rs9633240	single	-	GT
chrY	57410189	A	n	CC	1.9328e-99	55	L1PA4.LINE.L1	181	rs4893749	single	-	GT
chrY	57410370	G	n	AA	0.0033926	12	L1PA4.LINE.L1	94	rs4893745	single	-	CT
chrY	57410464	T	n	CC	2.8763e-27	21	L1PA4.LINE.L1	94	rs12015123	single	+	CT
chrY	57410598	A	n	GG	3.2474e-59	59	L1PA4.LINE.L1	134	rs9320078	single	-	CT
chrY	57410779	G	n	AA	4.713e-06	7	-	181	rs57824732	deletion	+	-GA
chrY	57411007	A	n	CC	0	212	-	133	rs4893742	single	-	GT
chrY	57411140	T	n	CC	0.0010476	3	-	29	rs4893675	single	-	AG
chrY	57411169	C	n	AA	0.089525	2	-	10	rs4893740	single	-	GT
chrY	57411179	T	n	CC	8.8003e-07	4	-	10	rs4893674	single	-	AG
chrY	57411189	T	n	CC	0.21098	16	-	10	rs4893673	single	-	AG
chrY	57411501	A	n	GG	1.8714e-33	21	-	150	rs2641160	single	-	CT
chrY	57411651	A	n	GG	1.6525e-17	15	-	150	rs57278327	deletion	+	-AA
chrY	57412446	T	n	AA	2.9896e-05	3	L1M4c.LINE.L1	249	rs2906316	single	-	AT
chrY	57412695	A	n	CC	3.5176e-05	3	L1M4c.LINE.L1	159	rs2641159	single	-	GT
chrY	57412854	T	n	CC	4.7412e-38	16	-	159	rs2527430	single	-	AG
chrY	57413082	G	n	TT	2.8786e-255	124	MER41A.LTR.ERV1	16	rs2527429	single	-	AC
chrY	57413098	G	n	AA	8.8331e-92	59	MER41A.LTR.ERV1	16	rs2527428	single	-	CT
chrY	57413424	T	n	GG	1.5044e-100	40	L1ME3A.LINE.L1	88	rs2641157	single	-	AC
chrY	57413512	G	n	CC	2.3454e-30	18	L1ME3A.LINE.L1	21	rs2527426	single	-	CG
chrY	57413533	G	n	CC	2.0776e-48	34	L1ME3A.LINE.L1	21	rs2527425	single	-	CG
chrY	57414076	T	n	AA	1.5701e-05	16	L1ME3A.LINE.L1	1	rs71208392	in-del	-	-CTTT
chrY	57414077	T	n	AA	3.2321e-16	16	L1ME3A.LINE.L1	1	rs71208392	in-del	-	-CTTT
chrY	57414082	A	n	TT	1.8318e-09	15	L1ME3A.LINE.L1	5	rs71208392	in-del	-	-CTTT
chrY	57414822	T	n	CC	9.744e-08	12	L1M4c.LINE.L1	301	rs4893734	single	-	AG
chrY	57415123	T	n	CC	2.6418e-15	16	L1MD2.LINE.L1	106	rs4109548	single	+	CT
chrY	57415229	C	n	GG	1.5942e-28	17	L1MD2.LINE.L1	5	rs2641156	single	-	CG
chrY	57415234	A	n	GG	3.9655e-23	15	L1MD2.LINE.L1	5	rs2641155	single	-	CT
chrY	57415296	C	n	AA	5.2332e-08	4	L1MD2.LINE.L1	62	rs2641153	single	-	GT
chrY	57415827	A	n	GG	5.7722e-06	8	L1M4c.LINE.L1	112	rs2641151	single	-	CT
chrY	57415939	T	n	CC	0	178	AluJo.SINE.Alu	112	rs2527421	single	-	AG
chrY	57416148	A	n	GG	4.5926e-153	120	AluJo.SINE.Alu	10	rs1913774	single	-	AC/T
chrY	57416158	T	n	AA	1.4785e-52	77	AluJo.SINE.Alu	5	rs7474442	single	-	AT
chrY	57416163	C	n	TT	1.3831e-20	65	AluJo.SINE.Alu	5	rs6568342	single	-	AG
chrY	57416260	T	n	CC	0.0096074	2	L1M4c.LINE.L1	97	rs4256760	single	-	AG
chrY	57416599	C	n	AA	1.4024e-05	3	L1M4c.LINE.L1	171	rs2641148	single	-	GT
chrY	57416770	T	n	AA	0.022748	2	-	98	rs6568340	single	-	AT
chrY	57416868	A	n	GG	0	245	AluJb.SINE.Alu	74	rs7892944	single	-	CT
chrY	57416942	T	n	CC	0	203	AluJb.SINE.Alu	33	rs7893111	single	-	AG
chrY	57416975	A	n	GG	2.5742e-63	176	AluJb.SINE.Alu	33	-	-	-	-
chrY	57417079	G	n	AA	2.7534e-05	29	L1M4c.LINE.L1	87	rs2878040	single	-	CT
chrY	57417166	T	n	AA	1.1283e-265	132	AluSc.SINE.Alu	87	rs7892899	single	-	AT
chrY	57417988	A	n	CC	1.5614e-169	122	AluJb.SINE.Alu	501	rs4893733	single	-	GT
chrY	57418489	C	n	AA	0.015016	2	L1M4c.LINE.L1	501	rs2201324	single	-	GT
chrY	57419323	G	n	AA	0.0058156	4	L1MC4.LINE.L1	71	rs6568331	single	-	CT
chrY	57419394	T	n	CC	6.5398e-20	19	L1MC4.LINE.L1	71	rs10449139	single	+	CT
chrY	57421000	C	n	AA	2.2566e-187	138	-	394	rs1828990	single	-	AG/T
chrY	57421394	G	n	CC	4.1968e-30	14	-	347	rs3853214	single	+	CG
chrY	57421741	T	n	CC	3.7156e-21	9	-	168	rs4047586	single	-	AG
chrY	57421909	G	n	CC	6.926e-14	64	-	168	rs3866396	single	+	CG
chrY	57422087	A	n	TT	2.3497e-33	24	-	7	rs4047583	single	-	AT
chrY	57422094	T	n	GG	5.8907e-37	24	-	7	rs2878039	single	-	AC
chrY	57422129	A	n	CC	5.1399e-110	321	AluSx.SINE.Alu	35	-	-	-	-
chrY	57422165	G	n	CC	3.7259e-106	87	AluSx.SINE.Alu	14	rs7892976	single	-	CG
chrY	57422179	A	n	TT	2.927e-56	79	AluSx.SINE.Alu	14	rs7893025	single	-	AT
chrY	57422215	G	n	AA	0.35219	48	AluSx.SINE.Alu	36	-	-	-	-
chrY	57422262	T	n	GG	1.2279e-172	116	AluSx.SINE.Alu	47	rs9633224	single	-	AC
chrY	57422367	T	n	CC	1.1935e-86	66	AluSx.SINE.Alu	38	rs9320089	single	-	AG
chrY	57422405	G	n	AA	8.4116e-35	51	AluSx.SINE.Alu	38	rs11799161	single	+	AG
chrY	57422566	G	n	TT	2.3345e-05	3	-	161	rs2005746	single	+	GT
chrY	57423025	A	n	TT	0.054852	2	(TA)n.Simple_repeat.Simple_repeat	459	-	-	-	-
chrY	57423600	C	n	TT	3.9131e-61	47	AluJo.SINE.Alu	333	rs71222101	mnp	-	AGATCACTGGATCACG
chrY	57423933	G	n	TT	0.0049537	4	-	170	rs2527418	single	-	AC
chrY	57424103	A	n	CC	1.8713e-25	34	LTR54B.LTR.ERV1	170	rs2641142	single	-	GT
chrY	57424364	G	n	AA	2.7133e-138	78	LTR54B.LTR.ERV1	19	rs3965860	single	-	CT
chrY	57424383	A	n	GG	3.4359e-51	32	LTR54B.LTR.ERV1	19	rs4893668	single	-	CT
chrY	57424413	G	n	AA	1.7165e-14	8	MER39.LTR.ERV1	30	rs4047592	single	-	CT
chrY	57424492	A	n	CC	4.4844e-80	41	MER39.LTR.ERV1	41	rs2641140	single	-	GT
chrY	57424533	A	n	GG	2.6334e-225	109	MER39.LTR.ERV1	41	rs71213958	mnp	+	lengthTooLong
chrY	57424643	T	n	AA	7.7651e-38	19	MER39.LTR.ERV1	110	rs2527417	single	-	AT
chrY	57425014	T	n	CC	0	145	-	177	rs2527415	single	-	AG
chrY	57425191	A	n	GG	1.3406e-59	41	AluSc.SINE.Alu	177	rs2527414	single	-	CT
chrY	57425378	T	n	CC	3.7187e-204	121	AluSc.SINE.Alu	187	rs2527413	single	-	AG
chrY	57425575	G	n	AA	4.7214e-23	9	LTR37A.LTR.ERV1	197	rs1817880	single	-	CT
chrY	57425837	T	n	CC	0	186	AluJb.SINE.Alu	4	rs4047590	single	-	AG
chrY	57425841	C	n	AA	1.5711e-187	183	AluJb.SINE.Alu	4	rs4047589	single	-	GT
chrY	57425917	G	n	CC	6.3986e-118	82	LTR37A.LTR.ERV1	76	rs3855803	single	-	CG
chrY	57426008	T	n	CC	4.2665e-14	15	LTR37A.LTR.ERV1	91	rs3878828	single	+	CT
chrY	57426315	A	n	GG	3.2741e-99	125	-	23	rs4539073	single	-	CT
chrY	57426338	T	n	GG	4.5794e-238	174	-	1	rs4399100	single	-	AC
chrY	57426339	T	n	AA	9.5532e-221	181	-	1	rs4047599	single	-	AT
chrY	57426593	A	n	GG	0	209	-	254	rs2527411	single	-	CT
chrY	57427144	G	n	TT	0.0033471	3	-	162	rs2201321	single	-	AC
chrY	57427306	G	n	TT	2.0671e-59	30	-	65	rs9320102	single	+	GT
chrY	57427371	C	n	TT	1.5571e-11	7	-	65	rs4634846	single	-	AG
chrY	57427515	G	n	AA	0.00027804	12	-	144	rs4047598	single	-	CT
chrY	57427820	A	n	CC	4.0917e-128	55	-	117	rs4047596	single	-	GT
chrY	57427937	G	n	AA	8.1416e-14	13	-	91	rs28701840	single	+	AG
chrY	57428028	G	n	AA	1.2364e-54	156	-	91	rs4893666	single	-	CT
chrY	57428173	C	n	TT	0.00055192	9	-	36	rs4047608	single	-	AG
chrY	57428209	T	n	GG	2.5407e-05	9	-	36	rs2333809	single	-	AC
chrY	57428263	G	n	AA	3.1984e-11	19	-	34	rs4047607	single	-	CT
chrY	57428297	C	n	TT	2.8556e-09	11	-	23	rs3853219	single	+	CT
chrY	57428320	C	n	TT	1.2312e-15	11	-	23	rs4047606	single	-	AG
chrY	57428417	A	n	GG	1.1423e-17	10	-	46	rs4047605	single	-	CT
chrY	57428463	C	n	AA	6.1299e-149	142	AluSq.SINE.Alu	46	rs3853220	single	+	AC/T
chrY	57428654	A	n	GG	9.1635e-103	84	AluSq.SINE.Alu	191	rs4047603	single	-	CT
chrY	57428940	A	n	CC	2.3284e-08	7	-	56	rs2079344	single	-	CT
chrY	57428996	A	n	GG	5.1325e-30	14	-	56	rs2527409	single	-	CT
chrY	57429076	T	n	CC	1.9564e-08	4	-	46	rs2527408	single	-	AG
chrY	57429122	G	n	AA	2.6332e-08	4	-	46	rs2641132	single	-	CT
chrY	57429244	T	n	CC	0	319	-	122	rs2527407	single	-	AG
chrY	57429553	A	n	GG	1.8559e-53	21	-	235	rs2527406	single	-	CT
chrY	57429788	C	n	TT	3.4205e-09	4	L1MC4a.LINE.L1	235	rs2641131	single	-	AG
chrY	57430045	C	n	TT	1.049e-266	119	MLT1D.LTR.MaLR	70	rs2641130	single	-	AG
chrY	57430115	A	n	GG	4.7931e-186	119	MLT1D.LTR.MaLR	70	rs2906323	single	-	CT
chrY	57430407	C	n	TT	1.9375e-101	61	AluY.SINE.Alu	171	rs4531240	single	-	AG
chrY	57430578	T	n	AA	4.787e-06	196	AluY.SINE.Alu	171	rs7893002	single	-	AT
chrY	57431193	A	n	GG	0.0014234	4	-	119	rs4040979	single	-	CT
chrY	57431312	C	n	GG	5.4825e-05	3	-	119	rs2333799	single	-	CG
chrY	57431813	T	n	CC	1.1857e-22	41	AluJo.SINE.Alu	282	rs4372191	single	-	AG
chrY	57432095	A	n	GG	5.5861e-226	168	MLT1F.LTR.MaLR	15	rs4104965	single	-	CT
chrY	57432110	C	n	TT	2.0314e-149	79	MLT1F.LTR.MaLR	15	rs1602910	single	-	AG
chrY	57432155	A	n	GG	4.3277e-20	8	MLT1F.LTR.MaLR	45	rs4420025	single	-	CT
chrY	57432309	G	n	CC	1.1588e-11	20	MLT1F.LTR.MaLR	69	rs6568304	single	-	CG
chrY	57432378	T	n	CC	1.6486e-48	40	MLT1F.LTR.MaLR	69	rs6568303	single	-	AG
chrY	57432466	A	n	CC	3.9198e-05	5	MLT1F.LTR.MaLR	88	rs6568302	single	-	GT
chrY	57432617	T	n	GG	4.5012e-07	4	-	151	rs4893665	single	-	AC
chrY	57432915	A	n	CC	4.2233e-13	10	L1PB1.LINE.L1	59	rs3954655	single	+	AC
chrY	57432974	T	n	CC	3.2043e-17	11	L1PB1.LINE.L1	59	rs4366260	single	-	AG
chrY	57433115	T	n	GG	0.30896	81	AluSp.SINE.Alu	1	rs4360472	single	-	AC
chrY	57433116	T	n	CC	4.2871e-69	83	AluSp.SINE.Alu	1	rs3954657	single	+	CT
chrY	57433512	T	n	CC	0	205	MLT1E.LTR.MaLR	51	rs2333794	single	-	AG
chrY	57433563	T	n	CC	2.3244e-25	12	MLT1E.LTR.MaLR	51	rs2333793	single	-	AG
chrY	57433872	T	n	AA	2.5032e-105	52	MLT1E.LTR.MaLR	230	rs4040986	in-del	-	-TG
chrY	57434102	T	n	CC	0.006271	2	-	230	rs3866426	single	+	CT
chrY	57435385	T	n	CC	3.1334e-05	92	FRAM/FAM.SINE.Alu	103	rs12171801	single	+	CT
chrY	57435488	A	n	GG	4.9266e-128	140	AluY.SINE.Alu	74	rs28631671	single	+	AG
chrY	57435562	A	n	GG	2.5672e-32	53	AluY.SINE.Alu	27	rs28569007	single	+	AG
chrY	57435589	G	n	TT	0.012455	34	AluY.SINE.Alu	27	rs28542935	single	+	GT
chrY	57435704	T	n	CC	1.0929e-90	103	AluY.SINE.Alu	66	rs7892912	single	-	AG
chrY	57435770	G	n	TT	3.6152e-08	4	L1M5.LINE.L1	66	rs7892991	single	-	AC
chrY	57435900	A	n	GG	2.2732e-140	204	AluJo.SINE.Alu	117	rs1826575	single	-	CT
chrY	57436017	T	n	GG	6.6969e-38	68	AluJo.SINE.Alu	117	rs1845328	single	-	AC
chrY	57436356	T	n	AA	2.6647e-05	3	-	71	rs12690420	single	+	AT
chrY	57436427	A	n	CC	1.0885e-42	16	-	18	rs4379626	single	-	GT
chrY	57436445	A	n	GG	3.1421e-40	16	-	18	rs2527427	single	-	CT
chrY	57436578	T	n	CC	2.324e-308	262	AluSq.SINE.Alu	133	rs2641124	single	-	AG
chrY	57436821	G	n	CC	2.3447e-12	8	-	243	rs2641123	single	-	CG
chrY	57437269	T	n	GG	4.4024e-09	28	-	28	rs7892926	single	-	AC
chrY	57437297	G	n	AA	1.0026e-36	24	-	28	rs4047329	single	-	CT
chrY	57437478	T	n	CC	6.196e-06	28	-	7	rs2334090	single	-	AG
chrY	57437485	C	n	TT	5.7119e-05	28	-	7	rs7892946	single	-	AG
chrY	57437588	T	n	AA	2.5069e-05	3	-	103	rs2334089	single	-	AT
chrY	57437833	C	n	GG	1.7221e-263	115	-	164	rs28546143	single	+	CG
chrY	57437997	T	n	CC	2.7594e-18	9	-	130	-	-	-	-
chrY	57438127	A	n	CC	7.5885e-30	18	-	67	rs4108316	single	+	AC
chrY	57438194	A	n	GG	2.4001e-111	125	L2.LINE.L2	67	-	-	-	-
chrY	57438346	C	n	TT	1.5722e-13	14	L1PA3.LINE.L1	69	-	-	-	-
chrY	57438415	T	n	CC	1.6743e-148	75	L1PA3.LINE.L1	29	rs28436660	single	+	CT
chrY	57438444	C	n	GG	2.2706e-300	176	AluSx.SINE.Alu	29	rs7892936	single	-	CG
chrY	57438493	T	n	CC	7.1546e-78	103	AluSx.SINE.Alu	31	rs7892871	single	-	AG
chrY	57438524	G	n	CC	0.0052108	36	AluSx.SINE.Alu	31	rs7892945	single	-	CG
chrY	57438681	T	n	CC	2.5526e-293	140	AluSx.SINE.Alu	157	rs4641255	single	-	AG
chrY	57439115	C	n	TT	5.071e-14	28	L2.LINE.L2	434	rs6568298	single	-	AG
chrY	57439724	T	n	CC	3.8368e-22	39	AluSx.SINE.Alu	115	rs11152882	single	+	CT
chrY	57439839	A	n	GG	6.2978e-140	79	AluSx.SINE.Alu	90	rs11152883	single	+	AG
chrY	57439929	C	n	TT	5.6706e-11	69	-	90	rs10453823	single	+	CT
chrY	57440060	G	n	AA	0.00051151	9	-	131	rs4345757	single	-	CT
chrY	57440286	T	n	GG	1.8629e-07	12	-	226	rs4047346	single	-	AC
chrY	57440900	C	n	GG	0.015654	2	-	1	rs6568295	single	-	CG
chrY	57440901	C	n	GG	0.015145	2	-	1	rs6568294	single	-	CG
chrY	57441113	A	n	GG	4.6324e-87	105	AluJo.SINE.Alu	135	-	-	-	-
chrY	57441248	T	n	GG	3.482e-104	68	AluSp.SINE.Alu	135	rs7893124	single	-	AC
chrY	57441562	T	n	CC	1.6402e-17	92	AluJo.SINE.Alu	22	rs60481488	single	+	CT
chrY	57441584	T	n	CC	1.0705e-73	91	AluJo.SINE.Alu	22	rs28715603	single	+	CT
chrY	57441844	T	n	CC	3.265e-154	73	L2.LINE.L2	98	rs2334082	single	-	AG
chrY	57441942	C	n	TT	4.5061e-44	38	L2.LINE.L2	98	rs2334081	single	-	AG
chrY	57442052	A	n	GG	1.6954e-46	42	L2.LINE.L2	110	rs9724531	single	+	AG
chrY	57442196	A	n	CC	3.2843e-169	75	L2.LINE.L2	144	rs9724556	single	+	AC
chrY	57442480	T	n	CC	3.193e-07	107	AluSc.SINE.Alu	284	-	-	-	-